data_3G6S # _entry.id 3G6S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3G6S RCSB RCSB051494 WWPDB D_1000051494 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id BvR56D _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3G6S _pdbx_database_status.recvd_initial_deposition_date 2009-02-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Forouhar, F.' 1 'Lew, S.' 2 'Seetharaman, J.' 3 'Xiao, R.' 4 'Sahdev, S.' 5 'Foote, E.L.' 6 'Ciccosanti, C.' 7 'Wang, D.' 8 'Everett, J.K.' 9 'Nair, R.' 10 'Acton, T.B.' 11 'Rost, B.' 12 'Montelione, G.T.' 13 'Hunt, J.F.' 14 'Tong, L.' 15 'Northeast Structural Genomics Consortium (NESG)' 16 # _citation.id primary _citation.title 'Crystal structure of the endonuclease/exonuclease/phosphatase (BVU_0621) from Bacteroides vulgatus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Forouhar, F.' 1 primary 'Lew, S.' 2 primary 'Seetharaman, J.' 3 primary 'Xiao, R.' 4 primary 'Sahdev, S.' 5 primary 'Foote, E.L.' 6 primary 'Ciccosanti, C.' 7 primary 'Wang, D.' 8 primary 'Everett, J.K.' 9 primary 'Nair, R.' 10 primary 'Acton, T.B.' 11 primary 'Rost, B.' 12 primary 'Montelione, G.T.' 13 primary 'Hunt, J.F.' 14 primary 'Tong, L.' 15 # _cell.entry_id 3G6S _cell.length_a 75.601 _cell.length_b 75.601 _cell.length_c 66.715 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3G6S _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative endonuclease/exonuclease/phosphatase family protein' 30880.836 1 ? ? 'UNP residues 22-280' ? 2 water nat water 18.015 83 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;KTDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVG(MSE)QEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAG EYAPLFYRKDKYEVLDSNTFWLAENPDSVG(MSE)(MSE)GWDAVCVRIATWAKFKDKATGKIF(MSE)AVNTHFDHVGE EARRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFV(MSE)KDAYKTAARVTGVDYTFHDFARIPAEDC EKIDFIFVTPQVLVKSCEIPAEVPEALLSDHNPQLADLELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;KTDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAP LFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEARRQSALLIIRKIKE IVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIP AEVPEALLSDHNPQLADLELEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier BvR56D # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 THR n 1 3 ASP n 1 4 VAL n 1 5 ARG n 1 6 TRP n 1 7 ALA n 1 8 THR n 1 9 PHE n 1 10 ASN n 1 11 ILE n 1 12 ARG n 1 13 TYR n 1 14 ASP n 1 15 ASN n 1 16 PRO n 1 17 GLN n 1 18 ASP n 1 19 SER n 1 20 LEU n 1 21 ASN n 1 22 ASN n 1 23 TRP n 1 24 GLN n 1 25 TYR n 1 26 ARG n 1 27 LYS n 1 28 ASP n 1 29 ARG n 1 30 VAL n 1 31 CYS n 1 32 GLN n 1 33 PHE n 1 34 ILE n 1 35 LYS n 1 36 ASP n 1 37 HIS n 1 38 GLU n 1 39 LEU n 1 40 ASP n 1 41 ILE n 1 42 VAL n 1 43 GLY n 1 44 MSE n 1 45 GLN n 1 46 GLU n 1 47 VAL n 1 48 LEU n 1 49 HIS n 1 50 ASN n 1 51 GLN n 1 52 PHE n 1 53 GLN n 1 54 ASP n 1 55 LEU n 1 56 ARG n 1 57 ALA n 1 58 GLY n 1 59 LEU n 1 60 PRO n 1 61 GLU n 1 62 TYR n 1 63 ASP n 1 64 GLY n 1 65 ILE n 1 66 GLY n 1 67 VAL n 1 68 GLY n 1 69 ARG n 1 70 ASP n 1 71 ASP n 1 72 GLY n 1 73 LYS n 1 74 THR n 1 75 ALA n 1 76 GLY n 1 77 GLU n 1 78 TYR n 1 79 ALA n 1 80 PRO n 1 81 LEU n 1 82 PHE n 1 83 TYR n 1 84 ARG n 1 85 LYS n 1 86 ASP n 1 87 LYS n 1 88 TYR n 1 89 GLU n 1 90 VAL n 1 91 LEU n 1 92 ASP n 1 93 SER n 1 94 ASN n 1 95 THR n 1 96 PHE n 1 97 TRP n 1 98 LEU n 1 99 ALA n 1 100 GLU n 1 101 ASN n 1 102 PRO n 1 103 ASP n 1 104 SER n 1 105 VAL n 1 106 GLY n 1 107 MSE n 1 108 MSE n 1 109 GLY n 1 110 TRP n 1 111 ASP n 1 112 ALA n 1 113 VAL n 1 114 CYS n 1 115 VAL n 1 116 ARG n 1 117 ILE n 1 118 ALA n 1 119 THR n 1 120 TRP n 1 121 ALA n 1 122 LYS n 1 123 PHE n 1 124 LYS n 1 125 ASP n 1 126 LYS n 1 127 ALA n 1 128 THR n 1 129 GLY n 1 130 LYS n 1 131 ILE n 1 132 PHE n 1 133 MSE n 1 134 ALA n 1 135 VAL n 1 136 ASN n 1 137 THR n 1 138 HIS n 1 139 PHE n 1 140 ASP n 1 141 HIS n 1 142 VAL n 1 143 GLY n 1 144 GLU n 1 145 GLU n 1 146 ALA n 1 147 ARG n 1 148 ARG n 1 149 GLN n 1 150 SER n 1 151 ALA n 1 152 LEU n 1 153 LEU n 1 154 ILE n 1 155 ILE n 1 156 ARG n 1 157 LYS n 1 158 ILE n 1 159 LYS n 1 160 GLU n 1 161 ILE n 1 162 VAL n 1 163 GLY n 1 164 GLU n 1 165 ARG n 1 166 PRO n 1 167 ALA n 1 168 VAL n 1 169 VAL n 1 170 THR n 1 171 GLY n 1 172 ASP n 1 173 PHE n 1 174 ASN n 1 175 VAL n 1 176 THR n 1 177 ASP n 1 178 ALA n 1 179 SER n 1 180 ASP n 1 181 ALA n 1 182 TYR n 1 183 GLU n 1 184 THR n 1 185 ILE n 1 186 THR n 1 187 THR n 1 188 ASN n 1 189 GLU n 1 190 PHE n 1 191 VAL n 1 192 MSE n 1 193 LYS n 1 194 ASP n 1 195 ALA n 1 196 TYR n 1 197 LYS n 1 198 THR n 1 199 ALA n 1 200 ALA n 1 201 ARG n 1 202 VAL n 1 203 THR n 1 204 GLY n 1 205 VAL n 1 206 ASP n 1 207 TYR n 1 208 THR n 1 209 PHE n 1 210 HIS n 1 211 ASP n 1 212 PHE n 1 213 ALA n 1 214 ARG n 1 215 ILE n 1 216 PRO n 1 217 ALA n 1 218 GLU n 1 219 ASP n 1 220 CYS n 1 221 GLU n 1 222 LYS n 1 223 ILE n 1 224 ASP n 1 225 PHE n 1 226 ILE n 1 227 PHE n 1 228 VAL n 1 229 THR n 1 230 PRO n 1 231 GLN n 1 232 VAL n 1 233 LEU n 1 234 VAL n 1 235 LYS n 1 236 SER n 1 237 CYS n 1 238 GLU n 1 239 ILE n 1 240 PRO n 1 241 ALA n 1 242 GLU n 1 243 VAL n 1 244 PRO n 1 245 GLU n 1 246 ALA n 1 247 LEU n 1 248 LEU n 1 249 SER n 1 250 ASP n 1 251 HIS n 1 252 ASN n 1 253 PRO n 1 254 GLN n 1 255 LEU n 1 256 ALA n 1 257 ASP n 1 258 LEU n 1 259 GLU n 1 260 LEU n 1 261 GLU n 1 262 HIS n 1 263 HIS n 1 264 HIS n 1 265 HIS n 1 266 HIS n 1 267 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BVU_0621 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 1447 / NCTC 11154' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ;Removal of the first N-terminal 21 amino acids and the terminating residue Phe281, and substitution of Met residues by Seleno-Met residues and addition of a C-tag (LEHHHHHH) ; _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides vulgatus ATCC 8482' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8482 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6KY15_BACV8 _struct_ref.pdbx_db_accession A6KY15 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KTDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAP LFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEARRQSALLIIRKIKE IVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIP AEVPEALLSDHNPQLADLE ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3G6S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 259 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6KY15 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 259 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3G6S LEU A 260 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 260 1 1 3G6S GLU A 261 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 261 2 1 3G6S HIS A 262 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 262 3 1 3G6S HIS A 263 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 263 4 1 3G6S HIS A 264 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 264 5 1 3G6S HIS A 265 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 265 6 1 3G6S HIS A 266 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 266 7 1 3G6S HIS A 267 ? UNP A6KY15 ? ? 'EXPRESSION TAG' 267 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3G6S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_percent_sol 60.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'MICROBATCH UNDER OIL' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;Protein solution: 10 mM Tris-HCl pH 7.5, 100 mM Sodium chloride, 5 mM DTT. Reservoir solution: 100 mM Bis-Tris propane pH 7.0, 30% PEG 8000, 60 mM Lithium sulfate, MICROBATCH UNDER OIL, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-02-05 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97877 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97877 # _reflns.entry_id 3G6S _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.50 _reflns.number_obs 25328 _reflns.number_all 25328 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.120 _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI 18.01 _reflns.B_iso_Wilson_estimate 23.6 _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs 0.414 _reflns_shell.pdbx_Rsym_value 0.375 _reflns_shell.meanI_over_sigI_obs 2.75 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2567 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3G6S _refine.ls_number_reflns_obs 21393 _refine.ls_number_reflns_all 25328 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 502662.79 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.43 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 84.2 _refine.ls_R_factor_obs 0.180 _refine.ls_R_factor_all 0.182 _refine.ls_R_factor_R_work 0.180 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1018 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 37.2 _refine.aniso_B[1][1] -7.84 _refine.aniso_B[2][2] -7.84 _refine.aniso_B[3][3] 15.68 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 30.3329 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Program XtalView has also been used in refinement' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3G6S _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.30 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2099 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 2182 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 19.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.59 _refine_ls_shell.number_reflns_R_work 1311 _refine_ls_shell.R_factor_R_work 0.204 _refine_ls_shell.percent_reflns_obs 52.5 _refine_ls_shell.R_factor_R_free 0.249 _refine_ls_shell.R_factor_R_free_error 0.035 _refine_ls_shell.percent_reflns_R_free 3.7 _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1311 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3G6S _struct.title ;Crystal structure of the endonuclease/exonuclease/phosphatase (BVU_0621) from Bacteroides vulgatus. Northeast Structural Genomics Consortium Target BvR56D ; _struct.pdbx_descriptor 'Putative endonuclease/exonuclease/phosphatase family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3G6S _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;alpha-beta protein, endonuclease/exonuclease/phosphatase, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Endonuclease, Exonuclease, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 15 ? TYR A 25 ? ASN A 15 TYR A 25 5 ? 11 HELX_P HELX_P2 2 ARG A 26 ? HIS A 37 ? ARG A 26 HIS A 37 1 ? 12 HELX_P HELX_P3 3 LEU A 48 ? LEU A 59 ? LEU A 48 LEU A 59 1 ? 12 HELX_P HELX_P4 4 GLY A 143 ? VAL A 162 ? GLY A 143 VAL A 162 1 ? 20 HELX_P HELX_P5 5 SER A 179 ? THR A 187 ? SER A 179 THR A 187 1 ? 9 HELX_P HELX_P6 6 ALA A 195 ? ALA A 199 ? ALA A 195 ALA A 199 1 ? 5 HELX_P HELX_P7 7 PRO A 216 ? CYS A 220 ? PRO A 216 CYS A 220 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 43 C ? ? ? 1_555 A MSE 44 N ? ? A GLY 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 44 C ? ? ? 1_555 A GLN 45 N ? ? A MSE 44 A GLN 45 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A GLY 106 C ? ? ? 1_555 A MSE 107 N ? ? A GLY 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 107 C ? ? ? 1_555 A MSE 108 N ? ? A MSE 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A MSE 108 C ? ? ? 1_555 A GLY 109 N ? ? A MSE 108 A GLY 109 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A PHE 132 C ? ? ? 1_555 A MSE 133 N ? ? A PHE 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.321 ? covale7 covale ? ? A MSE 133 C ? ? ? 1_555 A ALA 134 N ? ? A MSE 133 A ALA 134 1_555 ? ? ? ? ? ? ? 1.321 ? covale8 covale ? ? A VAL 191 C ? ? ? 1_555 A MSE 192 N ? ? A VAL 191 A MSE 192 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A MSE 192 C ? ? ? 1_555 A LYS 193 N ? ? A MSE 192 A LYS 193 1_555 ? ? ? ? ? ? ? 1.324 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 62 ? ILE A 65 ? TYR A 62 ILE A 65 A 2 LEU A 81 ? ARG A 84 ? LEU A 81 ARG A 84 A 3 ILE A 41 ? GLN A 45 ? ILE A 41 GLN A 45 A 4 THR A 2 ? ASN A 10 ? THR A 2 ASN A 10 A 5 GLN A 254 ? LEU A 260 ? GLN A 254 LEU A 260 A 6 LEU A 233 ? ILE A 239 ? LEU A 233 ILE A 239 A 7 ARG A 201 ? GLY A 204 ? ARG A 201 GLY A 204 B 1 TYR A 88 ? TRP A 97 ? TYR A 88 TRP A 97 B 2 ILE A 117 ? ASP A 125 ? ILE A 117 ASP A 125 B 3 ILE A 131 ? HIS A 138 ? ILE A 131 HIS A 138 B 4 ALA A 167 ? ASP A 172 ? ALA A 167 ASP A 172 B 5 ASP A 224 ? VAL A 228 ? ASP A 224 VAL A 228 B 6 LYS A 193 ? ASP A 194 ? LYS A 193 ASP A 194 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 63 ? N ASP A 63 O TYR A 83 ? O TYR A 83 A 2 3 O PHE A 82 ? O PHE A 82 N VAL A 42 ? N VAL A 42 A 3 4 O GLY A 43 ? O GLY A 43 N ALA A 7 ? N ALA A 7 A 4 5 N TRP A 6 ? N TRP A 6 O ALA A 256 ? O ALA A 256 A 5 6 O GLU A 259 ? O GLU A 259 N LEU A 233 ? N LEU A 233 A 6 7 O CYS A 237 ? O CYS A 237 N THR A 203 ? N THR A 203 B 1 2 N ASP A 92 ? N ASP A 92 O LYS A 122 ? O LYS A 122 B 2 3 N THR A 119 ? N THR A 119 O ASN A 136 ? O ASN A 136 B 3 4 N VAL A 135 ? N VAL A 135 O VAL A 168 ? O VAL A 168 B 4 5 N VAL A 169 ? N VAL A 169 O PHE A 227 ? O PHE A 227 B 5 6 O VAL A 228 ? O VAL A 228 N LYS A 193 ? N LYS A 193 # _database_PDB_matrix.entry_id 3G6S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3G6S _atom_sites.fract_transf_matrix[1][1] 0.013227 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013227 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014989 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 22 LYS LYS A . n A 1 2 THR 2 2 23 THR THR A . n A 1 3 ASP 3 3 24 ASP ASP A . n A 1 4 VAL 4 4 25 VAL VAL A . n A 1 5 ARG 5 5 26 ARG ARG A . n A 1 6 TRP 6 6 27 TRP TRP A . n A 1 7 ALA 7 7 28 ALA ALA A . n A 1 8 THR 8 8 29 THR THR A . n A 1 9 PHE 9 9 30 PHE PHE A . n A 1 10 ASN 10 10 31 ASN ASN A . n A 1 11 ILE 11 11 32 ILE ILE A . n A 1 12 ARG 12 12 33 ARG ARG A . n A 1 13 TYR 13 13 34 TYR TYR A . n A 1 14 ASP 14 14 35 ASP ASP A . n A 1 15 ASN 15 15 36 ASN ASN A . n A 1 16 PRO 16 16 37 PRO PRO A . n A 1 17 GLN 17 17 38 GLN GLN A . n A 1 18 ASP 18 18 39 ASP ASP A . n A 1 19 SER 19 19 39 SER SER A . n A 1 20 LEU 20 20 41 LEU LEU A . n A 1 21 ASN 21 21 42 ASN ASN A . n A 1 22 ASN 22 22 43 ASN ASN A . n A 1 23 TRP 23 23 44 TRP TRP A . n A 1 24 GLN 24 24 45 GLN GLN A . n A 1 25 TYR 25 25 46 TYR TYR A . n A 1 26 ARG 26 26 47 ARG ARG A . n A 1 27 LYS 27 27 48 LYS LYS A . n A 1 28 ASP 28 28 49 ASP ASP A . n A 1 29 ARG 29 29 50 ARG ARG A . n A 1 30 VAL 30 30 51 VAL VAL A . n A 1 31 CYS 31 31 52 CYS CYS A . n A 1 32 GLN 32 32 53 GLN GLN A . n A 1 33 PHE 33 33 54 PHE PHE A . n A 1 34 ILE 34 34 55 ILE ILE A . n A 1 35 LYS 35 35 56 LYS LYS A . n A 1 36 ASP 36 36 57 ASP ASP A . n A 1 37 HIS 37 37 58 HIS HIS A . n A 1 38 GLU 38 38 59 GLU GLU A . n A 1 39 LEU 39 39 60 LEU LEU A . n A 1 40 ASP 40 40 61 ASP ASP A . n A 1 41 ILE 41 41 62 ILE ILE A . n A 1 42 VAL 42 42 63 VAL VAL A . n A 1 43 GLY 43 43 64 GLY GLY A . n A 1 44 MSE 44 44 65 MSE MSE A . n A 1 45 GLN 45 45 66 GLN GLN A . n A 1 46 GLU 46 46 67 GLU GLU A . n A 1 47 VAL 47 47 68 VAL VAL A . n A 1 48 LEU 48 48 69 LEU LEU A . n A 1 49 HIS 49 49 70 HIS HIS A . n A 1 50 ASN 50 50 71 ASN ASN A . n A 1 51 GLN 51 51 72 GLN GLN A . n A 1 52 PHE 52 52 73 PHE PHE A . n A 1 53 GLN 53 53 74 GLN GLN A . n A 1 54 ASP 54 54 75 ASP ASP A . n A 1 55 LEU 55 55 76 LEU LEU A . n A 1 56 ARG 56 56 77 ARG ARG A . n A 1 57 ALA 57 57 78 ALA ALA A . n A 1 58 GLY 58 58 79 GLY GLY A . n A 1 59 LEU 59 59 80 LEU LEU A . n A 1 60 PRO 60 60 81 PRO PRO A . n A 1 61 GLU 61 61 82 GLU GLU A . n A 1 62 TYR 62 62 83 TYR TYR A . n A 1 63 ASP 63 63 84 ASP ASP A . n A 1 64 GLY 64 64 85 GLY GLY A . n A 1 65 ILE 65 65 86 ILE ILE A . n A 1 66 GLY 66 66 87 GLY GLY A . n A 1 67 VAL 67 67 88 VAL VAL A . n A 1 68 GLY 68 68 89 GLY GLY A . n A 1 69 ARG 69 69 90 ARG ARG A . n A 1 70 ASP 70 70 91 ASP ASP A . n A 1 71 ASP 71 71 92 ASP ASP A . n A 1 72 GLY 72 72 93 GLY GLY A . n A 1 73 LYS 73 73 94 LYS LYS A . n A 1 74 THR 74 74 95 THR THR A . n A 1 75 ALA 75 75 96 ALA ALA A . n A 1 76 GLY 76 76 97 GLY GLY A . n A 1 77 GLU 77 77 98 GLU GLU A . n A 1 78 TYR 78 78 99 TYR TYR A . n A 1 79 ALA 79 79 100 ALA ALA A . n A 1 80 PRO 80 80 101 PRO PRO A . n A 1 81 LEU 81 81 102 LEU LEU A . n A 1 82 PHE 82 82 103 PHE PHE A . n A 1 83 TYR 83 83 104 TYR TYR A . n A 1 84 ARG 84 84 105 ARG ARG A . n A 1 85 LYS 85 85 106 LYS LYS A . n A 1 86 ASP 86 86 107 ASP ASP A . n A 1 87 LYS 87 87 108 LYS LYS A . n A 1 88 TYR 88 88 109 TYR TYR A . n A 1 89 GLU 89 89 110 GLU GLU A . n A 1 90 VAL 90 90 111 VAL VAL A . n A 1 91 LEU 91 91 112 LEU LEU A . n A 1 92 ASP 92 92 113 ASP ASP A . n A 1 93 SER 93 93 114 SER SER A . n A 1 94 ASN 94 94 115 ASN ASN A . n A 1 95 THR 95 95 116 THR THR A . n A 1 96 PHE 96 96 117 PHE PHE A . n A 1 97 TRP 97 97 118 TRP TRP A . n A 1 98 LEU 98 98 119 LEU LEU A . n A 1 99 ALA 99 99 120 ALA ALA A . n A 1 100 GLU 100 100 121 GLU GLU A . n A 1 101 ASN 101 101 122 ASN ASN A . n A 1 102 PRO 102 102 123 PRO PRO A . n A 1 103 ASP 103 103 124 ASP ASP A . n A 1 104 SER 104 104 125 SER SER A . n A 1 105 VAL 105 105 126 VAL VAL A . n A 1 106 GLY 106 106 127 GLY GLY A . n A 1 107 MSE 107 107 128 MSE MSE A . n A 1 108 MSE 108 108 129 MSE MSE A . n A 1 109 GLY 109 109 130 GLY GLY A . n A 1 110 TRP 110 110 131 TRP TRP A . n A 1 111 ASP 111 111 132 ASP ASP A . n A 1 112 ALA 112 112 133 ALA ALA A . n A 1 113 VAL 113 113 134 VAL VAL A . n A 1 114 CYS 114 114 135 CYS CYS A . n A 1 115 VAL 115 115 136 VAL VAL A . n A 1 116 ARG 116 116 137 ARG ARG A . n A 1 117 ILE 117 117 138 ILE ILE A . n A 1 118 ALA 118 118 139 ALA ALA A . n A 1 119 THR 119 119 140 THR THR A . n A 1 120 TRP 120 120 141 TRP TRP A . n A 1 121 ALA 121 121 142 ALA ALA A . n A 1 122 LYS 122 122 143 LYS LYS A . n A 1 123 PHE 123 123 144 PHE PHE A . n A 1 124 LYS 124 124 145 LYS LYS A . n A 1 125 ASP 125 125 146 ASP ASP A . n A 1 126 LYS 126 126 147 LYS LYS A . n A 1 127 ALA 127 127 148 ALA ALA A . n A 1 128 THR 128 128 149 THR THR A . n A 1 129 GLY 129 129 150 GLY GLY A . n A 1 130 LYS 130 130 151 LYS LYS A . n A 1 131 ILE 131 131 152 ILE ILE A . n A 1 132 PHE 132 132 153 PHE PHE A . n A 1 133 MSE 133 133 154 MSE MSE A . n A 1 134 ALA 134 134 155 ALA ALA A . n A 1 135 VAL 135 135 156 VAL VAL A . n A 1 136 ASN 136 136 157 ASN ASN A . n A 1 137 THR 137 137 158 THR THR A . n A 1 138 HIS 138 138 159 HIS HIS A . n A 1 139 PHE 139 139 160 PHE PHE A . n A 1 140 ASP 140 140 161 ASP ASP A . n A 1 141 HIS 141 141 162 HIS HIS A . n A 1 142 VAL 142 142 163 VAL VAL A . n A 1 143 GLY 143 143 164 GLY GLY A . n A 1 144 GLU 144 144 165 GLU GLU A . n A 1 145 GLU 145 145 166 GLU GLU A . n A 1 146 ALA 146 146 167 ALA ALA A . n A 1 147 ARG 147 147 168 ARG ARG A . n A 1 148 ARG 148 148 169 ARG ARG A . n A 1 149 GLN 149 149 170 GLN GLN A . n A 1 150 SER 150 150 171 SER SER A . n A 1 151 ALA 151 151 172 ALA ALA A . n A 1 152 LEU 152 152 173 LEU LEU A . n A 1 153 LEU 153 153 174 LEU LEU A . n A 1 154 ILE 154 154 175 ILE ILE A . n A 1 155 ILE 155 155 176 ILE ILE A . n A 1 156 ARG 156 156 177 ARG ARG A . n A 1 157 LYS 157 157 178 LYS LYS A . n A 1 158 ILE 158 158 179 ILE ILE A . n A 1 159 LYS 159 159 180 LYS LYS A . n A 1 160 GLU 160 160 181 GLU GLU A . n A 1 161 ILE 161 161 182 ILE ILE A . n A 1 162 VAL 162 162 183 VAL VAL A . n A 1 163 GLY 163 163 184 GLY GLY A . n A 1 164 GLU 164 164 185 GLU GLU A . n A 1 165 ARG 165 165 186 ARG ARG A . n A 1 166 PRO 166 166 187 PRO PRO A . n A 1 167 ALA 167 167 188 ALA ALA A . n A 1 168 VAL 168 168 189 VAL VAL A . n A 1 169 VAL 169 169 190 VAL VAL A . n A 1 170 THR 170 170 191 THR THR A . n A 1 171 GLY 171 171 192 GLY GLY A . n A 1 172 ASP 172 172 193 ASP ASP A . n A 1 173 PHE 173 173 194 PHE PHE A . n A 1 174 ASN 174 174 195 ASN ASN A . n A 1 175 VAL 175 175 196 VAL VAL A . n A 1 176 THR 176 176 197 THR THR A . n A 1 177 ASP 177 177 198 ASP ASP A . n A 1 178 ALA 178 178 199 ALA ALA A . n A 1 179 SER 179 179 200 SER SER A . n A 1 180 ASP 180 180 201 ASP ASP A . n A 1 181 ALA 181 181 202 ALA ALA A . n A 1 182 TYR 182 182 203 TYR TYR A . n A 1 183 GLU 183 183 204 GLU GLU A . n A 1 184 THR 184 184 205 THR THR A . n A 1 185 ILE 185 185 206 ILE ILE A . n A 1 186 THR 186 186 207 THR THR A . n A 1 187 THR 187 187 208 THR THR A . n A 1 188 ASN 188 188 209 ASN ASN A . n A 1 189 GLU 189 189 210 GLU GLU A . n A 1 190 PHE 190 190 211 PHE PHE A . n A 1 191 VAL 191 191 212 VAL VAL A . n A 1 192 MSE 192 192 213 MSE MSE A . n A 1 193 LYS 193 193 214 LYS LYS A . n A 1 194 ASP 194 194 215 ASP ASP A . n A 1 195 ALA 195 195 216 ALA ALA A . n A 1 196 TYR 196 196 217 TYR TYR A . n A 1 197 LYS 197 197 218 LYS LYS A . n A 1 198 THR 198 198 219 THR THR A . n A 1 199 ALA 199 199 220 ALA ALA A . n A 1 200 ALA 200 200 221 ALA ALA A . n A 1 201 ARG 201 201 222 ARG ARG A . n A 1 202 VAL 202 202 223 VAL VAL A . n A 1 203 THR 203 203 224 THR THR A . n A 1 204 GLY 204 204 225 GLY GLY A . n A 1 205 VAL 205 205 226 VAL VAL A . n A 1 206 ASP 206 206 227 ASP ASP A . n A 1 207 TYR 207 207 228 TYR TYR A . n A 1 208 THR 208 208 229 THR THR A . n A 1 209 PHE 209 209 230 PHE PHE A . n A 1 210 HIS 210 210 231 HIS HIS A . n A 1 211 ASP 211 211 232 ASP ASP A . n A 1 212 PHE 212 212 233 PHE PHE A . n A 1 213 ALA 213 213 234 ALA ALA A . n A 1 214 ARG 214 214 235 ARG ARG A . n A 1 215 ILE 215 215 236 ILE ILE A . n A 1 216 PRO 216 216 237 PRO PRO A . n A 1 217 ALA 217 217 238 ALA ALA A . n A 1 218 GLU 218 218 239 GLU GLU A . n A 1 219 ASP 219 219 240 ASP ASP A . n A 1 220 CYS 220 220 241 CYS CYS A . n A 1 221 GLU 221 221 242 GLU GLU A . n A 1 222 LYS 222 222 243 LYS LYS A . n A 1 223 ILE 223 223 244 ILE ILE A . n A 1 224 ASP 224 224 245 ASP ASP A . n A 1 225 PHE 225 225 246 PHE PHE A . n A 1 226 ILE 226 226 247 ILE ILE A . n A 1 227 PHE 227 227 248 PHE PHE A . n A 1 228 VAL 228 228 249 VAL VAL A . n A 1 229 THR 229 229 250 THR THR A . n A 1 230 PRO 230 230 251 PRO PRO A . n A 1 231 GLN 231 231 252 GLN GLN A . n A 1 232 VAL 232 232 253 VAL VAL A . n A 1 233 LEU 233 233 254 LEU LEU A . n A 1 234 VAL 234 234 255 VAL VAL A . n A 1 235 LYS 235 235 256 LYS LYS A . n A 1 236 SER 236 236 257 SER SER A . n A 1 237 CYS 237 237 258 CYS CYS A . n A 1 238 GLU 238 238 259 GLU GLU A . n A 1 239 ILE 239 239 260 ILE ILE A . n A 1 240 PRO 240 240 261 PRO PRO A . n A 1 241 ALA 241 241 262 ALA ALA A . n A 1 242 GLU 242 242 263 GLU GLU A . n A 1 243 VAL 243 243 264 VAL VAL A . n A 1 244 PRO 244 244 265 PRO PRO A . n A 1 245 GLU 245 245 266 GLU GLU A . n A 1 246 ALA 246 246 267 ALA ALA A . n A 1 247 LEU 247 247 268 LEU LEU A . n A 1 248 LEU 248 248 269 LEU LEU A . n A 1 249 SER 249 249 270 SER SER A . n A 1 250 ASP 250 250 271 ASP ASP A . n A 1 251 HIS 251 251 272 HIS HIS A . n A 1 252 ASN 252 252 273 ASN ASN A . n A 1 253 PRO 253 253 274 PRO PRO A . n A 1 254 GLN 254 254 275 GLN GLN A . n A 1 255 LEU 255 255 276 LEU LEU A . n A 1 256 ALA 256 256 277 ALA ALA A . n A 1 257 ASP 257 257 278 ASP ASP A . n A 1 258 LEU 258 258 279 LEU LEU A . n A 1 259 GLU 259 259 280 GLU GLU A . n A 1 260 LEU 260 260 281 LEU LEU A . n A 1 261 GLU 261 261 282 GLU GLU A . n A 1 262 HIS 262 262 ? ? ? A . n A 1 263 HIS 263 263 ? ? ? A . n A 1 264 HIS 264 264 ? ? ? A . n A 1 265 HIS 265 265 ? ? ? A . n A 1 266 HIS 266 266 ? ? ? A . n A 1 267 HIS 267 267 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 301 HOH HOH A . B 2 HOH 2 302 302 HOH HOH A . B 2 HOH 3 303 303 HOH HOH A . B 2 HOH 4 304 304 HOH HOH A . B 2 HOH 5 305 305 HOH HOH A . B 2 HOH 6 306 306 HOH HOH A . B 2 HOH 7 307 307 HOH HOH A . B 2 HOH 8 308 308 HOH HOH A . B 2 HOH 9 309 309 HOH HOH A . B 2 HOH 10 310 310 HOH HOH A . B 2 HOH 11 311 311 HOH HOH A . B 2 HOH 12 312 312 HOH HOH A . B 2 HOH 13 313 313 HOH HOH A . B 2 HOH 14 314 314 HOH HOH A . B 2 HOH 15 315 315 HOH HOH A . B 2 HOH 16 316 316 HOH HOH A . B 2 HOH 17 317 317 HOH HOH A . B 2 HOH 18 318 318 HOH HOH A . B 2 HOH 19 319 319 HOH HOH A . B 2 HOH 20 320 320 HOH HOH A . B 2 HOH 21 321 321 HOH HOH A . B 2 HOH 22 322 322 HOH HOH A . B 2 HOH 23 323 323 HOH HOH A . B 2 HOH 24 324 324 HOH HOH A . B 2 HOH 25 325 325 HOH HOH A . B 2 HOH 26 326 326 HOH HOH A . B 2 HOH 27 327 327 HOH HOH A . B 2 HOH 28 328 328 HOH HOH A . B 2 HOH 29 329 329 HOH HOH A . B 2 HOH 30 330 330 HOH HOH A . B 2 HOH 31 331 331 HOH HOH A . B 2 HOH 32 332 332 HOH HOH A . B 2 HOH 33 333 333 HOH HOH A . B 2 HOH 34 334 334 HOH HOH A . B 2 HOH 35 335 335 HOH HOH A . B 2 HOH 36 336 336 HOH HOH A . B 2 HOH 37 337 337 HOH HOH A . B 2 HOH 38 338 338 HOH HOH A . B 2 HOH 39 339 339 HOH HOH A . B 2 HOH 40 340 340 HOH HOH A . B 2 HOH 41 341 341 HOH HOH A . B 2 HOH 42 342 342 HOH HOH A . B 2 HOH 43 343 343 HOH HOH A . B 2 HOH 44 344 344 HOH HOH A . B 2 HOH 45 345 345 HOH HOH A . B 2 HOH 46 346 346 HOH HOH A . B 2 HOH 47 347 347 HOH HOH A . B 2 HOH 48 348 348 HOH HOH A . B 2 HOH 49 349 349 HOH HOH A . B 2 HOH 50 350 350 HOH HOH A . B 2 HOH 51 351 351 HOH HOH A . B 2 HOH 52 352 352 HOH HOH A . B 2 HOH 53 353 353 HOH HOH A . B 2 HOH 54 354 354 HOH HOH A . B 2 HOH 55 355 355 HOH HOH A . B 2 HOH 56 356 356 HOH HOH A . B 2 HOH 57 357 357 HOH HOH A . B 2 HOH 58 358 358 HOH HOH A . B 2 HOH 59 359 359 HOH HOH A . B 2 HOH 60 360 360 HOH HOH A . B 2 HOH 61 361 361 HOH HOH A . B 2 HOH 62 362 362 HOH HOH A . B 2 HOH 63 363 363 HOH HOH A . B 2 HOH 64 364 364 HOH HOH A . B 2 HOH 65 365 365 HOH HOH A . B 2 HOH 66 366 366 HOH HOH A . B 2 HOH 67 367 367 HOH HOH A . B 2 HOH 68 368 368 HOH HOH A . B 2 HOH 69 369 369 HOH HOH A . B 2 HOH 70 370 370 HOH HOH A . B 2 HOH 71 371 371 HOH HOH A . B 2 HOH 72 372 372 HOH HOH A . B 2 HOH 73 373 373 HOH HOH A . B 2 HOH 74 374 374 HOH HOH A . B 2 HOH 75 375 375 HOH HOH A . B 2 HOH 76 376 376 HOH HOH A . B 2 HOH 77 377 377 HOH HOH A . B 2 HOH 78 378 378 HOH HOH A . B 2 HOH 79 379 379 HOH HOH A . B 2 HOH 80 380 380 HOH HOH A . B 2 HOH 81 381 381 HOH HOH A . B 2 HOH 82 382 382 HOH HOH A . B 2 HOH 83 383 383 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 44 ? MET SELENOMETHIONINE 2 A MSE 107 A MSE 107 ? MET SELENOMETHIONINE 3 A MSE 108 A MSE 108 ? MET SELENOMETHIONINE 4 A MSE 133 A MSE 133 ? MET SELENOMETHIONINE 5 A MSE 192 A MSE 192 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 3 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXD phasing . ? 2 SOLVE phasing . ? 3 RESOLVE 'model building' . ? 4 CNS refinement 1.2 ? 5 HKL-2000 'data reduction' . ? 6 SCALEPACK 'data scaling' . ? 7 RESOLVE phasing . ? 8 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 12 ? ? 68.12 108.83 2 1 SER A 19 ? ? 47.04 -112.39 3 1 LYS A 73 ? ? -127.21 -95.56 4 1 ASN A 94 ? ? -173.57 -178.35 5 1 PRO A 102 ? ? -59.99 -7.26 6 1 TRP A 110 ? ? 50.23 -139.81 7 1 ALA A 112 ? ? -35.31 146.86 8 1 LYS A 126 ? ? -75.98 49.90 9 1 ALA A 127 ? ? -156.17 -37.33 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 262 ? A HIS 262 2 1 Y 1 A HIS 263 ? A HIS 263 3 1 Y 1 A HIS 264 ? A HIS 264 4 1 Y 1 A HIS 265 ? A HIS 265 5 1 Y 1 A HIS 266 ? A HIS 266 6 1 Y 1 A HIS 267 ? A HIS 267 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #