HEADER HYDROLASE 10-FEB-09 3G7N TITLE CRYSTAL STRUCTURE OF A TRIACYLGLYCEROL LIPASE FROM PENICILLIUM TITLE 2 EXPANSUM AT 1.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM EXPANSUM; SOURCE 3 ORGANISM_TAXID: 27334; SOURCE 4 GENE: PEL; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPIC9K KEYWDS HYDROLASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.B.BIAN,C.YUAN,L.Q.CHEN,J.M.EDWARD,L.LIN,L.G.JIANG,Z.X.HUANG, AUTHOR 2 M.D.HUANG REVDAT 5 30-OCT-24 3G7N 1 REMARK REVDAT 4 01-NOV-17 3G7N 1 REMARK REVDAT 3 29-JAN-14 3G7N 1 JRNL VERSN REVDAT 2 02-MAR-10 3G7N 1 REMARK REVDAT 1 23-FEB-10 3G7N 0 JRNL AUTH C.B.BIAN,C.YUAN,L.Q.CHEN,E.J.MEEHAN,L.G.JIANG,Z.X.HUANG, JRNL AUTH 2 L.LIN,M.D.HUANG JRNL TITL CRYSTAL STRUCTURE OF A TRIACYLGLYCEROL LIPASE FROM JRNL TITL 2 PENICILLIUM EXPANSUM AT 1.3 A DETERMINED BY SULFUR SAD JRNL REF PROTEINS V. 78 1601 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20146362 JRNL DOI 10.1002/PROT.22676 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 116585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 454 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3981 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5409 ; 1.138 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 7.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;34.949 ;24.027 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;11.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2957 ; 0.020 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1898 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2795 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2548 ; 1.650 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4096 ; 2.647 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1433 ; 3.937 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 5.630 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-06; 10-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-ID; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.9; 1.0 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 40.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AS, PEG400, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.30800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.13500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.96200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.13500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.65400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.96200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.13500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.65400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.30800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 70 REMARK 465 PHE A 71 REMARK 465 VAL A 72 REMARK 465 ASN A 73 REMARK 465 SER B 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 314 O HOH B 344 2.13 REMARK 500 C2 PEG A 266 O HOH A 326 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 235 C2 PEG A 264 6455 1.87 REMARK 500 OH TYR B 235 C1 PEG A 264 6455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 30 -123.33 51.88 REMARK 500 SER A 132 -124.15 64.25 REMARK 500 CYS A 228 -145.27 -117.15 REMARK 500 ALA A 236 -150.41 59.47 REMARK 500 LEU A 250 -5.22 81.39 REMARK 500 PHE B 30 -124.69 52.55 REMARK 500 SER B 132 -124.28 63.85 REMARK 500 ASN B 200 35.08 73.97 REMARK 500 CYS B 228 -146.16 -106.72 REMARK 500 ALA B 236 -151.91 59.68 REMARK 500 LEU B 250 -8.15 84.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 245 0.08 SIDE CHAIN REMARK 500 PHE B 245 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 261 REMARK 999 REMARK 999 SEQUENCE REMARK 999 WILD TYPE PROTEIN WAS USED IN THE STUDY. THE SEQUENCE OBTAINED IN REMARK 999 THE STRUCTURE IS RELIABLE. DBREF 3G7N A 1 258 UNP Q9HFW6 Q9HFW6_PENEN 1 258 DBREF 3G7N B 1 258 UNP Q9HFW6 Q9HFW6_PENEN 1 258 SEQADV 3G7N VAL A 35 UNP Q9HFW6 ALA 35 SEE REMARK 999 SEQADV 3G7N VAL B 35 UNP Q9HFW6 ALA 35 SEE REMARK 999 SEQRES 1 A 258 ALA THR ALA ASP ALA ALA ALA PHE PRO ASP LEU HIS ARG SEQRES 2 A 258 ALA ALA LYS LEU SER SER ALA ALA TYR THR GLY CYS ILE SEQRES 3 A 258 GLY LYS ALA PHE ASP VAL THR ILE VAL LYS ARG ILE TYR SEQRES 4 A 258 ASP LEU VAL THR ASP THR ASN GLY PHE VAL GLY TYR SER SEQRES 5 A 258 THR GLU LYS LYS THR ILE ALA VAL ILE MET ARG GLY SER SEQRES 6 A 258 THR THR ILE THR ASP PHE VAL ASN ASP ILE ASP ILE ALA SEQRES 7 A 258 LEU ILE THR PRO GLU LEU SER GLY VAL THR PHE PRO SER SEQRES 8 A 258 ASP VAL LYS ILE MET ARG GLY VAL HIS ARG PRO TRP SER SEQRES 9 A 258 ALA VAL HIS ASP THR ILE ILE THR GLU VAL LYS ALA LEU SEQRES 10 A 258 ILE ALA LYS TYR PRO ASP TYR THR LEU GLU ALA VAL GLY SEQRES 11 A 258 HIS SER LEU GLY GLY ALA LEU THR SER ILE ALA HIS VAL SEQRES 12 A 258 ALA LEU ALA GLN ASN PHE PRO ASP LYS SER LEU VAL SER SEQRES 13 A 258 ASN ALA LEU ASN ALA PHE PRO ILE GLY ASN GLN ALA TRP SEQRES 14 A 258 ALA ASP PHE GLY THR ALA GLN ALA GLY THR PHE ASN ARG SEQRES 15 A 258 GLY ASN ASN VAL LEU ASP GLY VAL PRO ASN MET TYR SER SEQRES 16 A 258 SER PRO LEU VAL ASN PHE LYS HIS TYR GLY THR GLU TYR SEQRES 17 A 258 TYR SER SER GLY THR GLU ALA SER THR VAL LYS CYS GLU SEQRES 18 A 258 GLY GLN ARG ASP LYS SER CYS SER ALA GLY ASN GLY MET SEQRES 19 A 258 TYR ALA VAL THR PRO GLY HIS ILE ALA SER PHE GLY VAL SEQRES 20 A 258 VAL MET LEU THR ALA GLY CYS GLY TYR LEU SER SEQRES 1 B 258 ALA THR ALA ASP ALA ALA ALA PHE PRO ASP LEU HIS ARG SEQRES 2 B 258 ALA ALA LYS LEU SER SER ALA ALA TYR THR GLY CYS ILE SEQRES 3 B 258 GLY LYS ALA PHE ASP VAL THR ILE VAL LYS ARG ILE TYR SEQRES 4 B 258 ASP LEU VAL THR ASP THR ASN GLY PHE VAL GLY TYR SER SEQRES 5 B 258 THR GLU LYS LYS THR ILE ALA VAL ILE MET ARG GLY SER SEQRES 6 B 258 THR THR ILE THR ASP PHE VAL ASN ASP ILE ASP ILE ALA SEQRES 7 B 258 LEU ILE THR PRO GLU LEU SER GLY VAL THR PHE PRO SER SEQRES 8 B 258 ASP VAL LYS ILE MET ARG GLY VAL HIS ARG PRO TRP SER SEQRES 9 B 258 ALA VAL HIS ASP THR ILE ILE THR GLU VAL LYS ALA LEU SEQRES 10 B 258 ILE ALA LYS TYR PRO ASP TYR THR LEU GLU ALA VAL GLY SEQRES 11 B 258 HIS SER LEU GLY GLY ALA LEU THR SER ILE ALA HIS VAL SEQRES 12 B 258 ALA LEU ALA GLN ASN PHE PRO ASP LYS SER LEU VAL SER SEQRES 13 B 258 ASN ALA LEU ASN ALA PHE PRO ILE GLY ASN GLN ALA TRP SEQRES 14 B 258 ALA ASP PHE GLY THR ALA GLN ALA GLY THR PHE ASN ARG SEQRES 15 B 258 GLY ASN ASN VAL LEU ASP GLY VAL PRO ASN MET TYR SER SEQRES 16 B 258 SER PRO LEU VAL ASN PHE LYS HIS TYR GLY THR GLU TYR SEQRES 17 B 258 TYR SER SER GLY THR GLU ALA SER THR VAL LYS CYS GLU SEQRES 18 B 258 GLY GLN ARG ASP LYS SER CYS SER ALA GLY ASN GLY MET SEQRES 19 B 258 TYR ALA VAL THR PRO GLY HIS ILE ALA SER PHE GLY VAL SEQRES 20 B 258 VAL MET LEU THR ALA GLY CYS GLY TYR LEU SER HET SO4 A 259 5 HET SO4 A 260 5 HET SO4 A 261 5 HET PEG A 262 7 HET PEG A 263 7 HET PEG A 264 7 HET PEG A 265 7 HET PEG A 266 7 HET SO4 B 259 5 HET SO4 B 260 5 HET 1PE B 261 16 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 SO4 5(O4 S 2-) FORMUL 6 PEG 5(C4 H10 O3) FORMUL 13 1PE C10 H22 O6 FORMUL 14 HOH *358(H2 O) HELIX 1 1 ALA A 7 GLY A 24 1 18 HELIX 2 2 ARG A 97 TYR A 121 1 25 HELIX 3 3 SER A 132 PHE A 149 1 18 HELIX 4 4 ASN A 166 GLN A 176 1 11 HELIX 5 5 GLY A 189 MET A 193 5 5 HELIX 6 6 CYS A 228 ASN A 232 5 5 HELIX 7 7 THR A 238 HIS A 241 5 4 HELIX 8 8 ALA B 7 GLY B 24 1 18 HELIX 9 9 ASP B 70 ASP B 74 5 5 HELIX 10 10 ARG B 97 TYR B 121 1 25 HELIX 11 11 SER B 132 PHE B 149 1 18 HELIX 12 12 ASN B 166 GLN B 176 1 11 HELIX 13 13 GLY B 189 MET B 193 5 5 HELIX 14 14 THR B 213 SER B 216 5 4 HELIX 15 15 CYS B 228 ASN B 232 5 5 HELIX 16 16 THR B 238 HIS B 241 5 4 SHEET 1 A10 THR A 2 ALA A 3 0 SHEET 2 A10 VAL A 218 LYS A 219 -1 O LYS A 219 N THR A 2 SHEET 3 A10 THR A 206 SER A 210 -1 N TYR A 209 O VAL A 218 SHEET 4 A10 THR A 179 ASN A 185 1 N ASN A 184 O TYR A 208 SHEET 5 A10 LEU A 154 LEU A 159 1 N SER A 156 O ASN A 181 SHEET 6 A10 THR A 125 HIS A 131 1 N GLY A 130 O LEU A 159 SHEET 7 A10 THR A 57 MET A 62 1 N MET A 62 O VAL A 129 SHEET 8 A10 THR A 45 SER A 52 -1 N PHE A 48 O ILE A 61 SHEET 9 A10 VAL A 32 ASP A 40 -1 N THR A 33 O TYR A 51 SHEET 10 A10 LYS A 28 ALA A 29 -1 N ALA A 29 O VAL A 32 SHEET 1 B 2 LEU A 79 ILE A 80 0 SHEET 2 B 2 ILE A 95 MET A 96 -1 O ILE A 95 N ILE A 80 SHEET 1 C 2 ALA A 243 SER A 244 0 SHEET 2 C 2 VAL A 247 VAL A 248 -1 O VAL A 247 N SER A 244 SHEET 1 D10 THR B 2 ALA B 3 0 SHEET 2 D10 VAL B 218 LYS B 219 -1 O LYS B 219 N THR B 2 SHEET 3 D10 THR B 206 SER B 210 -1 N TYR B 209 O VAL B 218 SHEET 4 D10 THR B 179 ASN B 185 1 N ARG B 182 O THR B 206 SHEET 5 D10 LEU B 154 LEU B 159 1 N SER B 156 O ASN B 181 SHEET 6 D10 THR B 125 HIS B 131 1 N GLY B 130 O LEU B 159 SHEET 7 D10 THR B 57 MET B 62 1 N MET B 62 O VAL B 129 SHEET 8 D10 THR B 45 SER B 52 -1 N SER B 52 O THR B 57 SHEET 9 D10 VAL B 32 ASP B 40 -1 N THR B 33 O TYR B 51 SHEET 10 D10 LYS B 28 ALA B 29 -1 N ALA B 29 O VAL B 32 SHEET 1 E 2 LEU B 79 ILE B 80 0 SHEET 2 E 2 ILE B 95 MET B 96 -1 O ILE B 95 N ILE B 80 SHEET 1 F 2 ALA B 243 SER B 244 0 SHEET 2 F 2 VAL B 247 VAL B 248 -1 O VAL B 247 N SER B 244 SSBOND 1 CYS A 25 CYS A 254 1555 1555 2.01 SSBOND 2 CYS A 220 CYS A 228 1555 1555 2.06 SSBOND 3 CYS B 25 CYS B 254 1555 1555 2.04 SSBOND 4 CYS B 220 CYS B 228 1555 1555 2.06 SITE 1 AC1 5 SER A 65 ILE A 68 SER A 132 VAL A 237 SITE 2 AC1 5 PEG A 265 SITE 1 AC2 2 ARG A 101 SER A 227 SITE 1 AC3 7 LYS A 16 PHE A 30 SER A 258 HOH A 376 SITE 2 AC3 7 PRO B 90 SER B 91 HOH B 403 SITE 1 AC4 5 ILE A 77 TYR A 194 SER A 196 TYR A 235 SITE 2 AC4 5 THR B 238 SITE 1 AC5 5 GLU A 221 GLY A 222 GLN A 223 ARG A 224 SITE 2 AC5 5 ASP A 225 SITE 1 AC6 7 THR A 238 HOH A 299 TYR B 194 SER B 195 SITE 2 AC6 7 SER B 196 VAL B 199 TYR B 235 SITE 1 AC7 4 ASP A 74 SO4 A 259 HOH A 324 HOH A 335 SITE 1 AC8 7 VAL A 35 TYR A 51 GLU A 113 HOH A 326 SITE 2 AC8 7 HOH A 431 ASP B 171 HOH B 294 SITE 1 AC9 3 ARG B 224 HOH B 402 HOH B 432 SITE 1 BC1 6 ARG B 101 VAL B 186 LEU B 187 TYR B 209 SITE 2 BC1 6 ASN B 232 HOH B 383 SITE 1 BC2 5 SER A 196 GLY A 233 TYR A 235 HOH A 377 SITE 2 BC2 5 PRO B 239 CRYST1 88.270 88.270 126.616 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007898 0.00000