HEADER TRANSFERASE 11-FEB-09 3G87 TITLE CRYSTAL STRUCTURE OF MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE TITLE 2 FROM BURKHOLDERIA PSEUDOMALLEI USING DRIED SEAWEED AS NUCLEANT OR TITLE 3 PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.39; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: 102, 76, 818, BURPS1710B_A2616, PEDD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SSGCID, NIAID, DECODE BIOSTRUCTURES, DRIED SEAWEED, ACYLTRANSFERASE, KEYWDS 2 TRANSFERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 3 FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3G87 1 SEQADV REVDAT 3 01-NOV-17 3G87 1 REMARK REVDAT 2 13-JUL-11 3G87 1 VERSN REVDAT 1 24-FEB-09 3G87 0 JRNL AUTH T.E.EDWARDS,B.L.STAKER,J.CHRISTENSEN, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF MALONYL COA-ACYL CARRIER PROTEIN JRNL TITL 2 TRANSACYLASE FROM BURKHOLDERIA PSEUDOMALLEI USING DRIED JRNL TITL 3 SEAWEED AS NUCLEANT OR PROTEASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 14506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.768 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2258 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.740 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 5.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.171 ;23.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;18.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1760 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1440 ; 0.960 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2288 ; 1.760 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 818 ; 2.980 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 774 ; 4.741 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3G87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1MLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.5 MG/ML PROTEIN, JCSG+ SCREEN WELL REMARK 280 H6; USED DRIED SEAWEED AS NUCLEANT OR PROTEASE AS DESCRIBED BY REMARK 280 THAKUR ET AL PLOS ONE 2007, 2, E1091 AND D'ARCY ET AL ACTA CRYST REMARK 280 D 2003, 59, 1343; 0.1 M BISTRIS PH 5.5, 17% PEG 10,000, 0.1 M REMARK 280 NH4OAC; CRYSTAL ID 201868H6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.74750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.60100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.59800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.60100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.74750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.59800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 294 REMARK 465 ALA A 295 REMARK 465 ALA A 296 REMARK 465 ALA A 297 REMARK 465 ALA A 298 REMARK 465 THR A 299 REMARK 465 SER A 300 REMARK 465 ALA A 301 REMARK 465 ARG A 302 REMARK 465 ALA A 303 REMARK 465 ARG A 304 REMARK 465 PRO A 305 REMARK 465 THR A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 GLY A 309 REMARK 465 GLU A 310 REMARK 465 PRO A 311 REMARK 465 GLU A 312 REMARK 465 ARG A 313 REMARK 465 PRO A 314 REMARK 465 ALA A 315 REMARK 465 GLN A 316 REMARK 465 GLN A 317 REMARK 465 THR A 318 REMARK 465 ALA A 319 REMARK 465 ALA A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 ARG A 323 REMARK 465 ALA A 324 REMARK 465 SER A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 SER A 329 REMARK 465 ALA A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 GLY A 333 REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 GLU A 336 REMARK 465 ARG A 337 REMARK 465 VAL A 338 REMARK 465 ALA A 339 REMARK 465 ALA A 340 REMARK 465 TRP A 341 REMARK 465 ASN A 342 REMARK 465 ARG A 343 REMARK 465 ASP A 344 REMARK 465 TYR A 345 REMARK 465 PRO A 346 REMARK 465 VAL A 347 REMARK 465 GLY A 348 REMARK 465 THR A 349 REMARK 465 ARG A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 SER A 353 REMARK 465 SER A 354 REMARK 465 LEU A 355 REMARK 465 ILE A 356 REMARK 465 HIS A 357 REMARK 465 ASP A 358 REMARK 465 ASP A 359 REMARK 465 VAL A 360 REMARK 465 LEU A 361 REMARK 465 GLU A 362 REMARK 465 THR A 363 REMARK 465 ARG A 364 REMARK 465 THR A 365 REMARK 465 PRO A 366 REMARK 465 ALA A 367 REMARK 465 THR A 368 REMARK 465 VAL A 369 REMARK 465 LEU A 370 REMARK 465 PHE A 371 REMARK 465 GLY A 372 REMARK 465 HIS A 373 REMARK 465 ARG A 374 REMARK 465 ALA A 375 REMARK 465 ALA A 376 REMARK 465 VAL A 377 REMARK 465 TYR A 378 REMARK 465 MET A 379 REMARK 465 LYS A 380 REMARK 465 GLY A 381 REMARK 465 TYR A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 TYR A 385 REMARK 465 PHE A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 ALA A 389 REMARK 465 GLU A 390 REMARK 465 VAL A 391 REMARK 465 THR A 392 REMARK 465 PRO A 393 REMARK 465 ALA A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 160 O HOH A 565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 95 CD GLU A 95 OE2 -0.069 REMARK 500 GLU A 146 CD GLU A 146 OE1 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 5 -107.98 73.55 REMARK 500 PHE A 29 50.25 -107.47 REMARK 500 ASP A 51 58.65 38.42 REMARK 500 SER A 92 -98.24 59.09 REMARK 500 ASN A 134 23.12 81.07 REMARK 500 ASP A 182 -116.82 51.35 REMARK 500 VAL A 184 124.08 -37.60 REMARK 500 ARG A 250 66.71 -102.94 REMARK 500 THR A 291 73.86 64.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00141.C RELATED DB: TARGETDB DBREF 3G87 A 5 394 UNP Q3JF88 Q3JF88_BURP1 1 390 SEQADV 3G87 GLY A 1 UNP Q3JF88 EXPRESSION TAG SEQADV 3G87 PRO A 2 UNP Q3JF88 EXPRESSION TAG SEQADV 3G87 GLY A 3 UNP Q3JF88 EXPRESSION TAG SEQADV 3G87 SER A 4 UNP Q3JF88 EXPRESSION TAG SEQRES 1 A 394 GLY PRO GLY SER MET LEU ASN THR PHE MET PHE PRO GLY SEQRES 2 A 394 GLN GLY SER GLN ALA LYS GLY MET GLY GLY ALA LEU PHE SEQRES 3 A 394 ASP ARG PHE ALA ASP LEU THR ALA GLN ALA ASP ALA VAL SEQRES 4 A 394 LEU GLY TYR SER ILE ARG ALA LEU CYS VAL ASP ASP PRO SEQRES 5 A 394 ARG ASP GLU LEU GLY ARG THR GLN PHE THR GLN PRO ALA SEQRES 6 A 394 LEU TYR VAL VAL ASN ALA LEU THR TYR TYR ALA LYS CYS SEQRES 7 A 394 GLU ASP SER GLY GLU THR PRO ASP PHE LEU ALA GLY HIS SEQRES 8 A 394 SER LEU GLY GLU PHE ASN ALA LEU LEU ALA ALA GLY CYS SEQRES 9 A 394 PHE ASP PHE GLU THR GLY LEU LYS LEU VAL ALA ARG ARG SEQRES 10 A 394 ALA GLU LEU MET SER GLN ALA ARG ASP GLY ALA MET ALA SEQRES 11 A 394 ALA ILE VAL ASN ALA SER ARG GLU GLN ILE GLU ARG THR SEQRES 12 A 394 LEU ASP GLU HIS GLY LEU VAL ASP THR ALA ILE ALA ASN SEQRES 13 A 394 ASP ASN THR PRO SER GLN LEU VAL ILE SER GLY PRO ALA SEQRES 14 A 394 HIS GLU ILE ALA ARG ALA GLU ALA LEU PHE GLN HIS ASP SEQRES 15 A 394 ARG VAL ARG TYR LEU ARG LEU ASN THR SER GLY ALA PHE SEQRES 16 A 394 HIS SER LYS PHE MET ARG PRO ALA GLN GLN ALA PHE ALA SEQRES 17 A 394 ALA HIS LEU GLN SER PHE ARG LEU ALA ASP PRO ALA ILE SEQRES 18 A 394 PRO VAL ILE SER ASN VAL SER ALA ARG PRO TYR GLU ASN SEQRES 19 A 394 GLY ARG VAL SER GLU GLY LEU ALA GLN GLN ILE ALA SER SEQRES 20 A 394 PRO VAL ARG TRP CYS GLU SER ILE ARG TYR LEU LEU ALA SEQRES 21 A 394 LEU ALA ALA GLU ARG GLY GLU ALA ILE GLU PHE THR GLU SEQRES 22 A 394 LEU GLY HIS GLY ASP VAL LEU THR ARG LEU VAL HIS THR SEQRES 23 A 394 ILE ARG ARG GLN THR PRO ALA PRO ALA ALA ALA ALA THR SEQRES 24 A 394 SER ALA ARG ALA ARG PRO THR PRO PRO GLY GLU PRO GLU SEQRES 25 A 394 ARG PRO ALA GLN GLN THR ALA ALA ALA PRO ARG ALA SER SEQRES 26 A 394 ASP SER ALA SER ALA SER LEU GLY ALA ALA GLU ARG VAL SEQRES 27 A 394 ALA ALA TRP ASN ARG ASP TYR PRO VAL GLY THR ARG VAL SEQRES 28 A 394 ARG SER SER LEU ILE HIS ASP ASP VAL LEU GLU THR ARG SEQRES 29 A 394 THR PRO ALA THR VAL LEU PHE GLY HIS ARG ALA ALA VAL SEQRES 30 A 394 TYR MET LYS GLY TYR ASN GLY TYR PHE ASP LEU ALA GLU SEQRES 31 A 394 VAL THR PRO ALA FORMUL 2 HOH *191(H2 O) HELIX 1 1 ALA A 24 PHE A 29 1 6 HELIX 2 2 PHE A 29 GLY A 41 1 13 HELIX 3 3 SER A 43 ASP A 50 1 8 HELIX 4 4 ARG A 58 GLY A 82 1 25 HELIX 5 5 LEU A 93 ALA A 102 1 10 HELIX 6 6 ASP A 106 ALA A 124 1 19 HELIX 7 7 SER A 136 HIS A 147 1 12 HELIX 8 8 ALA A 169 GLU A 176 1 8 HELIX 9 9 ALA A 177 PHE A 179 5 3 HELIX 10 10 SER A 197 PHE A 199 5 3 HELIX 11 11 MET A 200 GLN A 212 1 13 HELIX 12 12 ARG A 236 GLN A 244 1 9 HELIX 13 13 ILE A 245 SER A 247 5 3 HELIX 14 14 ARG A 250 ARG A 265 1 16 HELIX 15 15 ASP A 278 GLN A 290 1 13 SHEET 1 A 4 VAL A 223 ILE A 224 0 SHEET 2 A 4 PHE A 87 GLY A 90 1 N LEU A 88 O ILE A 224 SHEET 3 A 4 LEU A 6 PHE A 11 1 N PHE A 9 O PHE A 87 SHEET 4 A 4 ILE A 269 GLU A 273 1 O THR A 272 N THR A 8 SHEET 1 B 4 ALA A 153 THR A 159 0 SHEET 2 B 4 GLN A 162 PRO A 168 -1 O VAL A 164 N ALA A 155 SHEET 3 B 4 GLY A 127 VAL A 133 -1 N ILE A 132 O LEU A 163 SHEET 4 B 4 ARG A 185 ARG A 188 -1 O LEU A 187 N ALA A 131 CRYST1 57.495 69.196 83.202 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012019 0.00000