HEADER TRANSFERASE 11-FEB-09 3G89 TITLE T. THERMOPHILUS 16S RRNA G527 METHYLTRANSFERASE IN COMPLEX WITH ADOMET TITLE 2 AND AMP IN SPACE GROUP P61 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE G; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 16S RRNA 7-METHYLGUANOSINE METHYLTRANSFERASE, 16S RRNA M7G COMPND 5 METHYLTRANSFERASE, GLUCOSE-INHIBITED DIVISION PROTEIN B; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: GIDB, RSMG, TTHA1971; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS METHYLTRANSFERASE, 16S RRNA METHYLTRANSFERASE, TRANSLATION, KEYWDS 2 CYTOPLASM, RRNA PROCESSING, S-ADENOSYL-L-METHIONINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,S.T.GREGORY,R.BELARDINELLI,C.GUALERZI,A.E.DAHLBERG,G.JOGL REVDAT 5 24-JUL-19 3G89 1 REMARK LINK REVDAT 4 01-NOV-17 3G89 1 REMARK REVDAT 3 08-SEP-09 3G89 1 JRNL REVDAT 2 18-AUG-09 3G89 1 HET HETATM REVDAT 1 30-JUN-09 3G89 0 JRNL AUTH S.T.GREGORY,H.DEMIRCI,R.BELARDINELLI,T.MONSHUPANEE, JRNL AUTH 2 C.GUALERZI,A.E.DAHLBERG,G.JOGL JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF THE THERMUS JRNL TITL 2 THERMOPHILUS 16S RRNA METHYLTRANSFERASE RSMG JRNL REF RNA V. 15 1693 2009 JRNL REFN ISSN 1355-8382 JRNL PMID 19622680 JRNL DOI 10.1261/RNA.1652709 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 84494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7033 - 4.6546 0.99 2862 166 0.1796 0.1857 REMARK 3 2 4.6546 - 3.6970 0.99 2858 134 0.1380 0.1799 REMARK 3 3 3.6970 - 3.2304 0.87 2503 129 0.1464 0.1656 REMARK 3 4 3.2304 - 2.9354 1.00 2865 154 0.1621 0.1866 REMARK 3 5 2.9354 - 2.7252 1.00 2844 155 0.1731 0.1822 REMARK 3 6 2.7252 - 2.5646 1.00 2853 144 0.1617 0.1994 REMARK 3 7 2.5646 - 2.4362 1.00 2871 153 0.1698 0.1767 REMARK 3 8 2.4362 - 2.3302 1.00 2850 153 0.1673 0.1998 REMARK 3 9 2.3302 - 2.2406 0.69 1969 120 0.2641 0.3137 REMARK 3 10 2.2406 - 2.1633 0.69 1958 102 0.1961 0.2077 REMARK 3 11 2.1633 - 2.0956 1.00 2850 132 0.1696 0.1811 REMARK 3 12 2.0956 - 2.0358 1.00 2848 157 0.1596 0.2068 REMARK 3 13 2.0358 - 1.9822 1.00 2845 157 0.1735 0.1869 REMARK 3 14 1.9822 - 1.9338 0.86 2223 118 0.2012 0.2329 REMARK 3 15 1.9338 - 1.8899 0.60 845 42 0.2235 0.3518 REMARK 3 16 1.8899 - 1.8497 0.92 2316 145 0.1902 0.2242 REMARK 3 17 1.8497 - 1.8127 1.00 2853 166 0.1754 0.2029 REMARK 3 18 1.8127 - 1.7785 1.00 2850 151 0.1712 0.2112 REMARK 3 19 1.7785 - 1.7467 1.00 2847 137 0.1700 0.2227 REMARK 3 20 1.7467 - 1.7171 1.00 2810 161 0.1711 0.2101 REMARK 3 21 1.7171 - 1.6894 1.00 2884 147 0.1685 0.2075 REMARK 3 22 1.6894 - 1.6634 1.00 2829 156 0.1786 0.2401 REMARK 3 23 1.6634 - 1.6390 1.00 2893 124 0.1762 0.2323 REMARK 3 24 1.6390 - 1.6159 1.00 2857 142 0.1780 0.2157 REMARK 3 25 1.6159 - 1.5940 1.00 2853 133 0.1897 0.2173 REMARK 3 26 1.5940 - 1.5733 1.00 2839 134 0.1909 0.1898 REMARK 3 27 1.5733 - 1.5537 1.00 2847 163 0.1917 0.2456 REMARK 3 28 1.5537 - 1.5350 1.00 2888 141 0.2027 0.2394 REMARK 3 29 1.5350 - 1.5171 1.00 2824 159 0.2095 0.2498 REMARK 3 30 1.5171 - 1.5000 0.99 2830 155 0.2162 0.2398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 67.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.55500 REMARK 3 B22 (A**2) : -0.55500 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3920 REMARK 3 ANGLE : 2.124 5346 REMARK 3 CHIRALITY : 0.129 609 REMARK 3 PLANARITY : 0.012 687 REMARK 3 DIHEDRAL : 17.825 1526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 62.0635 -6.8942 19.6384 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.0824 REMARK 3 T33: 0.1004 T12: -0.0079 REMARK 3 T13: 0.0147 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 0.9301 L22: 0.6632 REMARK 3 L33: 0.4745 L12: 0.7602 REMARK 3 L13: -0.0507 L23: 0.0537 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.1083 S13: -0.2324 REMARK 3 S21: -0.0389 S22: 0.0772 S23: -0.2487 REMARK 3 S31: -0.0719 S32: 0.0078 S33: -0.0343 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84726 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RIGID BODY REFINEMENT REFMAC 5.5.0044 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG8000, 100 MM IMIDAZOLE REMARK 280 (PH 8.0), MICROBATCH TECHNIQUE UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.93567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.87133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.90350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.83917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.96783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 47 REMARK 465 GLY A 48 REMARK 465 LYS A 49 REMARK 465 VAL A 50 REMARK 465 ASN A 51 REMARK 465 LEU A 52 REMARK 465 THR A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 ARG A 56 REMARK 465 SER B 47 REMARK 465 GLY B 48 REMARK 465 LYS B 49 REMARK 465 VAL B 50 REMARK 465 ASN B 51 REMARK 465 LEU B 52 REMARK 465 THR B 53 REMARK 465 ALA B 54 REMARK 465 LEU B 55 REMARK 465 ARG B 56 REMARK 465 GLY B 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 102 O HOH A 360 1.95 REMARK 500 O HOH A 736 O HOH A 791 1.96 REMARK 500 O HOH A 785 O HOH A 801 1.98 REMARK 500 O LYS B 5 O HOH B 1092 2.02 REMARK 500 O HOH A 630 O HOH A 792 2.03 REMARK 500 O HOH A 771 O HOH A 808 2.03 REMARK 500 O HOH A 710 O HOH A 713 2.03 REMARK 500 O HOH B 1102 O HOH B 1114 2.03 REMARK 500 O GLN A 213 O HOH A 817 2.04 REMARK 500 O HOH B 829 O HOH B 1129 2.05 REMARK 500 O HOH B 1060 O HOH B 1063 2.05 REMARK 500 O HOH A 780 O HOH A 817 2.06 REMARK 500 O HOH A 305 O HOH A 464 2.06 REMARK 500 O HOH A 636 O HOH A 736 2.07 REMARK 500 O HOH B 817 O HOH B 1141 2.07 REMARK 500 O HOH B 913 O HOH B 919 2.07 REMARK 500 O HOH B 1024 O HOH B 1068 2.07 REMARK 500 O HOH B 777 O HOH B 1117 2.08 REMARK 500 O HOH B 955 O HOH B 956 2.08 REMARK 500 NH1 ARG B 102 O HOH B 630 2.08 REMARK 500 O HOH A 511 O HOH A 513 2.09 REMARK 500 O HOH B 1075 O HOH B 1082 2.09 REMARK 500 O HOH A 414 O HOH A 733 2.10 REMARK 500 O HOH B 1095 O HOH B 1119 2.10 REMARK 500 O HOH A 756 O HOH A 779 2.10 REMARK 500 O HOH A 626 O HOH A 670 2.10 REMARK 500 O HOH B 915 O HOH B 1118 2.10 REMARK 500 O HOH B 939 O HOH B 942 2.11 REMARK 500 O HOH A 624 O HOH A 666 2.11 REMARK 500 O HOH B 901 O HOH B 1066 2.11 REMARK 500 N GLY B 8 O HOH B 1110 2.12 REMARK 500 O HOH B 984 O HOH B 1129 2.12 REMARK 500 O HOH A 400 O HOH A 801 2.12 REMARK 500 O HOH A 592 O HOH A 787 2.12 REMARK 500 O HOH B 941 O HOH B 1070 2.12 REMARK 500 O HOH B 999 O HOH B 1092 2.12 REMARK 500 O HOH A 635 O HOH A 798 2.13 REMARK 500 O HOH A 467 O HOH A 702 2.13 REMARK 500 O HOH B 914 O HOH B 937 2.13 REMARK 500 O HOH A 692 O HOH B 1038 2.13 REMARK 500 O HOH A 789 O HOH B 1097 2.13 REMARK 500 NE ARG B 239 O HOH B 1104 2.13 REMARK 500 O HOH B 764 O HOH B 812 2.14 REMARK 500 O HOH B 724 O HOH B 1085 2.14 REMARK 500 O HOH B 1062 O HOH B 1109 2.14 REMARK 500 NH2 ARG A 15 O HOH A 643 2.14 REMARK 500 O HOH A 558 O HOH A 579 2.14 REMARK 500 O HOH B 1043 O HOH B 1046 2.15 REMARK 500 O HOH B 660 O HOH B 938 2.15 REMARK 500 O HOH A 421 O HOH B 830 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 65 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1076 O HOH B 1080 6545 2.01 REMARK 500 O HOH A 773 O HOH A 781 6555 2.04 REMARK 500 O HOH B 874 O HOH B 1041 6545 2.11 REMARK 500 O HOH A 667 O HOH B 1003 5664 2.13 REMARK 500 O HOH A 468 O HOH B 883 5554 2.15 REMARK 500 O HOH A 719 O HOH B 818 5554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 58 CB GLU A 58 CG 0.129 REMARK 500 GLU B 121 CG GLU B 121 CD 0.094 REMARK 500 GLU B 121 CD GLU B 121 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU A 216 C - N - CA ANGL. DEV. = -23.9 DEGREES REMARK 500 MET B 1 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 LYS B 64 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG B 138 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU B 216 C - N - CA ANGL. DEV. = -23.9 DEGREES REMARK 500 ARG B 238 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 81 47.97 -81.25 REMARK 500 PRO B 81 47.85 -83.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G88 RELATED DB: PDB REMARK 900 RELATED ID: 3G8A RELATED DB: PDB REMARK 900 RELATED ID: 3G8B RELATED DB: PDB DBREF 3G89 A 1 249 UNP Q9LCY2 RSMG_THET8 1 249 DBREF 3G89 B 1 249 UNP Q9LCY2 RSMG_THET8 1 249 SEQRES 1 A 249 MET PHE HIC GLY LYS HIS PRO GLY GLY LEU SER GLU ARG SEQRES 2 A 249 GLY ARG ALA LEU LEU LEU GLU GLY GLY LYS ALA LEU GLY SEQRES 3 A 249 LEU ASP LEU LYS PRO HIS LEU GLU ALA PHE SER ARG LEU SEQRES 4 A 249 TYR ALA LEU LEU GLN GLU ALA SER GLY LYS VAL ASN LEU SEQRES 5 A 249 THR ALA LEU ARG GLY GLU GLU GLU VAL VAL VAL LYS HIS SEQRES 6 A 249 PHE LEU ASP SER LEU THR LEU LEU ARG LEU PRO LEU TRP SEQRES 7 A 249 GLN GLY PRO LEU ARG VAL LEU ASP LEU GLY THR GLY ALA SEQRES 8 A 249 GLY PHE PRO GLY LEU PRO LEU LYS ILE VAL ARG PRO GLU SEQRES 9 A 249 LEU GLU LEU VAL LEU VAL ASP ALA THR ARG LYS LYS VAL SEQRES 10 A 249 ALA PHE VAL GLU ARG ALA ILE GLU VAL LEU GLY LEU LYS SEQRES 11 A 249 GLY ALA ARG ALA LEU TRP GLY ARG ALA GLU VAL LEU ALA SEQRES 12 A 249 ARG GLU ALA GLY HIS ARG GLU ALA TYR ALA ARG ALA VAL SEQRES 13 A 249 ALA ARG ALA VAL ALA PRO LEU CYS VAL LEU SER GLU LEU SEQRES 14 A 249 LEU LEU PRO PHE LEU GLU VAL GLY GLY ALA ALA VAL ALA SEQRES 15 A 249 MET LYS GLY PRO ARG VAL GLU GLU GLU LEU ALA PRO LEU SEQRES 16 A 249 PRO PRO ALA LEU GLU ARG LEU GLY GLY ARG LEU GLY GLU SEQRES 17 A 249 VAL LEU ALA LEU GLN LEU PRO LEU SER GLY GLU ALA ARG SEQRES 18 A 249 HIS LEU VAL VAL LEU GLU LYS THR ALA PRO THR PRO PRO SEQRES 19 A 249 ALA TYR PRO ARG ARG PRO GLY VAL PRO GLU ARG HIS PRO SEQRES 20 A 249 LEU CYS SEQRES 1 B 249 MET PHE HIC GLY LYS HIS PRO GLY GLY LEU SER GLU ARG SEQRES 2 B 249 GLY ARG ALA LEU LEU LEU GLU GLY GLY LYS ALA LEU GLY SEQRES 3 B 249 LEU ASP LEU LYS PRO HIS LEU GLU ALA PHE SER ARG LEU SEQRES 4 B 249 TYR ALA LEU LEU GLN GLU ALA SER GLY LYS VAL ASN LEU SEQRES 5 B 249 THR ALA LEU ARG GLY GLU GLU GLU VAL VAL VAL LYS HIS SEQRES 6 B 249 PHE LEU ASP SER LEU THR LEU LEU ARG LEU PRO LEU TRP SEQRES 7 B 249 GLN GLY PRO LEU ARG VAL LEU ASP LEU GLY THR GLY ALA SEQRES 8 B 249 GLY PHE PRO GLY LEU PRO LEU LYS ILE VAL ARG PRO GLU SEQRES 9 B 249 LEU GLU LEU VAL LEU VAL ASP ALA THR ARG LYS LYS VAL SEQRES 10 B 249 ALA PHE VAL GLU ARG ALA ILE GLU VAL LEU GLY LEU LYS SEQRES 11 B 249 GLY ALA ARG ALA LEU TRP GLY ARG ALA GLU VAL LEU ALA SEQRES 12 B 249 ARG GLU ALA GLY HIS ARG GLU ALA TYR ALA ARG ALA VAL SEQRES 13 B 249 ALA ARG ALA VAL ALA PRO LEU CYS VAL LEU SER GLU LEU SEQRES 14 B 249 LEU LEU PRO PHE LEU GLU VAL GLY GLY ALA ALA VAL ALA SEQRES 15 B 249 MET LYS GLY PRO ARG VAL GLU GLU GLU LEU ALA PRO LEU SEQRES 16 B 249 PRO PRO ALA LEU GLU ARG LEU GLY GLY ARG LEU GLY GLU SEQRES 17 B 249 VAL LEU ALA LEU GLN LEU PRO LEU SER GLY GLU ALA ARG SEQRES 18 B 249 HIS LEU VAL VAL LEU GLU LYS THR ALA PRO THR PRO PRO SEQRES 19 B 249 ALA TYR PRO ARG ARG PRO GLY VAL PRO GLU ARG HIS PRO SEQRES 20 B 249 LEU CYS MODRES 3G89 HIC A 3 HIS 4-METHYL-HISTIDINE MODRES 3G89 HIC B 3 HIS 4-METHYL-HISTIDINE HET HIC A 3 11 HET HIC B 3 11 HET SAM A 303 27 HET AMP A 304 23 HET SAM B 303 27 HET AMP B 304 23 HETNAM HIC 4-METHYL-HISTIDINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 1 HIC 2(C7 H11 N3 O2) FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *1026(H2 O) HELIX 1 1 SER A 11 LEU A 25 1 15 HELIX 2 2 LEU A 29 PRO A 31 5 3 HELIX 3 3 HIS A 32 ALA A 46 1 15 HELIX 4 4 GLY A 57 THR A 71 1 15 HELIX 5 5 LEU A 72 LEU A 75 5 4 HELIX 6 6 PRO A 94 ARG A 102 1 9 HELIX 7 7 THR A 113 GLY A 128 1 16 HELIX 8 8 ARG A 138 ALA A 143 1 6 HELIX 9 9 PRO A 162 LEU A 171 1 10 HELIX 10 10 VAL A 188 ALA A 193 1 6 HELIX 11 11 PRO A 194 LEU A 202 1 9 HELIX 12 12 GLY A 241 HIS A 246 1 6 HELIX 13 13 SER B 11 LEU B 25 1 15 HELIX 14 14 LEU B 29 PRO B 31 5 3 HELIX 15 15 HIS B 32 ALA B 46 1 15 HELIX 16 16 GLU B 58 THR B 71 1 14 HELIX 17 17 LEU B 72 LEU B 75 5 4 HELIX 18 18 PRO B 94 ARG B 102 1 9 HELIX 19 19 THR B 113 GLY B 128 1 16 HELIX 20 20 ARG B 138 ALA B 143 1 6 HELIX 21 21 PRO B 162 LEU B 171 1 10 HELIX 22 22 VAL B 188 ALA B 193 1 6 HELIX 23 23 PRO B 194 LEU B 202 1 9 HELIX 24 24 GLY B 241 HIS B 246 1 6 SHEET 1 A 7 ALA A 132 TRP A 136 0 SHEET 2 A 7 GLU A 106 ASP A 111 1 N LEU A 109 O LEU A 135 SHEET 3 A 7 ARG A 83 LEU A 87 1 N ASP A 86 O VAL A 108 SHEET 4 A 7 TYR A 152 ARG A 158 1 O VAL A 156 N LEU A 87 SHEET 5 A 7 LEU A 174 LYS A 184 1 O GLU A 175 N TYR A 152 SHEET 6 A 7 ALA A 220 LYS A 228 -1 O LEU A 226 N ALA A 180 SHEET 7 A 7 GLY A 204 GLN A 213 -1 N GLY A 207 O VAL A 225 SHEET 1 B 7 ALA B 132 TRP B 136 0 SHEET 2 B 7 GLU B 106 ASP B 111 1 N LEU B 109 O LEU B 135 SHEET 3 B 7 ARG B 83 LEU B 87 1 N ASP B 86 O VAL B 108 SHEET 4 B 7 TYR B 152 ARG B 158 1 O VAL B 156 N LEU B 87 SHEET 5 B 7 LEU B 174 LYS B 184 1 O GLU B 175 N TYR B 152 SHEET 6 B 7 ALA B 220 LYS B 228 -1 O VAL B 224 N ALA B 182 SHEET 7 B 7 GLY B 204 GLN B 213 -1 N GLY B 207 O VAL B 225 SSBOND 1 CYS A 164 CYS A 249 1555 1555 2.03 SSBOND 2 CYS B 164 CYS B 249 1555 1555 2.03 LINK C PHE A 2 N HIC A 3 1555 1555 1.32 LINK C HIC A 3 N GLY A 4 1555 1555 1.34 LINK C PHE B 2 N HIC B 3 1555 1555 1.33 LINK C HIC B 3 N GLY B 4 1555 1555 1.34 LINK N MET A 1 CZ HIC A 3 1555 1555 1.50 LINK N MET B 1 CZ HIC B 3 1555 1555 1.51 CISPEP 1 PHE A 93 PRO A 94 0 9.23 CISPEP 2 TYR A 236 PRO A 237 0 -4.93 CISPEP 3 PHE B 93 PRO B 94 0 8.87 CISPEP 4 TYR B 236 PRO B 237 0 -3.92 SITE 1 AC1 20 GLY A 88 THR A 89 PHE A 93 ASP A 111 SITE 2 AC1 20 ALA A 112 THR A 113 LYS A 116 GLY A 137 SITE 3 AC1 20 ARG A 138 ALA A 139 GLU A 140 ARG A 158 SITE 4 AC1 20 ALA A 159 HOH A 306 HOH A 315 HOH A 333 SITE 5 AC1 20 HOH A 342 HOH A 356 HOH A 425 HOH A 430 SITE 1 AC2 16 ARG A 245 HIS A 246 HOH A 350 HOH A 374 SITE 2 AC2 16 HOH A 473 HOH A 497 HOH A 502 HOH A 524 SITE 3 AC2 16 HOH A 545 HOH A 547 HOH A 608 HOH A 609 SITE 4 AC2 16 HOH A 741 HOH A 792 ARG B 201 ARG B 245 SITE 1 AC3 18 GLY B 88 THR B 89 PHE B 93 ASP B 111 SITE 2 AC3 18 ALA B 112 THR B 113 GLY B 137 ARG B 138 SITE 3 AC3 18 ALA B 139 GLU B 140 ARG B 158 ALA B 159 SITE 4 AC3 18 HOH B 632 HOH B 639 HOH B 662 HOH B 754 SITE 5 AC3 18 HOH B1012 HOH B1095 SITE 1 AC4 18 ARG A 201 ARG A 245 HOH A 758 ARG B 239 SITE 2 AC4 18 ARG B 245 HIS B 246 HOH B 670 HOH B 724 SITE 3 AC4 18 HOH B 753 HOH B 766 HOH B 776 HOH B 817 SITE 4 AC4 18 HOH B 821 HOH B 879 HOH B 892 HOH B 906 SITE 5 AC4 18 HOH B1085 HOH B1107 CRYST1 77.212 77.212 167.807 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012951 0.007477 0.000000 0.00000 SCALE2 0.000000 0.014955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005959 0.00000