HEADER LIGASE 12-FEB-09 3G8C TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE IN COMPLEX WITH BIOTIN, TITLE 2 BICARBONATE, ADP AND MG ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: ACCC, B3256, FABG, JW3224; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ATP-GRASP, CARBOXYLASE, BIOTIN-DEPENDENT, FATTY ACID SYNTHESIS, KEYWDS 2 SUBSTRATES BOUND, ATP-BINDING, BIOTIN, FATTY ACID BIOSYNTHESIS, KEYWDS 3 LIGASE, LIPID SYNTHESIS, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.CHOU,L.P.YU,L.TONG REVDAT 5 21-FEB-24 3G8C 1 LINK REVDAT 4 01-NOV-17 3G8C 1 REMARK REVDAT 3 01-FEB-17 3G8C 1 TITLE VERSN REVDAT 2 05-MAY-09 3G8C 1 JRNL REVDAT 1 03-MAR-09 3G8C 0 JRNL AUTH C.Y.CHOU,L.P.YU,L.TONG JRNL TITL CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE IN COMPLEX WITH JRNL TITL 2 SUBSTRATES AND IMPLICATIONS FOR ITS CATALYTIC MECHANISM. JRNL REF J.BIOL.CHEM. V. 284 11690 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19213731 JRNL DOI 10.1074/JBC.M805783200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 72986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3678 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 288 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6842 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 856 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7066 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9546 ; 1.184 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 886 ; 4.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;34.596 ;23.631 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1222 ;14.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;16.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1048 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5336 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3505 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4881 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 843 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.024 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 109 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 117 ; 0.470 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4549 ; 0.581 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7058 ; 0.997 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2825 ; 1.532 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2488 ; 2.581 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 444 6 REMARK 3 1 B 1 B 444 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 3421 ; 0.510 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 3421 ; 4.970 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6410 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3350, 0.12M LI2SO4, 3.9% REMARK 280 SORBITOL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.65850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.74300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.08300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.74300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.65850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.08300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 526 O HOH A 813 2.03 REMARK 500 O HOH B 453 O HOH B 811 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 821 O HOH B 660 2655 2.02 REMARK 500 O HOH A 861 O HOH B 707 2655 2.03 REMARK 500 O HOH A 831 O HOH B 790 2655 2.06 REMARK 500 O HOH A 835 O HOH B 852 2655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -87.37 -130.53 REMARK 500 PHE A 84 -112.89 42.17 REMARK 500 ASP A 141 90.74 -64.77 REMARK 500 LEU A 178 -0.47 -149.52 REMARK 500 ALA A 192 -60.13 -105.60 REMARK 500 ALA A 226 -158.32 56.30 REMARK 500 ASN B 9 -169.65 -166.02 REMARK 500 SER B 59 -83.91 -127.40 REMARK 500 PHE B 84 -122.04 56.70 REMARK 500 LEU B 225 67.22 -119.71 REMARK 500 ALA B 226 -153.54 55.37 REMARK 500 PHE B 347 18.64 59.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE1 REMARK 620 2 GLU A 288 OE1 104.8 REMARK 620 3 HOH A 538 O 101.7 81.8 REMARK 620 4 HOH A 640 O 75.5 179.3 97.5 REMARK 620 5 ADP A1000 O1B 161.7 86.9 93.9 93.0 REMARK 620 6 ADP A1000 O2A 88.6 83.3 163.6 97.4 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 276 OE1 REMARK 620 2 GLU B 288 OE2 102.4 REMARK 620 3 HOH B 753 O 102.3 79.8 REMARK 620 4 HOH B 804 O 68.9 165.6 112.8 REMARK 620 5 ADP B1001 O1B 147.9 87.2 109.6 94.6 REMARK 620 6 ADP B1001 O2A 85.4 75.2 154.9 92.3 67.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN A1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN B1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT B1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G8D RELATED DB: PDB DBREF 3G8C A 1 444 UNP P24182 ACCC_ECOLI 1 444 DBREF 3G8C B 1 444 UNP P24182 ACCC_ECOLI 1 444 SEQRES 1 A 444 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 A 444 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 A 444 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 A 444 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 A 444 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 A 444 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 A 444 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 A 444 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 A 444 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 A 444 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 A 444 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 A 444 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 A 444 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 A 444 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 A 444 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 A 444 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 A 444 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 A 444 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 A 444 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 A 444 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 A 444 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 A 444 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 A 444 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 A 444 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 A 444 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 A 444 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 A 444 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 A 444 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 A 444 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 A 444 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 A 444 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 A 444 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 A 444 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 A 444 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 A 444 LYS LEU SEQRES 1 B 444 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 B 444 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 B 444 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 B 444 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 B 444 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 B 444 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 B 444 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 B 444 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 B 444 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 B 444 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 B 444 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 B 444 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 B 444 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 B 444 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 B 444 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 B 444 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 B 444 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 B 444 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 B 444 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 B 444 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 B 444 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 B 444 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 B 444 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 B 444 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 B 444 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 B 444 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 B 444 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 B 444 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 B 444 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 B 444 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 B 444 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 B 444 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 B 444 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 B 444 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 B 444 LYS LEU HET ADP A1000 27 HET MG A1002 1 HET BTN A1004 16 HET BCT A1006 4 HET ADP B1001 27 HET MG B1003 1 HET BTN B1005 16 HET BCT B1007 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM BTN BIOTIN HETNAM BCT BICARBONATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 BTN 2(C10 H16 N2 O3 S) FORMUL 6 BCT 2(C H O3 1-) FORMUL 11 HOH *856(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 LYS A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 GLN A 180 PHE A 193 1 14 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 GLU A 296 GLY A 305 1 10 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 VAL A 328 5 5 HELIX 15 15 ASN A 394 LEU A 409 1 16 HELIX 16 16 ASN A 417 ASN A 426 1 10 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 LEU A 444 1 7 HELIX 19 19 ARG B 10 GLY B 25 1 16 HELIX 20 20 ALA B 35 ARG B 37 5 3 HELIX 21 21 LEU B 39 ALA B 45 1 7 HELIX 22 22 PRO B 55 SER B 59 5 5 HELIX 23 23 ASN B 62 GLY B 74 1 13 HELIX 24 24 ASN B 88 SER B 98 1 11 HELIX 25 25 LYS B 106 ASP B 115 1 10 HELIX 26 26 ASP B 115 GLY B 127 1 13 HELIX 27 27 ASP B 141 GLY B 153 1 13 HELIX 28 28 GLY B 174 SER B 194 1 21 HELIX 29 29 THR B 249 GLY B 268 1 20 HELIX 30 30 GLU B 296 GLY B 305 1 10 HELIX 31 31 ASP B 307 ALA B 317 1 11 HELIX 32 32 LYS B 324 VAL B 328 5 5 HELIX 33 33 ASN B 394 LEU B 409 1 16 HELIX 34 34 ASN B 417 ASN B 426 1 10 HELIX 35 35 ASP B 427 GLY B 433 1 7 HELIX 36 36 HIS B 438 LEU B 444 1 7 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N ILE A 5 O LYS A 27 SHEET 4 A 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 A 5 ILE A 101 PHE A 102 1 O ILE A 101 N ILE A 78 SHEET 1 B 3 MET A 169 VAL A 172 0 SHEET 2 B 3 VAL A 156 ALA A 160 -1 N ILE A 158 O ARG A 170 SHEET 3 B 3 VAL A 198 LYS A 202 -1 O TYR A 199 N LYS A 159 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 ARG A 270 GLU A 280 -1 N GLU A 276 O GLU A 288 SHEET 3 C 8 ARG A 208 ASP A 217 -1 N ALA A 216 O GLY A 271 SHEET 4 C 8 ALA A 222 ARG A 234 -1 O ILE A 223 N LEU A 215 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O VAL A 239 N MET A 232 SHEET 6 C 8 HIS A 333 ASN A 340 -1 O GLU A 336 N GLU A 241 SHEET 7 C 8 MET A 384 GLY A 392 -1 O GLY A 386 N ILE A 339 SHEET 8 C 8 VAL A 365 SER A 369 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 E 2 ARG A 356 HIS A 358 0 SHEET 2 E 2 ILE A 410 ASP A 412 -1 O ASP A 412 N ARG A 356 SHEET 1 F 5 GLU B 47 GLY B 52 0 SHEET 2 F 5 LYS B 27 SER B 33 1 N ALA B 30 O GLU B 47 SHEET 3 F 5 LYS B 4 ILE B 7 1 N ILE B 7 O VAL B 29 SHEET 4 F 5 ALA B 77 HIS B 79 1 O HIS B 79 N VAL B 6 SHEET 5 F 5 ILE B 101 PHE B 102 1 O ILE B 101 N ILE B 78 SHEET 1 G 3 MET B 169 VAL B 172 0 SHEET 2 G 3 VAL B 156 ALA B 160 -1 N VAL B 156 O VAL B 172 SHEET 3 G 3 VAL B 198 LYS B 202 -1 O TYR B 199 N LYS B 159 SHEET 1 H 8 GLU B 283 ASN B 290 0 SHEET 2 H 8 GLY B 271 GLU B 280 -1 N GLU B 276 O GLU B 288 SHEET 3 H 8 ARG B 208 ALA B 216 -1 N ALA B 216 O GLY B 271 SHEET 4 H 8 ALA B 222 ARG B 234 -1 O LEU B 225 N GLN B 213 SHEET 5 H 8 GLN B 237 ALA B 243 -1 O GLU B 242 N ASP B 229 SHEET 6 H 8 HIS B 333 ASN B 340 -1 O GLU B 336 N GLU B 241 SHEET 7 H 8 MET B 384 GLY B 392 -1 O GLY B 386 N ILE B 339 SHEET 8 H 8 VAL B 365 SER B 369 -1 N ARG B 366 O ILE B 389 SHEET 1 I 2 GLY B 352 LYS B 353 0 SHEET 2 I 2 THR B 376 VAL B 377 -1 O VAL B 377 N GLY B 352 SHEET 1 J 2 ARG B 356 HIS B 358 0 SHEET 2 J 2 ILE B 410 ASP B 412 -1 O ASP B 412 N ARG B 356 LINK OE1 GLU A 276 MG MG A1002 1555 1555 2.32 LINK OE1 GLU A 288 MG MG A1002 1555 1555 2.13 LINK O HOH A 538 MG MG A1002 1555 1555 1.96 LINK O HOH A 640 MG MG A1002 1555 1555 2.13 LINK O1B ADP A1000 MG MG A1002 1555 1555 2.19 LINK O2A ADP A1000 MG MG A1002 1555 1555 2.11 LINK OE1 GLU B 276 MG MG B1003 1555 1555 2.47 LINK OE2 GLU B 288 MG MG B1003 1555 1555 2.07 LINK O HOH B 753 MG MG B1003 1555 1555 1.97 LINK O HOH B 804 MG MG B1003 1555 1555 2.16 LINK O1B ADP B1001 MG MG B1003 1555 1555 2.26 LINK O2A ADP B1001 MG MG B1003 1555 1555 2.60 CISPEP 1 TYR A 154 PRO A 155 0 -3.14 CISPEP 2 ALA A 243 PRO A 244 0 -9.26 CISPEP 3 TYR B 154 PRO B 155 0 -1.62 CISPEP 4 ALA B 243 PRO B 244 0 -6.82 SITE 1 AC1 22 LYS A 116 ILE A 157 LYS A 159 GLY A 163 SITE 2 AC1 22 GLY A 164 GLY A 165 MET A 169 GLU A 201 SITE 3 AC1 22 LYS A 202 TYR A 203 LEU A 204 HIS A 209 SITE 4 AC1 22 GLN A 233 HIS A 236 GLU A 276 LEU A 278 SITE 5 AC1 22 GLU A 288 ILE A 437 HOH A 538 HOH A 592 SITE 6 AC1 22 HOH A 796 MG A1002 SITE 1 AC2 5 GLU A 276 GLU A 288 HOH A 538 HOH A 640 SITE 2 AC2 5 ADP A1000 SITE 1 AC3 13 TYR A 82 PHE A 84 ARG A 292 VAL A 295 SITE 2 AC3 13 ARG A 338 TYR A 381 ASP A 382 HOH A 483 SITE 3 AC3 13 HOH A 486 HOH A 550 HOH A 613 HOH A 755 SITE 4 AC3 13 BCT A1006 SITE 1 AC4 9 LYS A 238 ASN A 290 ARG A 292 GLN A 294 SITE 2 AC4 9 VAL A 295 GLU A 296 ARG A 338 HOH A 756 SITE 3 AC4 9 BTN A1004 SITE 1 AC5 21 LYS B 116 ILE B 157 LYS B 159 GLY B 165 SITE 2 AC5 21 GLY B 166 MET B 169 GLU B 201 LYS B 202 SITE 3 AC5 21 TYR B 203 LEU B 204 HIS B 209 GLN B 233 SITE 4 AC5 21 GLU B 276 LEU B 278 ILE B 287 GLU B 288 SITE 5 AC5 21 ILE B 437 HOH B 503 HOH B 575 HOH B 810 SITE 6 AC5 21 MG B1003 SITE 1 AC6 5 GLU B 276 GLU B 288 HOH B 753 HOH B 804 SITE 2 AC6 5 ADP B1001 SITE 1 AC7 15 TYR B 82 PHE B 84 GLN B 237 ARG B 292 SITE 2 AC7 15 VAL B 295 ARG B 338 TYR B 381 ASP B 382 SITE 3 AC7 15 HOH B 490 HOH B 521 HOH B 716 HOH B 762 SITE 4 AC7 15 HOH B 851 HOH B 872 BCT B1007 SITE 1 AC8 9 LYS B 238 ASN B 290 ARG B 292 GLN B 294 SITE 2 AC8 9 VAL B 295 GLU B 296 ARG B 338 HOH B 841 SITE 3 AC8 9 BTN B1005 CRYST1 83.317 106.166 121.486 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012002 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008231 0.00000