HEADER TRANSCRIPTION/DNA 12-FEB-09 3G8X TITLE GR DNA BINDING DOMAIN:GILZ 16BP COMPLEX-65 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 440-525; COMPND 5 SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)- COMPND 9 3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: GLUCOCORTICOID RECEPTOR BINDING SITE GILZ BOTTOM COMPND 13 STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)- COMPND 16 3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: GLUCOCORTICOID RECEPTOR BINDING SITE GILZ TOP STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRL, NR3C1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: OLIGONUCLEOTIDE FROM INTEGRATED DNA TECHNOLOGIES; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: OLIGONUCLEOTIDE FROM INTEGRATED DNA TECHNOLOGIES KEYWDS GLUCOCORTICOID, DNA-BINDING, ALLOSTERY, LEVER ARM, TRANSCRIPTION, KEYWDS 2 HORMONE, ALTERNATIVE INITIATION, CHROMATIN REGULATOR, CYTOPLASM, KEYWDS 3 LIPID-BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, KEYWDS 4 RECEPTOR, STEROID-BINDING, TRANSCRIPTION REGULATION, UBL KEYWDS 5 CONJUGATION, ZINC, ZINC-FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.PUFALL,K.R.YAMAMOTO,S.H.MEIJSING REVDAT 4 06-SEP-23 3G8X 1 REMARK SEQADV REVDAT 3 01-NOV-17 3G8X 1 REMARK REVDAT 2 02-JUN-09 3G8X 1 JRNL REVDAT 1 21-APR-09 3G8X 0 JRNL AUTH S.H.MEIJSING,M.A.PUFALL,A.Y.SO,D.L.BATES,L.CHEN,K.R.YAMAMOTO JRNL TITL DNA BINDING SITE SEQUENCE DIRECTS GLUCOCORTICOID RECEPTOR JRNL TITL 2 STRUCTURE AND ACTIVITY. JRNL REF SCIENCE V. 324 407 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19372434 JRNL DOI 10.1126/SCIENCE.1164265 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 19577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3680 - 4.3945 1.00 2181 217 0.1849 0.2407 REMARK 3 2 4.3945 - 3.4890 0.99 2107 219 0.1853 0.2237 REMARK 3 3 3.4890 - 3.0483 0.97 2033 211 0.2253 0.2890 REMARK 3 4 3.0483 - 2.7697 0.92 1946 197 0.2381 0.2471 REMARK 3 5 2.7697 - 2.5712 0.91 1877 213 0.2188 0.3116 REMARK 3 6 2.5712 - 2.4197 0.88 1838 183 0.2458 0.2639 REMARK 3 7 2.4197 - 2.2985 0.84 1736 186 0.2456 0.2686 REMARK 3 8 2.2985 - 2.1985 0.77 1570 157 0.2349 0.2293 REMARK 3 9 2.1985 - 2.1138 0.70 1482 146 0.2754 0.3317 REMARK 3 10 2.1138 - 2.0500 0.47 971 107 0.3432 0.3912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 60.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.040 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : 1.323 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -19.6368 -14.0479 0.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2716 REMARK 3 T33: 0.5415 T12: -0.0111 REMARK 3 T13: 0.0137 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 5.2516 L22: 0.5535 REMARK 3 L33: 2.0481 L12: 0.6358 REMARK 3 L13: 1.8238 L23: 0.6283 REMARK 3 S TENSOR REMARK 3 S11: 0.2567 S12: 0.2381 S13: -1.1676 REMARK 3 S21: -0.0907 S22: -0.0571 S23: -0.3529 REMARK 3 S31: -0.0246 S32: 0.3316 S33: -0.2282 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -35.5103 -19.5730 -21.6838 REMARK 3 T TENSOR REMARK 3 T11: 0.7198 T22: 0.5431 REMARK 3 T33: 0.3459 T12: 0.0094 REMARK 3 T13: -0.1211 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 2.8028 L22: -0.0097 REMARK 3 L33: 0.3849 L12: 0.9884 REMARK 3 L13: 0.4731 L23: 1.5045 REMARK 3 S TENSOR REMARK 3 S11: -0.4071 S12: 0.8870 S13: -0.1443 REMARK 3 S21: -0.6461 S22: -0.0771 S23: 0.4363 REMARK 3 S31: -0.8955 S32: 0.0660 S33: 0.3776 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -14.3378 -13.1651 -18.1041 REMARK 3 T TENSOR REMARK 3 T11: 0.5557 T22: 1.0524 REMARK 3 T33: 0.3703 T12: -0.3093 REMARK 3 T13: -0.0102 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 3.4937 L22: 2.6911 REMARK 3 L33: 3.4085 L12: 1.5350 REMARK 3 L13: 2.6467 L23: 2.9068 REMARK 3 S TENSOR REMARK 3 S11: -0.4381 S12: 0.2641 S13: -0.4397 REMARK 3 S21: -0.6522 S22: 0.9439 S23: -0.2349 REMARK 3 S31: -0.9657 S32: 0.2100 S33: -0.5630 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -16.2331 -16.0535 -21.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.4256 T22: 1.4365 REMARK 3 T33: 0.5170 T12: -0.0248 REMARK 3 T13: 0.0356 T23: -0.2219 REMARK 3 L TENSOR REMARK 3 L11: -1.3625 L22: 3.5485 REMARK 3 L33: 3.9627 L12: 3.8575 REMARK 3 L13: 4.0201 L23: 2.4852 REMARK 3 S TENSOR REMARK 3 S11: -0.5564 S12: 1.0150 S13: -0.6794 REMARK 3 S21: -0.4073 S22: 0.6407 S23: -0.5346 REMARK 3 S31: -0.9443 S32: 0.7893 S33: -0.1898 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115869 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.18300 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : 0.65900 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1GLU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA CACODYLATE, PH 7.0, 2.25MM REMARK 280 SPERMINE, 9MM MGCL2, 1.8 COCL2, 5% PEG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.60650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.95700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.60650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.95700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 436 REMARK 465 SER A 437 REMARK 465 LYS A 514 REMARK 465 LYS A 515 REMARK 465 ILE A 516 REMARK 465 LYS A 517 REMARK 465 GLY A 518 REMARK 465 ILE A 519 REMARK 465 GLN A 520 REMARK 465 GLN A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 465 ALA A 524 REMARK 465 GLY A 525 REMARK 465 GLY B 436 REMARK 465 SER B 437 REMARK 465 HIS B 438 REMARK 465 LYS B 514 REMARK 465 LYS B 515 REMARK 465 ILE B 516 REMARK 465 LYS B 517 REMARK 465 GLY B 518 REMARK 465 ILE B 519 REMARK 465 GLN B 520 REMARK 465 GLN B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 ALA B 524 REMARK 465 GLY B 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 511 CG CD CE NZ REMARK 470 THR B 512 OG1 CG2 REMARK 470 LYS B 513 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 11 O3' DG C 11 C3' -0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 2 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG D 3 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 10 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DA D 10 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG D 12 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT D 13 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT D 14 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA C 1 C2 - N3 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG C 3 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG C 11 C3' - O3' - P ANGL. DEV. = -7.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT C 13 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 481 45.58 -141.03 REMARK 500 ASP A 485 -165.81 -113.31 REMARK 500 ARG A 510 -73.91 -75.44 REMARK 500 ASP B 445 -163.78 -79.41 REMARK 500 GLU B 446 92.86 -55.69 REMARK 500 SER B 448 -73.52 -90.87 REMARK 500 CYS B 450 113.15 -30.98 REMARK 500 GLN B 471 -170.40 -174.79 REMARK 500 HIS B 472 134.24 175.56 REMARK 500 ARG B 479 23.52 -144.08 REMARK 500 ASP B 481 44.83 -147.28 REMARK 500 ASP B 485 -169.92 -121.40 REMARK 500 LEU B 507 20.33 -74.20 REMARK 500 ALA B 509 36.55 -98.41 REMARK 500 LYS B 511 -6.43 -56.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 526 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 107.8 REMARK 620 3 CYS A 457 SG 112.1 103.7 REMARK 620 4 CYS A 460 SG 107.6 114.0 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 527 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 CYS A 482 SG 99.2 REMARK 620 3 CYS A 492 SG 116.1 115.3 REMARK 620 4 CYS A 495 SG 108.8 108.5 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 526 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 440 SG REMARK 620 2 CYS B 443 SG 125.7 REMARK 620 3 CYS B 457 SG 137.4 83.7 REMARK 620 4 CYS B 460 SG 124.4 92.7 77.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 527 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 482 SG 100.7 REMARK 620 3 CYS B 492 SG 113.8 115.0 REMARK 620 4 CYS B 495 SG 107.0 112.4 107.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 527 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FYL RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT DNA REMARK 900 RELATED ID: 3G6P RELATED DB: PDB REMARK 900 SAME COMPLEX, DIFFERENT CRYSTAL CONDITION REMARK 900 RELATED ID: 3G6Q RELATED DB: PDB REMARK 900 SAME DNA BINDING SITE, INSERTION MUTATION GR GAMMA REMARK 900 RELATED ID: 3G6R RELATED DB: PDB REMARK 900 RELATED ID: 3G6U RELATED DB: PDB REMARK 900 RELATED ID: 3G97 RELATED DB: PDB REMARK 900 RELATED ID: 3G99 RELATED DB: PDB REMARK 900 RELATED ID: 3G8U RELATED DB: PDB REMARK 900 RELATED ID: 3G9I RELATED DB: PDB REMARK 900 RELATED ID: 3G9J RELATED DB: PDB REMARK 900 RELATED ID: 3G9M RELATED DB: PDB REMARK 900 RELATED ID: 3G9O RELATED DB: PDB REMARK 900 RELATED ID: 3G9P RELATED DB: PDB DBREF 3G8X A 440 525 UNP P06536 GCR_RAT 440 525 DBREF 3G8X B 440 525 UNP P06536 GCR_RAT 440 525 DBREF 3G8X C 1 16 PDB 3G8X 3G8X 1 16 DBREF 3G8X D 1 16 PDB 3G8X 3G8X 1 16 SEQADV 3G8X GLY A 436 UNP P06536 EXPRESSION TAG SEQADV 3G8X SER A 437 UNP P06536 EXPRESSION TAG SEQADV 3G8X HIS A 438 UNP P06536 EXPRESSION TAG SEQADV 3G8X MET A 439 UNP P06536 EXPRESSION TAG SEQADV 3G8X GLY B 436 UNP P06536 EXPRESSION TAG SEQADV 3G8X SER B 437 UNP P06536 EXPRESSION TAG SEQADV 3G8X HIS B 438 UNP P06536 EXPRESSION TAG SEQADV 3G8X MET B 439 UNP P06536 EXPRESSION TAG SEQRES 1 A 90 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 A 90 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 A 90 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 A 90 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 A 90 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 A 90 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS SEQRES 7 A 90 LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY SEQRES 1 B 90 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 B 90 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 B 90 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 B 90 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 B 90 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 B 90 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR LYS SEQRES 7 B 90 LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY SEQRES 1 D 16 DT DG DG DA DA DC DC DC DA DA DT DG DT SEQRES 2 D 16 DT DC DT SEQRES 1 C 16 DA DA DG DA DA DC DA DT DT DG DG DG DT SEQRES 2 C 16 DT DC DC HET ZN A 526 1 HET ZN A 527 1 HET EDO A 1 4 HET EDO A 528 4 HET ZN B 526 1 HET ZN B 527 1 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ZN 4(ZN 2+) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 11 HOH *67(H2 O) HELIX 1 1 CYS A 457 GLY A 470 1 14 HELIX 2 2 ILE A 487 ASN A 491 5 5 HELIX 3 3 CYS A 492 ALA A 503 1 12 HELIX 4 4 GLU A 508 LYS A 513 1 6 HELIX 5 5 CYS B 457 GLY B 470 1 14 HELIX 6 6 CYS B 492 ALA B 503 1 12 HELIX 7 7 ALA B 509 LYS B 513 5 5 SHEET 1 A 2 CYS A 450 HIS A 451 0 SHEET 2 A 2 VAL A 454 LEU A 455 -1 O VAL A 454 N HIS A 451 SSBOND 1 CYS B 457 CYS B 460 1555 1555 2.99 LINK SG CYS A 440 ZN ZN A 526 1555 1555 2.40 LINK SG CYS A 443 ZN ZN A 526 1555 1555 2.27 LINK SG CYS A 457 ZN ZN A 526 1555 1555 2.24 LINK SG CYS A 460 ZN ZN A 526 1555 1555 2.31 LINK SG CYS A 476 ZN ZN A 527 1555 1555 2.22 LINK SG CYS A 482 ZN ZN A 527 1555 1555 2.25 LINK SG CYS A 492 ZN ZN A 527 1555 1555 2.23 LINK SG CYS A 495 ZN ZN A 527 1555 1555 2.39 LINK SG CYS B 440 ZN ZN B 526 1555 1555 2.39 LINK SG CYS B 443 ZN ZN B 526 1555 1555 2.52 LINK SG CYS B 457 ZN ZN B 526 1555 1555 2.45 LINK SG CYS B 460 ZN ZN B 526 1555 1555 2.33 LINK SG CYS B 476 ZN ZN B 527 1555 1555 2.22 LINK SG CYS B 482 ZN ZN B 527 1555 1555 2.30 LINK SG CYS B 492 ZN ZN B 527 1555 1555 2.36 LINK SG CYS B 495 ZN ZN B 527 1555 1555 2.38 SITE 1 AC1 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC2 5 CYS A 476 CYS A 482 CYS A 492 CYS A 495 SITE 2 AC2 5 EDO A 528 SITE 1 AC3 7 HOH A 52 ALA A 477 GLY A 478 HOH B 4 SITE 2 AC3 7 ASP B 481 CYS B 482 ILE B 483 SITE 1 AC4 8 CYS A 476 ALA A 477 CYS A 482 CYS A 492 SITE 2 AC4 8 ZN A 527 HOH B 13 CYS B 482 ASN B 491 SITE 1 AC5 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC6 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 CRYST1 117.213 37.914 96.993 90.00 123.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008531 0.000000 0.005587 0.00000 SCALE2 0.000000 0.026375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012324 0.00000