HEADER HYDROLASE 12-FEB-09 3G8Y TITLE CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE (BVU_4111) FROM BACTEROIDES TITLE 2 VULGATUS ATCC 8482 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD/RAGB-ASSOCIATED ESTERASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-414; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: DSM 1447 / NCTC 11154; SOURCE 5 ATCC: 8482; SOURCE 6 GENE: YP_001301335.1, BVU_4111; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS SUSD/RAGB-ASSOCIATED ESTERASE-LIKE PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3G8Y 1 REMARK SEQADV REVDAT 4 24-JUL-19 3G8Y 1 REMARK LINK REVDAT 3 25-OCT-17 3G8Y 1 REMARK REVDAT 2 28-JUL-10 3G8Y 1 HEADER TITLE KEYWDS REVDAT 1 24-FEB-09 3G8Y 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD/RAGB-ASSOCIATED ESTERASE-LIKE JRNL TITL 2 PROTEIN (YP_001301335.1) FROM BACTEROIDES VULGATUS ATCC 8482 JRNL TITL 3 AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.810 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3330 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2296 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4511 ; 1.544 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5583 ; 1.025 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 4.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;30.751 ;23.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;11.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ; 9.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3711 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 685 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 711 ; 0.210 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2376 ; 0.178 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1644 ; 0.187 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1531 ; 0.088 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 581 ; 0.197 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.205 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.152 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.260 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.188 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2173 ; 1.861 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 804 ; 0.453 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3273 ; 2.602 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1481 ; 4.002 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1238 ; 4.814 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. PEG MOLECULES FROM CRYSTALLIZATION AND REMARK 3 ETHYLENE GLYCOL FROM CRYOPROTECTION ARE MODELED IN THIS REMARK 3 STRUCTURE. 4. UNKNOWN ELECTRON DENSITY IS OBSERVED AND UNMODELED REMARK 3 NEAR SER 256 AND HIS 398. REMARK 4 REMARK 4 3G8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97982, 0.97966 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44914 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.399 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : 0.14300 REMARK 200 FOR THE DATA SET : 4.8240 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : 0.77800 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% PEG 6000, 0.1M BICINE REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.79533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 215.59067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.69300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 269.48833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.89767 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.79533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 215.59067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 269.48833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 161.69300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.89767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE RESULTS FROM SIZE EXCLUSION CHROMATOGRAPHY SUPPORT THE REMARK 300 ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -37.95150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 65.73393 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.89767 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 69 CD OE1 NE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ASP A 161 OD1 OD2 REMARK 470 LYS A 270 CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ARG A 315 CZ NH1 NH2 REMARK 470 LYS A 373 NZ REMARK 470 ARG A 410 NH1 NH2 REMARK 470 LYS A 414 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 93 123.28 -36.02 REMARK 500 LYS A 134 -99.67 -93.11 REMARK 500 ALA A 192 -4.03 83.82 REMARK 500 ASP A 198 -93.57 -113.61 REMARK 500 ASP A 203 -70.34 -162.79 REMARK 500 TRP A 222 -157.95 -108.38 REMARK 500 SER A 256 -126.83 56.29 REMARK 500 GLU A 335 42.93 -141.32 REMARK 500 ASN A 392 42.26 70.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 13 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393239 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE CLONED CONSTRUCT CONTAINS RESIDUES 25-414 OF THE FULL REMARK 999 LENGTH PROTEIN. DBREF 3G8Y A 25 414 UNP A6L7P9 A6L7P9_BACV8 25 414 SEQADV 3G8Y GLY A 0 UNP A6L7P9 EXPRESSION TAG SEQRES 1 A 391 GLY TYR GLN PRO GLU LYS HIS ALA VAL VAL LYS SER ASP SEQRES 2 A 391 ARG GLY ASP GLY ARG LEU LEU SER THR TYR ALA ILE VAL SEQRES 3 A 391 HIS GLU MSE LEU LYS ASP THR HIS PRO GLN TYR ALA TYR SEQRES 4 A 391 ARG SER GLY MSE SER ALA GLN GLU PHE THR GLN TRP GLN SEQRES 5 A 391 ASP GLY VAL ARG ALA ALA MSE VAL GLU ILE MSE LYS PHE SEQRES 6 A 391 PRO GLU ILE LYS ARG GLN PRO SER PRO VAL CYS VAL LYS SEQRES 7 A 391 THR GLU LYS LYS GLU GLY TYR ILE LEU GLU LYS TRP GLU SEQRES 8 A 391 PHE TYR PRO PHE PRO LYS SER VAL SER THR PHE LEU VAL SEQRES 9 A 391 LEU LYS PRO GLU HIS LEU LYS GLY ALA VAL PRO GLY VAL SEQRES 10 A 391 LEU CYS ILE PRO GLY SER GLY ARG THR LYS GLU GLY LEU SEQRES 11 A 391 VAL GLY GLU PRO GLY ILE CYS ASP LYS LEU THR GLU ASP SEQRES 12 A 391 TYR ASN ASN PRO LYS VAL SER MSE ALA LEU ASN MSE VAL SEQRES 13 A 391 LYS GLU GLY TYR VAL ALA VAL ALA VAL ASP ASN ALA ALA SEQRES 14 A 391 ALA GLY GLU ALA SER ASP LEU GLU CYS TYR ASP LYS GLY SEQRES 15 A 391 TRP ASN TYR ASP TYR ASP VAL VAL SER ARG PHE LEU LEU SEQRES 16 A 391 GLU LEU GLY TRP SER TRP LEU GLY TYR THR SER TYR LEU SEQRES 17 A 391 ASP MSE GLN VAL LEU ASN TRP MSE LYS ALA GLN SER TYR SEQRES 18 A 391 ILE ARG LYS ASP ARG ILE VAL ILE SER GLY PHE SER LEU SEQRES 19 A 391 GLY THR GLU PRO MSE MSE VAL LEU GLY VAL LEU ASP LYS SEQRES 20 A 391 ASP ILE TYR ALA PHE VAL TYR ASN ASP PHE LEU CYS GLN SEQRES 21 A 391 THR GLN GLU ARG ALA VAL VAL MSE THR LYS PRO ASP LYS SEQRES 22 A 391 GLU ASN ARG ARG PRO PHE PRO ASN SER ILE ARG HIS LEU SEQRES 23 A 391 ILE PRO GLY TYR TRP ARG TYR PHE ASN PHE PRO ASP VAL SEQRES 24 A 391 VAL ALA SER LEU ALA PRO ARG PRO ILE ILE PHE THR GLU SEQRES 25 A 391 GLY GLY LEU ASP ARG ASP PHE ARG LEU VAL GLN SER ALA SEQRES 26 A 391 TYR ALA ALA SER GLY LYS PRO GLU ASN ALA GLU PHE HIS SEQRES 27 A 391 HIS TYR PRO LYS PHE ALA ASP LYS ALA VAL ARG LYS ASP SEQRES 28 A 391 VAL GLU HIS LEU ASP GLU GLY LEU ASP SER LYS THR TYR SEQRES 29 A 391 PHE GLU ALA VAL ASN VAL ASP PRO PRO SER HIS TYR PHE SEQRES 30 A 391 LYS ASN GLU LEU VAL ILE PRO TRP LEU ARG LYS VAL LEU SEQRES 31 A 391 LYS MODRES 3G8Y MSE A 52 MET SELENOMETHIONINE MODRES 3G8Y MSE A 66 MET SELENOMETHIONINE MODRES 3G8Y MSE A 82 MET SELENOMETHIONINE MODRES 3G8Y MSE A 86 MET SELENOMETHIONINE MODRES 3G8Y MSE A 174 MET SELENOMETHIONINE MODRES 3G8Y MSE A 178 MET SELENOMETHIONINE MODRES 3G8Y MSE A 233 MET SELENOMETHIONINE MODRES 3G8Y MSE A 239 MET SELENOMETHIONINE MODRES 3G8Y MSE A 262 MET SELENOMETHIONINE MODRES 3G8Y MSE A 263 MET SELENOMETHIONINE MODRES 3G8Y MSE A 291 MET SELENOMETHIONINE HET MSE A 52 8 HET MSE A 66 8 HET MSE A 82 8 HET MSE A 86 8 HET MSE A 174 8 HET MSE A 178 16 HET MSE A 233 8 HET MSE A 239 8 HET MSE A 262 16 HET MSE A 263 8 HET MSE A 291 16 HET EDO A 1 4 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 12 4 HET PEG A 13 7 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 EDO 12(C2 H6 O2) FORMUL 14 PEG C4 H10 O3 FORMUL 15 HOH *471(H2 O) HELIX 1 1 GLN A 26 ALA A 31 5 6 HELIX 2 2 SER A 44 ASP A 55 1 12 HELIX 3 3 SER A 67 LYS A 87 1 21 HELIX 4 4 THR A 149 VAL A 154 1 6 HELIX 5 5 CYS A 160 THR A 164 5 5 HELIX 6 6 SER A 173 LYS A 180 1 8 HELIX 7 7 ALA A 193 SER A 197 5 5 HELIX 8 8 LEU A 199 ASP A 203 5 5 HELIX 9 9 ASP A 209 LEU A 220 1 12 HELIX 10 10 SER A 223 ALA A 241 1 19 HELIX 11 11 GLY A 258 ASP A 269 1 12 HELIX 12 12 GLN A 283 MSE A 291 1 9 HELIX 13 13 SER A 305 LEU A 309 5 5 HELIX 14 14 GLY A 312 TYR A 316 5 5 HELIX 15 15 ASN A 318 SER A 325 1 8 HELIX 16 16 LEU A 338 SER A 352 1 15 HELIX 17 17 LYS A 354 GLU A 356 5 3 HELIX 18 18 TYR A 363 ALA A 367 5 5 HELIX 19 19 ASP A 368 ARG A 372 5 5 HELIX 20 20 ASP A 383 VAL A 391 1 9 HELIX 21 21 ASP A 394 HIS A 398 5 5 HELIX 22 22 LYS A 401 LEU A 413 1 13 SHEET 1 A 9 VAL A 98 LYS A 105 0 SHEET 2 A 9 TYR A 108 PHE A 115 -1 O TYR A 108 N LYS A 105 SHEET 3 A 9 SER A 123 PRO A 130 -1 O VAL A 127 N GLU A 111 SHEET 4 A 9 VAL A 184 ALA A 187 -1 O ALA A 185 N LEU A 128 SHEET 5 A 9 VAL A 137 ILE A 143 1 N CYS A 142 O VAL A 186 SHEET 6 A 9 ILE A 245 PHE A 255 1 O ARG A 246 N VAL A 137 SHEET 7 A 9 ALA A 274 ASN A 278 1 O VAL A 276 N GLY A 254 SHEET 8 A 9 ILE A 331 PHE A 333 1 O ILE A 332 N TYR A 277 SHEET 9 A 9 ALA A 358 PHE A 360 1 O GLU A 359 N ILE A 331 LINK C GLU A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N LEU A 53 1555 1555 1.34 LINK C GLY A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N SER A 67 1555 1555 1.33 LINK C ALA A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N VAL A 83 1555 1555 1.33 LINK C ILE A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N LYS A 87 1555 1555 1.33 LINK C SER A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N ALA A 175 1555 1555 1.33 LINK C ASN A 177 N AMSE A 178 1555 1555 1.33 LINK C ASN A 177 N BMSE A 178 1555 1555 1.33 LINK C AMSE A 178 N VAL A 179 1555 1555 1.33 LINK C BMSE A 178 N VAL A 179 1555 1555 1.33 LINK C ASP A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N AGLN A 234 1555 1555 1.33 LINK C MSE A 233 N BGLN A 234 1555 1555 1.34 LINK C TRP A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N LYS A 240 1555 1555 1.33 LINK C PRO A 261 N AMSE A 262 1555 1555 1.33 LINK C PRO A 261 N BMSE A 262 1555 1555 1.34 LINK C AMSE A 262 N MSE A 263 1555 1555 1.33 LINK C BMSE A 262 N MSE A 263 1555 1555 1.34 LINK C MSE A 263 N VAL A 264 1555 1555 1.33 LINK C VAL A 290 N AMSE A 291 1555 1555 1.33 LINK C VAL A 290 N BMSE A 291 1555 1555 1.34 LINK C AMSE A 291 N THR A 292 1555 1555 1.34 LINK C BMSE A 291 N THR A 292 1555 1555 1.33 CISPEP 1 ALA A 327 PRO A 328 0 1.77 SITE 1 AC1 5 ARG A 343 ASP A 374 GLU A 376 LYS A 411 SITE 2 AC1 5 HOH A 803 SITE 1 AC2 4 ASP A 279 PHE A 280 PHE A 388 HIS A 398 SITE 1 AC3 6 MSE A 52 ASP A 55 PHE A 118 PRO A 119 SITE 2 AC3 6 HOH A 449 HOH A 656 SITE 1 AC4 5 GLY A 145 SER A 146 ARG A 148 PHE A 255 SITE 2 AC4 5 HOH A 788 SITE 1 AC5 7 ASP A 211 VAL A 212 ARG A 215 ILE A 306 SITE 2 AC5 7 HOH A 517 HOH A 523 HOH A 567 SITE 1 AC6 6 TYR A 60 GLY A 77 GLU A 84 TYR A 316 SITE 2 AC6 6 HOH A 851 HOH A 871 SITE 1 AC7 3 LYS A 87 LEU A 220 GLY A 221 SITE 1 AC8 7 PHE A 366 VAL A 371 LYS A 373 GLU A 389 SITE 2 AC8 7 HOH A 486 HOH A 630 HOH A 689 SITE 1 AC9 8 HOH A 21 THR A 284 HIS A 308 ILE A 310 SITE 2 AC9 8 TYR A 313 TRP A 314 HOH A 562 HOH A 591 SITE 1 BC1 6 TYR A 62 SER A 64 ARG A 343 LEU A 344 SITE 2 BC1 6 HOH A 554 HOH A 650 SITE 1 BC2 4 GLN A 26 GLY A 194 GLU A 195 HOH A 820 SITE 1 BC3 6 LYS A 369 ARG A 372 GLU A 403 PRO A 407 SITE 2 BC3 6 HOH A 599 HOH A 612 SITE 1 BC4 4 SER A 146 GLY A 147 ARG A 148 HOH A 657 CRYST1 75.903 75.903 323.386 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013175 0.007606 0.000000 0.00000 SCALE2 0.000000 0.015213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003092 0.00000