data_3G9J # _entry.id 3G9J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3G9J pdb_00003g9j 10.2210/pdb3g9j/pdb NDB PD1242 ? ? RCSB RCSB051593 ? ? WWPDB D_1000051593 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FYL 'Same protein, different DNA' unspecified PDB 3G6P 'Same complex, different crystal condition' unspecified PDB 3G6Q 'Same DNA binding site, insertion mutation GR gamma' unspecified PDB 3G6R . unspecified PDB 3G6T . unspecified PDB 3G6U . unspecified PDB 3G8U . unspecified PDB 3G8X . unspecified PDB 3G97 . unspecified PDB 3G99 . unspecified PDB 3G9I . unspecified PDB 3G9M . unspecified PDB 3G9O . unspecified PDB 3G9P . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3G9J _pdbx_database_status.recvd_initial_deposition_date 2009-02-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pufall, M.A.' 1 'Yamamoto, K.R.' 2 'Meijsing, S.H.' 3 # _citation.id primary _citation.title 'DNA binding site sequence directs glucocorticoid receptor structure and activity.' _citation.journal_abbrev Science _citation.journal_volume 324 _citation.page_first 407 _citation.page_last 410 _citation.year 2009 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19372434 _citation.pdbx_database_id_DOI 10.1126/science.1164265 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Meijsing, S.H.' 1 ? primary 'Pufall, M.A.' 2 ? primary 'So, A.Y.' 3 ? primary 'Bates, D.L.' 4 ? primary 'Chen, L.' 5 ? primary 'Yamamoto, K.R.' 6 ? # _cell.entry_id 3G9J _cell.length_a 39.069 _cell.length_b 102.096 _cell.length_c 112.076 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3G9J _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*TP*G)-3') ; 5508.606 1 ? ? ? 'GR binding site: Pal 18bp top strand' 2 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*TP*G)-3') ; 5481.564 1 ? ? ? 'GR binding site: Pal 18bp bottom strand' 3 polymer man 'Glucocorticoid receptor' 9962.758 2 ? ? 'UNP residues 440-525' ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 6 water nat water 18.015 128 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'GR, Nuclear receptor subfamily 3 group C member 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DG)(DA)(DA)(DC)(DA)(DA)(DA)(DA)(DT)(DG)(DT)(DT)(DC)(DT)(DG)' CCAGAACAAAATGTTCTG C ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DG)(DA)(DA)(DC)(DA)(DT)(DT)(DT)(DT)(DG)(DT)(DT)(DC)(DT)(DG)' CCAGAACATTTTGTTCTG D ? 3 'polypeptide(L)' no no ;GSHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKK IKGIQQATAG ; ;GSHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKK IKGIQQATAG ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DC n 1 8 DA n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DT n 1 13 DG n 1 14 DT n 1 15 DT n 1 16 DC n 1 17 DT n 1 18 DG n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DG n 2 14 DT n 2 15 DT n 2 16 DC n 2 17 DT n 2 18 DG n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 CYS n 3 6 LEU n 3 7 VAL n 3 8 CYS n 3 9 SER n 3 10 ASP n 3 11 GLU n 3 12 ALA n 3 13 SER n 3 14 GLY n 3 15 CYS n 3 16 HIS n 3 17 TYR n 3 18 GLY n 3 19 VAL n 3 20 LEU n 3 21 THR n 3 22 CYS n 3 23 GLY n 3 24 SER n 3 25 CYS n 3 26 LYS n 3 27 VAL n 3 28 PHE n 3 29 PHE n 3 30 LYS n 3 31 ARG n 3 32 ALA n 3 33 VAL n 3 34 GLU n 3 35 GLY n 3 36 GLN n 3 37 HIS n 3 38 ASN n 3 39 TYR n 3 40 LEU n 3 41 CYS n 3 42 ALA n 3 43 GLY n 3 44 ARG n 3 45 ASN n 3 46 ASP n 3 47 CYS n 3 48 ILE n 3 49 ILE n 3 50 ASP n 3 51 LYS n 3 52 ILE n 3 53 ARG n 3 54 ARG n 3 55 LYS n 3 56 ASN n 3 57 CYS n 3 58 PRO n 3 59 ALA n 3 60 CYS n 3 61 ARG n 3 62 TYR n 3 63 ARG n 3 64 LYS n 3 65 CYS n 3 66 LEU n 3 67 GLN n 3 68 ALA n 3 69 GLY n 3 70 MET n 3 71 ASN n 3 72 LEU n 3 73 GLU n 3 74 ALA n 3 75 ARG n 3 76 LYS n 3 77 THR n 3 78 LYS n 3 79 LYS n 3 80 LYS n 3 81 ILE n 3 82 LYS n 3 83 GLY n 3 84 ILE n 3 85 GLN n 3 86 GLN n 3 87 ALA n 3 88 THR n 3 89 ALA n 3 90 GLY n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'brown rat,rat,rats' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Nr3c1, Grl' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) Gold' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GCR_RAT P06536 3 ;CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGI QQATAG ; 440 ? 2 PDB 3G9J 3G9J 1 CCAGAACAAAATGTTCTG ? ? 3 PDB 3G9J 3G9J 2 CCAGAACATTTTGTTCTG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3G9J A 5 ? 90 ? P06536 440 ? 525 ? 440 525 2 1 3G9J B 5 ? 90 ? P06536 440 ? 525 ? 440 525 3 2 3G9J C 1 ? 18 ? 3G9J 1 ? 18 ? 1 18 4 3 3G9J D 1 ? 18 ? 3G9J 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3G9J GLY A 1 ? UNP P06536 ? ? 'expression tag' 436 1 1 3G9J SER A 2 ? UNP P06536 ? ? 'expression tag' 437 2 1 3G9J HIS A 3 ? UNP P06536 ? ? 'expression tag' 438 3 1 3G9J MET A 4 ? UNP P06536 ? ? 'expression tag' 439 4 2 3G9J GLY B 1 ? UNP P06536 ? ? 'expression tag' 436 5 2 3G9J SER B 2 ? UNP P06536 ? ? 'expression tag' 437 6 2 3G9J HIS B 3 ? UNP P06536 ? ? 'expression tag' 438 7 2 3G9J MET B 4 ? UNP P06536 ? ? 'expression tag' 439 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3G9J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.62 _exptl_crystal.density_percent_sol 65.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '50mM HEPES, pH 7.0, 100mM KCl, 10mM CaCl2, 10% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 HEPES ? ? ? 1 2 1 KCl ? ? ? 1 3 1 CaCl2 ? ? ? 1 4 2 HEPES ? ? ? 1 5 2 KCl ? ? ? 1 6 2 CaCl2 ? ? ? 1 7 2 PEG400 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM Q315r' _diffrn_detector.pdbx_collection_date 2008-04-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double flat crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.115878 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.115878 # _reflns.entry_id 3G9J _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.32 _reflns.number_obs 20142 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 23.1 _reflns.B_iso_Wilson_estimate 43.971 _reflns.pdbx_redundancy 9.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.32 _reflns_shell.d_res_low 2.4 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.615 _reflns_shell.pdbx_Rsym_value 0.468 _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 9.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1959 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3G9J _refine.ls_number_reflns_obs 19067 _refine.ls_number_reflns_all 20142 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.21 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.125 _refine.ls_d_res_high 2.32 _refine.ls_percent_reflns_obs 94.79 _refine.ls_R_factor_obs 0.1884 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1844 _refine.ls_R_factor_R_free 0.2255 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.94 _refine.ls_number_reflns_R_free 1896 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 58.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.333 _refine.solvent_model_param_bsol 50.516 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1GLU _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'PHENIX - Automatic' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 1.95 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1175 _refine_hist.pdbx_number_atoms_nucleic_acid 729 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 2052 _refine_hist.d_res_high 2.32 _refine_hist.d_res_low 49.125 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_angle_d 1.225 ? ? ? 'X-RAY DIFFRACTION' ? f_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.32 2.4047 1548 0.1999 88.00 0.2694 . . 171 . . 1548 . 'X-RAY DIFFRACTION' . 2.4047 2.5010 1579 0.1897 89.00 0.2474 . . 174 . . 1579 . 'X-RAY DIFFRACTION' . 2.5010 2.6148 1620 0.1934 91.00 0.2480 . . 189 . . 1620 . 'X-RAY DIFFRACTION' . 2.6148 2.7527 1676 0.1993 94.00 0.2682 . . 181 . . 1676 . 'X-RAY DIFFRACTION' . 2.7527 2.9251 1688 0.2015 95.00 0.2821 . . 180 . . 1688 . 'X-RAY DIFFRACTION' . 2.9251 3.1509 1729 0.2231 96.00 0.3037 . . 193 . . 1729 . 'X-RAY DIFFRACTION' . 3.1509 3.4680 1758 0.2059 97.00 0.2404 . . 193 . . 1758 . 'X-RAY DIFFRACTION' . 3.4680 3.9696 1803 0.1673 99.00 0.2280 . . 197 . . 1803 . 'X-RAY DIFFRACTION' . 3.9696 5.0005 1837 0.1366 99.00 0.1661 . . 204 . . 1837 . 'X-RAY DIFFRACTION' . 5.0005 49.1357 1933 0.1689 99.00 0.1850 . . 214 . . 1933 . 'X-RAY DIFFRACTION' # _struct.entry_id 3G9J _struct.title 'GR DNA binding domain:Pal, 18bp complex-36' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3G9J _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;glucocorticoid, DNA-binding, allostery, lever arm, transcription, hormone, Alternative initiation, Chromatin regulator, Cytoplasm, Lipid-binding, Metal-binding, Nucleus, Phosphoprotein, Polymorphism, Receptor, Steroid-binding, Transcription regulation, Ubl conjugation, Zinc, Zinc-finger, TRANSCRIPTION-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 4 ? L N N 4 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 22 ? GLN C 36 ? CYS A 457 GLN A 471 1 ? 15 HELX_P HELX_P2 2 ILE C 52 ? ASN C 56 ? ILE A 487 ASN A 491 5 ? 5 HELX_P HELX_P3 3 CYS C 57 ? ALA C 68 ? CYS A 492 ALA A 503 1 ? 12 HELX_P HELX_P4 4 CYS D 22 ? GLY D 35 ? CYS B 457 GLY B 470 1 ? 14 HELX_P HELX_P5 5 ILE D 52 ? ASN D 56 ? ILE B 487 ASN B 491 5 ? 5 HELX_P HELX_P6 6 CYS D 57 ? ALA D 68 ? CYS B 492 ALA B 503 1 ? 12 HELX_P HELX_P7 7 GLU D 73 ? LYS D 79 ? GLU B 508 LYS B 514 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CYS 5 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 440 A ZN 1514 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc2 metalc ? ? C CYS 8 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 443 A ZN 1514 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc3 metalc ? ? C CYS 22 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 457 A ZN 1514 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc4 metalc ? ? C CYS 25 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 460 A ZN 1514 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc5 metalc ? ? C CYS 41 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 476 A ZN 1515 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc6 metalc ? ? C CYS 47 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 482 A ZN 1515 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc7 metalc ? ? C CYS 57 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 492 A ZN 1515 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc8 metalc ? ? C CYS 60 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 495 A ZN 1515 1_555 ? ? ? ? ? ? ? 2.441 ? ? metalc9 metalc ? ? D CYS 5 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 440 B ZN 1512 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc10 metalc ? ? D CYS 8 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 443 B ZN 1512 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc11 metalc ? ? D CYS 22 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 457 B ZN 1512 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc12 metalc ? ? D CYS 25 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 460 B ZN 1512 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc13 metalc ? ? D CYS 41 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 476 B ZN 1513 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc14 metalc ? ? D CYS 47 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 482 B ZN 1513 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc15 metalc ? ? D CYS 57 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 492 B ZN 1513 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc16 metalc ? ? D CYS 60 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 495 B ZN 1513 1_555 ? ? ? ? ? ? ? 2.393 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 18 N1 ? ? C DC 2 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 18 O6 ? ? C DC 2 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 18 N2 ? ? C DC 2 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 17 N3 ? ? C DA 3 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 17 O4 ? ? C DA 3 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 16 N3 ? ? C DG 4 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 16 O2 ? ? C DG 4 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 16 N4 ? ? C DG 4 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 5 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 5 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 14 N3 ? ? C DA 6 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 14 O4 ? ? C DA 6 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 13 N1 ? ? C DC 7 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 13 O6 ? ? C DC 7 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 13 N2 ? ? C DC 7 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 12 N3 ? ? C DA 8 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 12 O4 ? ? C DA 8 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 9 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 9 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 10 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 10 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 11 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 11 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 12 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 12 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 7 N3 ? ? C DG 13 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 7 O2 ? ? C DG 13 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 7 N4 ? ? C DG 13 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 6 N1 ? ? C DT 14 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 6 N6 ? ? C DT 14 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 15 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 15 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 4 N1 ? ? C DC 16 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 4 O6 ? ? C DC 16 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 4 N2 ? ? C DC 16 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 3 N1 ? ? C DT 17 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 3 N6 ? ? C DT 17 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 2 N3 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 2 O2 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 2 N4 ? ? C DG 18 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY C 14 ? HIS C 16 ? GLY A 449 HIS A 451 A 2 VAL C 19 ? THR C 21 ? VAL A 454 THR A 456 B 1 GLY D 14 ? HIS D 16 ? GLY B 449 HIS B 451 B 2 VAL D 19 ? THR D 21 ? VAL B 454 THR B 456 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS C 16 ? N HIS A 451 O VAL C 19 ? O VAL A 454 B 1 2 N HIS D 16 ? N HIS B 451 O VAL D 19 ? O VAL B 454 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C EDO 19 ? 2 'BINDING SITE FOR RESIDUE EDO C 19' AC2 Software A ZN 1514 ? 4 'BINDING SITE FOR RESIDUE ZN A 1514' AC3 Software A ZN 1515 ? 4 'BINDING SITE FOR RESIDUE ZN A 1515' AC4 Software A EDO 1 ? 5 'BINDING SITE FOR RESIDUE EDO A 1' AC5 Software B ZN 1512 ? 4 'BINDING SITE FOR RESIDUE ZN B 1512' AC6 Software B ZN 1513 ? 4 'BINDING SITE FOR RESIDUE ZN B 1513' AC7 Software B EDO 1 ? 5 'BINDING SITE FOR RESIDUE EDO B 1' AC8 Software B EDO 526 ? 8 'BINDING SITE FOR RESIDUE EDO B 526' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DC A 16 ? DC C 16 . ? 1_555 ? 2 AC1 2 DT A 17 ? DT C 17 . ? 1_555 ? 3 AC2 4 CYS C 5 ? CYS A 440 . ? 1_555 ? 4 AC2 4 CYS C 8 ? CYS A 443 . ? 1_555 ? 5 AC2 4 CYS C 22 ? CYS A 457 . ? 1_555 ? 6 AC2 4 CYS C 25 ? CYS A 460 . ? 1_555 ? 7 AC3 4 CYS C 41 ? CYS A 476 . ? 1_555 ? 8 AC3 4 CYS C 47 ? CYS A 482 . ? 1_555 ? 9 AC3 4 CYS C 57 ? CYS A 492 . ? 1_555 ? 10 AC3 4 CYS C 60 ? CYS A 495 . ? 1_555 ? 11 AC4 5 LEU C 40 ? LEU A 475 . ? 1_555 ? 12 AC4 5 PRO C 58 ? PRO A 493 . ? 1_555 ? 13 AC4 5 ALA C 59 ? ALA A 494 . ? 1_555 ? 14 AC4 5 ILE D 52 ? ILE B 487 . ? 1_555 ? 15 AC4 5 ASN D 56 ? ASN B 491 . ? 1_555 ? 16 AC5 4 CYS D 5 ? CYS B 440 . ? 1_555 ? 17 AC5 4 CYS D 8 ? CYS B 443 . ? 1_555 ? 18 AC5 4 CYS D 22 ? CYS B 457 . ? 1_555 ? 19 AC5 4 CYS D 25 ? CYS B 460 . ? 1_555 ? 20 AC6 4 CYS D 41 ? CYS B 476 . ? 1_555 ? 21 AC6 4 CYS D 47 ? CYS B 482 . ? 1_555 ? 22 AC6 4 CYS D 57 ? CYS B 492 . ? 1_555 ? 23 AC6 4 CYS D 60 ? CYS B 495 . ? 1_555 ? 24 AC7 5 HOH P . ? HOH B 52 . ? 1_555 ? 25 AC7 5 GLN D 36 ? GLN B 471 . ? 4_455 ? 26 AC7 5 HIS D 37 ? HIS B 472 . ? 4_455 ? 27 AC7 5 ASN D 38 ? ASN B 473 . ? 4_455 ? 28 AC7 5 ASP D 46 ? ASP B 481 . ? 1_555 ? 29 AC8 8 SER D 24 ? SER B 459 . ? 1_555 ? 30 AC8 8 VAL D 27 ? VAL B 462 . ? 1_555 ? 31 AC8 8 PHE D 28 ? PHE B 463 . ? 1_555 ? 32 AC8 8 ARG D 31 ? ARG B 466 . ? 1_555 ? 33 AC8 8 ARG D 61 ? ARG B 496 . ? 1_555 ? 34 AC8 8 DT A 12 ? DT C 12 . ? 1_555 ? 35 AC8 8 DG A 13 ? DG C 13 . ? 1_555 ? 36 AC8 8 HOH M . ? HOH C 51 . ? 1_555 ? # _database_PDB_matrix.entry_id 3G9J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3G9J _atom_sites.fract_transf_matrix[1][1] 0.025596 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009795 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008923 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC C . n A 1 2 DC 2 2 2 DC DC C . n A 1 3 DA 3 3 3 DA DA C . n A 1 4 DG 4 4 4 DG DG C . n A 1 5 DA 5 5 5 DA DA C . n A 1 6 DA 6 6 6 DA DA C . n A 1 7 DC 7 7 7 DC DC C . n A 1 8 DA 8 8 8 DA DA C . n A 1 9 DA 9 9 9 DA DA C . n A 1 10 DA 10 10 10 DA DA C . n A 1 11 DA 11 11 11 DA DA C . n A 1 12 DT 12 12 12 DT DT C . n A 1 13 DG 13 13 13 DG DG C . n A 1 14 DT 14 14 14 DT DT C . n A 1 15 DT 15 15 15 DT DT C . n A 1 16 DC 16 16 16 DC DC C . n A 1 17 DT 17 17 17 DT DT C . n A 1 18 DG 18 18 18 DG DG C . n B 2 1 DC 1 1 1 DC DC D . n B 2 2 DC 2 2 2 DC DC D . n B 2 3 DA 3 3 3 DA DA D . n B 2 4 DG 4 4 4 DG DG D . n B 2 5 DA 5 5 5 DA DA D . n B 2 6 DA 6 6 6 DA DA D . n B 2 7 DC 7 7 7 DC DC D . n B 2 8 DA 8 8 8 DA DA D . n B 2 9 DT 9 9 9 DT DT D . n B 2 10 DT 10 10 10 DT DT D . n B 2 11 DT 11 11 11 DT DT D . n B 2 12 DT 12 12 12 DT DT D . n B 2 13 DG 13 13 13 DG DG D . n B 2 14 DT 14 14 14 DT DT D . n B 2 15 DT 15 15 15 DT DT D . n B 2 16 DC 16 16 16 DC DC D . n B 2 17 DT 17 17 17 DT DT D . n B 2 18 DG 18 18 18 DG DG D . n C 3 1 GLY 1 436 ? ? ? A . n C 3 2 SER 2 437 437 SER ALA A . n C 3 3 HIS 3 438 438 HIS HIS A . n C 3 4 MET 4 439 439 MET MET A . n C 3 5 CYS 5 440 440 CYS CYS A . n C 3 6 LEU 6 441 441 LEU LEU A . n C 3 7 VAL 7 442 442 VAL VAL A . n C 3 8 CYS 8 443 443 CYS CYS A . n C 3 9 SER 9 444 444 SER SER A . n C 3 10 ASP 10 445 445 ASP ASP A . n C 3 11 GLU 11 446 446 GLU GLU A . n C 3 12 ALA 12 447 447 ALA ALA A . n C 3 13 SER 13 448 448 SER SER A . n C 3 14 GLY 14 449 449 GLY GLY A . n C 3 15 CYS 15 450 450 CYS CYS A . n C 3 16 HIS 16 451 451 HIS HIS A . n C 3 17 TYR 17 452 452 TYR TYR A . n C 3 18 GLY 18 453 453 GLY GLY A . n C 3 19 VAL 19 454 454 VAL VAL A . n C 3 20 LEU 20 455 455 LEU LEU A . n C 3 21 THR 21 456 456 THR THR A . n C 3 22 CYS 22 457 457 CYS CYS A . n C 3 23 GLY 23 458 458 GLY GLY A . n C 3 24 SER 24 459 459 SER SER A . n C 3 25 CYS 25 460 460 CYS CYS A . n C 3 26 LYS 26 461 461 LYS LYS A . n C 3 27 VAL 27 462 462 VAL VAL A . n C 3 28 PHE 28 463 463 PHE PHE A . n C 3 29 PHE 29 464 464 PHE PHE A . n C 3 30 LYS 30 465 465 LYS LYS A . n C 3 31 ARG 31 466 466 ARG ARG A . n C 3 32 ALA 32 467 467 ALA ALA A . n C 3 33 VAL 33 468 468 VAL VAL A . n C 3 34 GLU 34 469 469 GLU GLU A . n C 3 35 GLY 35 470 470 GLY GLY A . n C 3 36 GLN 36 471 471 GLN GLN A . n C 3 37 HIS 37 472 472 HIS HIS A . n C 3 38 ASN 38 473 473 ASN ASN A . n C 3 39 TYR 39 474 474 TYR TYR A . n C 3 40 LEU 40 475 475 LEU LEU A . n C 3 41 CYS 41 476 476 CYS CYS A . n C 3 42 ALA 42 477 477 ALA ALA A . n C 3 43 GLY 43 478 478 GLY GLY A . n C 3 44 ARG 44 479 479 ARG ARG A . n C 3 45 ASN 45 480 480 ASN ASN A . n C 3 46 ASP 46 481 481 ASP ASP A . n C 3 47 CYS 47 482 482 CYS CYS A . n C 3 48 ILE 48 483 483 ILE ILE A . n C 3 49 ILE 49 484 484 ILE ILE A . n C 3 50 ASP 50 485 485 ASP ASP A . n C 3 51 LYS 51 486 486 LYS LYS A . n C 3 52 ILE 52 487 487 ILE ILE A . n C 3 53 ARG 53 488 488 ARG ARG A . n C 3 54 ARG 54 489 489 ARG ARG A . n C 3 55 LYS 55 490 490 LYS LYS A . n C 3 56 ASN 56 491 491 ASN ASN A . n C 3 57 CYS 57 492 492 CYS CYS A . n C 3 58 PRO 58 493 493 PRO PRO A . n C 3 59 ALA 59 494 494 ALA ALA A . n C 3 60 CYS 60 495 495 CYS CYS A . n C 3 61 ARG 61 496 496 ARG ARG A . n C 3 62 TYR 62 497 497 TYR TYR A . n C 3 63 ARG 63 498 498 ARG ARG A . n C 3 64 LYS 64 499 499 LYS LYS A . n C 3 65 CYS 65 500 500 CYS CYS A . n C 3 66 LEU 66 501 501 LEU LEU A . n C 3 67 GLN 67 502 502 GLN GLN A . n C 3 68 ALA 68 503 503 ALA ALA A . n C 3 69 GLY 69 504 504 GLY GLY A . n C 3 70 MET 70 505 505 MET MET A . n C 3 71 ASN 71 506 506 ASN ASN A . n C 3 72 LEU 72 507 507 LEU LEU A . n C 3 73 GLU 73 508 508 GLU GLU A . n C 3 74 ALA 74 509 509 ALA ALA A . n C 3 75 ARG 75 510 510 ARG ARG A . n C 3 76 LYS 76 511 ? ? ? A . n C 3 77 THR 77 512 ? ? ? A . n C 3 78 LYS 78 513 ? ? ? A . n C 3 79 LYS 79 514 ? ? ? A . n C 3 80 LYS 80 515 ? ? ? A . n C 3 81 ILE 81 516 ? ? ? A . n C 3 82 LYS 82 517 ? ? ? A . n C 3 83 GLY 83 518 ? ? ? A . n C 3 84 ILE 84 519 ? ? ? A . n C 3 85 GLN 85 520 ? ? ? A . n C 3 86 GLN 86 521 ? ? ? A . n C 3 87 ALA 87 522 ? ? ? A . n C 3 88 THR 88 523 ? ? ? A . n C 3 89 ALA 89 524 ? ? ? A . n C 3 90 GLY 90 525 ? ? ? A . n D 3 1 GLY 1 436 ? ? ? B . n D 3 2 SER 2 437 437 SER ALA B . n D 3 3 HIS 3 438 438 HIS HIS B . n D 3 4 MET 4 439 439 MET MET B . n D 3 5 CYS 5 440 440 CYS CYS B . n D 3 6 LEU 6 441 441 LEU LEU B . n D 3 7 VAL 7 442 442 VAL VAL B . n D 3 8 CYS 8 443 443 CYS CYS B . n D 3 9 SER 9 444 444 SER SER B . n D 3 10 ASP 10 445 445 ASP ASP B . n D 3 11 GLU 11 446 446 GLU GLU B . n D 3 12 ALA 12 447 447 ALA ALA B . n D 3 13 SER 13 448 448 SER SER B . n D 3 14 GLY 14 449 449 GLY GLY B . n D 3 15 CYS 15 450 450 CYS CYS B . n D 3 16 HIS 16 451 451 HIS HIS B . n D 3 17 TYR 17 452 452 TYR TYR B . n D 3 18 GLY 18 453 453 GLY GLY B . n D 3 19 VAL 19 454 454 VAL VAL B . n D 3 20 LEU 20 455 455 LEU LEU B . n D 3 21 THR 21 456 456 THR THR B . n D 3 22 CYS 22 457 457 CYS CYS B . n D 3 23 GLY 23 458 458 GLY GLY B . n D 3 24 SER 24 459 459 SER SER B . n D 3 25 CYS 25 460 460 CYS CYS B . n D 3 26 LYS 26 461 461 LYS LYS B . n D 3 27 VAL 27 462 462 VAL VAL B . n D 3 28 PHE 28 463 463 PHE PHE B . n D 3 29 PHE 29 464 464 PHE PHE B . n D 3 30 LYS 30 465 465 LYS LYS B . n D 3 31 ARG 31 466 466 ARG ARG B . n D 3 32 ALA 32 467 467 ALA ALA B . n D 3 33 VAL 33 468 468 VAL VAL B . n D 3 34 GLU 34 469 469 GLU GLU B . n D 3 35 GLY 35 470 470 GLY GLY B . n D 3 36 GLN 36 471 471 GLN GLN B . n D 3 37 HIS 37 472 472 HIS HIS B . n D 3 38 ASN 38 473 473 ASN ASN B . n D 3 39 TYR 39 474 474 TYR TYR B . n D 3 40 LEU 40 475 475 LEU LEU B . n D 3 41 CYS 41 476 476 CYS CYS B . n D 3 42 ALA 42 477 477 ALA ALA B . n D 3 43 GLY 43 478 478 GLY GLY B . n D 3 44 ARG 44 479 479 ARG ARG B . n D 3 45 ASN 45 480 480 ASN ASN B . n D 3 46 ASP 46 481 481 ASP ASP B . n D 3 47 CYS 47 482 482 CYS CYS B . n D 3 48 ILE 48 483 483 ILE ILE B . n D 3 49 ILE 49 484 484 ILE ILE B . n D 3 50 ASP 50 485 485 ASP ASP B . n D 3 51 LYS 51 486 486 LYS LYS B . n D 3 52 ILE 52 487 487 ILE ILE B . n D 3 53 ARG 53 488 488 ARG ARG B . n D 3 54 ARG 54 489 489 ARG ARG B . n D 3 55 LYS 55 490 490 LYS LYS B . n D 3 56 ASN 56 491 491 ASN ASN B . n D 3 57 CYS 57 492 492 CYS CYS B . n D 3 58 PRO 58 493 493 PRO PRO B . n D 3 59 ALA 59 494 494 ALA ALA B . n D 3 60 CYS 60 495 495 CYS CYS B . n D 3 61 ARG 61 496 496 ARG ARG B . n D 3 62 TYR 62 497 497 TYR TYR B . n D 3 63 ARG 63 498 498 ARG ARG B . n D 3 64 LYS 64 499 499 LYS LYS B . n D 3 65 CYS 65 500 500 CYS CYS B . n D 3 66 LEU 66 501 501 LEU LEU B . n D 3 67 GLN 67 502 502 GLN GLN B . n D 3 68 ALA 68 503 503 ALA ALA B . n D 3 69 GLY 69 504 504 GLY GLY B . n D 3 70 MET 70 505 505 MET MET B . n D 3 71 ASN 71 506 506 ASN ASN B . n D 3 72 LEU 72 507 507 LEU LEU B . n D 3 73 GLU 73 508 508 GLU GLU B . n D 3 74 ALA 74 509 509 ALA ALA B . n D 3 75 ARG 75 510 510 ARG ARG B . n D 3 76 LYS 76 511 511 LYS LYS B . n D 3 77 THR 77 512 512 THR THR B . n D 3 78 LYS 78 513 513 LYS LYS B . n D 3 79 LYS 79 514 514 LYS LYS B . n D 3 80 LYS 80 515 515 LYS ALA B . n D 3 81 ILE 81 516 ? ? ? B . n D 3 82 LYS 82 517 ? ? ? B . n D 3 83 GLY 83 518 ? ? ? B . n D 3 84 ILE 84 519 ? ? ? B . n D 3 85 GLN 85 520 ? ? ? B . n D 3 86 GLN 86 521 ? ? ? B . n D 3 87 ALA 87 522 ? ? ? B . n D 3 88 THR 88 523 ? ? ? B . n D 3 89 ALA 89 524 ? ? ? B . n D 3 90 GLY 90 525 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 EDO 1 19 1 EDO EDO C . F 5 ZN 1 1514 1514 ZN ZN A . G 5 ZN 1 1515 1515 ZN ZN A . H 4 EDO 1 1 1 EDO EDO A . I 5 ZN 1 1512 1512 ZN ZN B . J 5 ZN 1 1513 1513 ZN ZN B . K 4 EDO 1 1 1 EDO EDO B . L 4 EDO 1 526 1 EDO EDO B . M 6 HOH 1 20 2 HOH HOH C . M 6 HOH 2 21 17 HOH HOH C . M 6 HOH 3 36 36 HOH HOH C . M 6 HOH 4 48 48 HOH HOH C . M 6 HOH 5 50 50 HOH HOH C . M 6 HOH 6 51 51 HOH HOH C . M 6 HOH 7 64 64 HOH HOH C . M 6 HOH 8 65 65 HOH HOH C . M 6 HOH 9 75 75 HOH HOH C . M 6 HOH 10 78 78 HOH HOH C . M 6 HOH 11 80 80 HOH HOH C . M 6 HOH 12 83 83 HOH HOH C . M 6 HOH 13 92 92 HOH HOH C . M 6 HOH 14 98 98 HOH HOH C . M 6 HOH 15 99 99 HOH HOH C . M 6 HOH 16 103 103 HOH HOH C . M 6 HOH 17 104 104 HOH HOH C . M 6 HOH 18 109 109 HOH HOH C . M 6 HOH 19 119 119 HOH HOH C . M 6 HOH 20 123 123 HOH HOH C . N 6 HOH 1 19 5 HOH HOH D . N 6 HOH 2 20 10 HOH HOH D . N 6 HOH 3 21 11 HOH HOH D . N 6 HOH 4 22 15 HOH HOH D . N 6 HOH 5 23 18 HOH HOH D . N 6 HOH 6 24 24 HOH HOH D . N 6 HOH 7 25 25 HOH HOH D . N 6 HOH 8 26 26 HOH HOH D . N 6 HOH 9 37 37 HOH HOH D . N 6 HOH 10 39 39 HOH HOH D . N 6 HOH 11 40 40 HOH HOH D . N 6 HOH 12 43 43 HOH HOH D . N 6 HOH 13 59 59 HOH HOH D . N 6 HOH 14 61 61 HOH HOH D . N 6 HOH 15 73 73 HOH HOH D . N 6 HOH 16 74 74 HOH HOH D . N 6 HOH 17 76 76 HOH HOH D . N 6 HOH 18 82 82 HOH HOH D . N 6 HOH 19 84 84 HOH HOH D . N 6 HOH 20 85 85 HOH HOH D . N 6 HOH 21 86 86 HOH HOH D . N 6 HOH 22 87 87 HOH HOH D . N 6 HOH 23 88 88 HOH HOH D . N 6 HOH 24 89 89 HOH HOH D . N 6 HOH 25 90 90 HOH HOH D . N 6 HOH 26 91 91 HOH HOH D . N 6 HOH 27 94 94 HOH HOH D . N 6 HOH 28 100 100 HOH HOH D . N 6 HOH 29 101 101 HOH HOH D . N 6 HOH 30 105 105 HOH HOH D . N 6 HOH 31 108 108 HOH HOH D . N 6 HOH 32 110 110 HOH HOH D . N 6 HOH 33 111 111 HOH HOH D . N 6 HOH 34 112 112 HOH HOH D . N 6 HOH 35 126 126 HOH HOH D . N 6 HOH 36 128 128 HOH HOH D . O 6 HOH 1 3 3 HOH HOH A . O 6 HOH 2 7 7 HOH HOH A . O 6 HOH 3 12 12 HOH HOH A . O 6 HOH 4 14 14 HOH HOH A . O 6 HOH 5 16 16 HOH HOH A . O 6 HOH 6 21 21 HOH HOH A . O 6 HOH 7 27 27 HOH HOH A . O 6 HOH 8 28 28 HOH HOH A . O 6 HOH 9 29 29 HOH HOH A . O 6 HOH 10 31 31 HOH HOH A . O 6 HOH 11 32 32 HOH HOH A . O 6 HOH 12 35 35 HOH HOH A . O 6 HOH 13 38 38 HOH HOH A . O 6 HOH 14 46 46 HOH HOH A . O 6 HOH 15 47 47 HOH HOH A . O 6 HOH 16 49 49 HOH HOH A . O 6 HOH 17 54 54 HOH HOH A . O 6 HOH 18 55 55 HOH HOH A . O 6 HOH 19 60 60 HOH HOH A . O 6 HOH 20 63 63 HOH HOH A . O 6 HOH 21 69 69 HOH HOH A . O 6 HOH 22 81 81 HOH HOH A . O 6 HOH 23 93 93 HOH HOH A . O 6 HOH 24 106 106 HOH HOH A . O 6 HOH 25 113 113 HOH HOH A . O 6 HOH 26 116 116 HOH HOH A . O 6 HOH 27 118 118 HOH HOH A . O 6 HOH 28 127 127 HOH HOH A . O 6 HOH 29 526 1 HOH HOH A . P 6 HOH 1 4 4 HOH HOH B . P 6 HOH 2 6 6 HOH HOH B . P 6 HOH 3 8 8 HOH HOH B . P 6 HOH 4 9 9 HOH HOH B . P 6 HOH 5 13 13 HOH HOH B . P 6 HOH 6 19 19 HOH HOH B . P 6 HOH 7 20 20 HOH HOH B . P 6 HOH 8 22 22 HOH HOH B . P 6 HOH 9 23 23 HOH HOH B . P 6 HOH 10 30 30 HOH HOH B . P 6 HOH 11 33 33 HOH HOH B . P 6 HOH 12 34 34 HOH HOH B . P 6 HOH 13 41 41 HOH HOH B . P 6 HOH 14 42 42 HOH HOH B . P 6 HOH 15 44 44 HOH HOH B . P 6 HOH 16 45 45 HOH HOH B . P 6 HOH 17 52 52 HOH HOH B . P 6 HOH 18 53 53 HOH HOH B . P 6 HOH 19 56 56 HOH HOH B . P 6 HOH 20 57 57 HOH HOH B . P 6 HOH 21 58 58 HOH HOH B . P 6 HOH 22 62 62 HOH HOH B . P 6 HOH 23 66 66 HOH HOH B . P 6 HOH 24 67 67 HOH HOH B . P 6 HOH 25 68 68 HOH HOH B . P 6 HOH 26 70 70 HOH HOH B . P 6 HOH 27 71 71 HOH HOH B . P 6 HOH 28 72 72 HOH HOH B . P 6 HOH 29 77 77 HOH HOH B . P 6 HOH 30 79 79 HOH HOH B . P 6 HOH 31 95 95 HOH HOH B . P 6 HOH 32 96 96 HOH HOH B . P 6 HOH 33 97 97 HOH HOH B . P 6 HOH 34 102 102 HOH HOH B . P 6 HOH 35 107 107 HOH HOH B . P 6 HOH 36 114 114 HOH HOH B . P 6 HOH 37 115 115 HOH HOH B . P 6 HOH 38 117 117 HOH HOH B . P 6 HOH 39 120 120 HOH HOH B . P 6 HOH 40 121 121 HOH HOH B . P 6 HOH 41 122 122 HOH HOH B . P 6 HOH 42 124 124 HOH HOH B . P 6 HOH 43 125 125 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6400 ? 1 MORE -13 ? 1 'SSA (A^2)' 12920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 5 ? A CYS 440 ? 1_555 ZN ? F ZN . ? A ZN 1514 ? 1_555 SG ? C CYS 8 ? A CYS 443 ? 1_555 110.9 ? 2 SG ? C CYS 5 ? A CYS 440 ? 1_555 ZN ? F ZN . ? A ZN 1514 ? 1_555 SG ? C CYS 22 ? A CYS 457 ? 1_555 113.6 ? 3 SG ? C CYS 8 ? A CYS 443 ? 1_555 ZN ? F ZN . ? A ZN 1514 ? 1_555 SG ? C CYS 22 ? A CYS 457 ? 1_555 108.5 ? 4 SG ? C CYS 5 ? A CYS 440 ? 1_555 ZN ? F ZN . ? A ZN 1514 ? 1_555 SG ? C CYS 25 ? A CYS 460 ? 1_555 108.4 ? 5 SG ? C CYS 8 ? A CYS 443 ? 1_555 ZN ? F ZN . ? A ZN 1514 ? 1_555 SG ? C CYS 25 ? A CYS 460 ? 1_555 113.7 ? 6 SG ? C CYS 22 ? A CYS 457 ? 1_555 ZN ? F ZN . ? A ZN 1514 ? 1_555 SG ? C CYS 25 ? A CYS 460 ? 1_555 101.4 ? 7 SG ? C CYS 41 ? A CYS 476 ? 1_555 ZN ? G ZN . ? A ZN 1515 ? 1_555 SG ? C CYS 47 ? A CYS 482 ? 1_555 105.5 ? 8 SG ? C CYS 41 ? A CYS 476 ? 1_555 ZN ? G ZN . ? A ZN 1515 ? 1_555 SG ? C CYS 57 ? A CYS 492 ? 1_555 111.2 ? 9 SG ? C CYS 47 ? A CYS 482 ? 1_555 ZN ? G ZN . ? A ZN 1515 ? 1_555 SG ? C CYS 57 ? A CYS 492 ? 1_555 114.3 ? 10 SG ? C CYS 41 ? A CYS 476 ? 1_555 ZN ? G ZN . ? A ZN 1515 ? 1_555 SG ? C CYS 60 ? A CYS 495 ? 1_555 106.6 ? 11 SG ? C CYS 47 ? A CYS 482 ? 1_555 ZN ? G ZN . ? A ZN 1515 ? 1_555 SG ? C CYS 60 ? A CYS 495 ? 1_555 110.9 ? 12 SG ? C CYS 57 ? A CYS 492 ? 1_555 ZN ? G ZN . ? A ZN 1515 ? 1_555 SG ? C CYS 60 ? A CYS 495 ? 1_555 108.1 ? 13 SG ? D CYS 5 ? B CYS 440 ? 1_555 ZN ? I ZN . ? B ZN 1512 ? 1_555 SG ? D CYS 8 ? B CYS 443 ? 1_555 105.9 ? 14 SG ? D CYS 5 ? B CYS 440 ? 1_555 ZN ? I ZN . ? B ZN 1512 ? 1_555 SG ? D CYS 22 ? B CYS 457 ? 1_555 118.5 ? 15 SG ? D CYS 8 ? B CYS 443 ? 1_555 ZN ? I ZN . ? B ZN 1512 ? 1_555 SG ? D CYS 22 ? B CYS 457 ? 1_555 105.1 ? 16 SG ? D CYS 5 ? B CYS 440 ? 1_555 ZN ? I ZN . ? B ZN 1512 ? 1_555 SG ? D CYS 25 ? B CYS 460 ? 1_555 110.4 ? 17 SG ? D CYS 8 ? B CYS 443 ? 1_555 ZN ? I ZN . ? B ZN 1512 ? 1_555 SG ? D CYS 25 ? B CYS 460 ? 1_555 112.3 ? 18 SG ? D CYS 22 ? B CYS 457 ? 1_555 ZN ? I ZN . ? B ZN 1512 ? 1_555 SG ? D CYS 25 ? B CYS 460 ? 1_555 104.6 ? 19 SG ? D CYS 41 ? B CYS 476 ? 1_555 ZN ? J ZN . ? B ZN 1513 ? 1_555 SG ? D CYS 47 ? B CYS 482 ? 1_555 104.2 ? 20 SG ? D CYS 41 ? B CYS 476 ? 1_555 ZN ? J ZN . ? B ZN 1513 ? 1_555 SG ? D CYS 57 ? B CYS 492 ? 1_555 115.7 ? 21 SG ? D CYS 47 ? B CYS 482 ? 1_555 ZN ? J ZN . ? B ZN 1513 ? 1_555 SG ? D CYS 57 ? B CYS 492 ? 1_555 113.2 ? 22 SG ? D CYS 41 ? B CYS 476 ? 1_555 ZN ? J ZN . ? B ZN 1513 ? 1_555 SG ? D CYS 60 ? B CYS 495 ? 1_555 106.6 ? 23 SG ? D CYS 47 ? B CYS 482 ? 1_555 ZN ? J ZN . ? B ZN 1513 ? 1_555 SG ? D CYS 60 ? B CYS 495 ? 1_555 110.5 ? 24 SG ? D CYS 57 ? B CYS 492 ? 1_555 ZN ? J ZN . ? B ZN 1513 ? 1_555 SG ? D CYS 60 ? B CYS 495 ? 1_555 106.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -14.5512 18.1998 -20.5435 0.3507 0.3498 0.3061 -0.0149 -0.0160 -0.0323 1.4486 2.1877 1.6558 -0.1446 0.1202 2.2302 0.0444 0.2661 -0.1584 -0.6127 -0.0396 0.1436 -0.4044 0.1038 0.0216 'X-RAY DIFFRACTION' 2 ? refined -9.4455 17.9320 6.5469 0.2605 0.3081 0.2403 0.0253 0.0295 0.0140 1.9899 1.5075 0.9275 0.7559 -0.4545 -0.7120 -0.0881 -0.1164 0.0707 0.1907 0.2063 0.0757 0.0200 -0.2115 -0.1241 'X-RAY DIFFRACTION' 3 ? refined -10.6162 2.4216 -9.5804 0.6217 0.4220 0.2352 -0.0751 -0.0747 -0.0365 0.5683 0.5640 0.1983 -0.4529 0.1357 0.3667 0.3049 -0.0303 -0.1891 -0.1647 0.1527 -0.0048 0.1786 0.0611 -0.2514 'X-RAY DIFFRACTION' 4 ? refined -9.1432 2.5535 -5.7747 0.5485 0.3844 0.2830 -0.0068 -0.0179 -0.0284 0.9242 0.7419 0.5337 -0.0539 0.4122 0.0175 0.2574 0.0155 -0.2079 0.0760 0.2135 0.0283 0.4787 0.0234 -0.3259 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 ? ? ? ? ? ? ? ? ? 'Chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'Chain B' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'Chain C' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'Chain D' 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' ICE ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 1 ? ? "C1'" C DC 1 ? ? N1 C DC 1 ? ? 113.46 108.30 5.16 0.30 N 2 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 112.31 108.30 4.01 0.30 N 3 1 "O4'" C DA 10 ? ? "C1'" C DA 10 ? ? N9 C DA 10 ? ? 99.33 108.00 -8.67 0.70 N 4 1 C6 C DT 12 ? ? C5 C DT 12 ? ? C7 C DT 12 ? ? 119.22 122.90 -3.68 0.60 N 5 1 "C3'" C DG 13 ? ? "C2'" C DG 13 ? ? "C1'" C DG 13 ? ? 97.02 102.40 -5.38 0.80 N 6 1 "O4'" C DT 14 ? ? "C1'" C DT 14 ? ? N1 C DT 14 ? ? 103.52 108.00 -4.48 0.70 N 7 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 102.80 108.00 -5.20 0.70 N 8 1 "O4'" C DG 18 ? ? "C1'" C DG 18 ? ? N9 C DG 18 ? ? 103.07 108.00 -4.93 0.70 N 9 1 "O4'" D DC 1 ? ? "C1'" D DC 1 ? ? N1 D DC 1 ? ? 102.24 108.00 -5.76 0.70 N 10 1 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 111.70 108.30 3.40 0.30 N 11 1 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? "C2'" D DA 3 ? ? 110.41 106.80 3.61 0.50 N 12 1 N3 D DT 10 ? ? C2 D DT 10 ? ? O2 D DT 10 ? ? 118.67 122.30 -3.63 0.60 N 13 1 N3 D DT 11 ? ? C2 D DT 11 ? ? O2 D DT 11 ? ? 117.35 122.30 -4.95 0.60 N 14 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? N1 D DT 15 ? ? 103.02 108.00 -4.98 0.70 N 15 1 "O4'" D DC 16 ? ? "C1'" D DC 16 ? ? N1 D DC 16 ? ? 102.78 108.00 -5.22 0.70 N 16 1 "O4'" D DT 17 ? ? "C1'" D DT 17 ? ? N1 D DT 17 ? ? 100.98 108.00 -7.02 0.70 N 17 1 "O4'" D DG 18 ? ? "C1'" D DG 18 ? ? N9 D DG 18 ? ? 101.63 108.00 -6.37 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 481 ? ? -147.42 37.28 2 1 HIS B 438 ? ? -142.26 45.82 3 1 ASP B 481 ? ? -140.60 40.06 4 1 LYS B 514 ? ? -87.15 48.98 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 437 ? OG ? C SER 2 OG 2 1 Y 1 B SER 437 ? OG ? D SER 2 OG 3 1 Y 1 B LYS 514 ? CG ? D LYS 79 CG 4 1 Y 1 B LYS 514 ? CD ? D LYS 79 CD 5 1 Y 1 B LYS 514 ? CE ? D LYS 79 CE 6 1 Y 1 B LYS 514 ? NZ ? D LYS 79 NZ 7 1 Y 1 B LYS 515 ? CG ? D LYS 80 CG 8 1 Y 1 B LYS 515 ? CD ? D LYS 80 CD 9 1 Y 1 B LYS 515 ? CE ? D LYS 80 CE 10 1 Y 1 B LYS 515 ? NZ ? D LYS 80 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 436 ? C GLY 1 2 1 Y 1 A LYS 511 ? C LYS 76 3 1 Y 1 A THR 512 ? C THR 77 4 1 Y 1 A LYS 513 ? C LYS 78 5 1 Y 1 A LYS 514 ? C LYS 79 6 1 Y 1 A LYS 515 ? C LYS 80 7 1 Y 1 A ILE 516 ? C ILE 81 8 1 Y 1 A LYS 517 ? C LYS 82 9 1 Y 1 A GLY 518 ? C GLY 83 10 1 Y 1 A ILE 519 ? C ILE 84 11 1 Y 1 A GLN 520 ? C GLN 85 12 1 Y 1 A GLN 521 ? C GLN 86 13 1 Y 1 A ALA 522 ? C ALA 87 14 1 Y 1 A THR 523 ? C THR 88 15 1 Y 1 A ALA 524 ? C ALA 89 16 1 Y 1 A GLY 525 ? C GLY 90 17 1 Y 1 B GLY 436 ? D GLY 1 18 1 Y 1 B ILE 516 ? D ILE 81 19 1 Y 1 B LYS 517 ? D LYS 82 20 1 Y 1 B GLY 518 ? D GLY 83 21 1 Y 1 B ILE 519 ? D ILE 84 22 1 Y 1 B GLN 520 ? D GLN 85 23 1 Y 1 B GLN 521 ? D GLN 86 24 1 Y 1 B ALA 522 ? D ALA 87 25 1 Y 1 B THR 523 ? D THR 88 26 1 Y 1 B ALA 524 ? D ALA 89 27 1 Y 1 B GLY 525 ? D GLY 90 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 EDO C1 C N N 231 EDO O1 O N N 232 EDO C2 C N N 233 EDO O2 O N N 234 EDO H11 H N N 235 EDO H12 H N N 236 EDO HO1 H N N 237 EDO H21 H N N 238 EDO H22 H N N 239 EDO HO2 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 PRO N N N N 426 PRO CA C N S 427 PRO C C N N 428 PRO O O N N 429 PRO CB C N N 430 PRO CG C N N 431 PRO CD C N N 432 PRO OXT O N N 433 PRO H H N N 434 PRO HA H N N 435 PRO HB2 H N N 436 PRO HB3 H N N 437 PRO HG2 H N N 438 PRO HG3 H N N 439 PRO HD2 H N N 440 PRO HD3 H N N 441 PRO HXT H N N 442 SER N N N N 443 SER CA C N S 444 SER C C N N 445 SER O O N N 446 SER CB C N N 447 SER OG O N N 448 SER OXT O N N 449 SER H H N N 450 SER H2 H N N 451 SER HA H N N 452 SER HB2 H N N 453 SER HB3 H N N 454 SER HG H N N 455 SER HXT H N N 456 THR N N N N 457 THR CA C N S 458 THR C C N N 459 THR O O N N 460 THR CB C N R 461 THR OG1 O N N 462 THR CG2 C N N 463 THR OXT O N N 464 THR H H N N 465 THR H2 H N N 466 THR HA H N N 467 THR HB H N N 468 THR HG1 H N N 469 THR HG21 H N N 470 THR HG22 H N N 471 THR HG23 H N N 472 THR HXT H N N 473 TYR N N N N 474 TYR CA C N S 475 TYR C C N N 476 TYR O O N N 477 TYR CB C N N 478 TYR CG C Y N 479 TYR CD1 C Y N 480 TYR CD2 C Y N 481 TYR CE1 C Y N 482 TYR CE2 C Y N 483 TYR CZ C Y N 484 TYR OH O N N 485 TYR OXT O N N 486 TYR H H N N 487 TYR H2 H N N 488 TYR HA H N N 489 TYR HB2 H N N 490 TYR HB3 H N N 491 TYR HD1 H N N 492 TYR HD2 H N N 493 TYR HE1 H N N 494 TYR HE2 H N N 495 TYR HH H N N 496 TYR HXT H N N 497 VAL N N N N 498 VAL CA C N S 499 VAL C C N N 500 VAL O O N N 501 VAL CB C N N 502 VAL CG1 C N N 503 VAL CG2 C N N 504 VAL OXT O N N 505 VAL H H N N 506 VAL H2 H N N 507 VAL HA H N N 508 VAL HB H N N 509 VAL HG11 H N N 510 VAL HG12 H N N 511 VAL HG13 H N N 512 VAL HG21 H N N 513 VAL HG22 H N N 514 VAL HG23 H N N 515 VAL HXT H N N 516 ZN ZN ZN N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 EDO C1 O1 sing N N 232 EDO C1 C2 sing N N 233 EDO C1 H11 sing N N 234 EDO C1 H12 sing N N 235 EDO O1 HO1 sing N N 236 EDO C2 O2 sing N N 237 EDO C2 H21 sing N N 238 EDO C2 H22 sing N N 239 EDO O2 HO2 sing N N 240 GLN N CA sing N N 241 GLN N H sing N N 242 GLN N H2 sing N N 243 GLN CA C sing N N 244 GLN CA CB sing N N 245 GLN CA HA sing N N 246 GLN C O doub N N 247 GLN C OXT sing N N 248 GLN CB CG sing N N 249 GLN CB HB2 sing N N 250 GLN CB HB3 sing N N 251 GLN CG CD sing N N 252 GLN CG HG2 sing N N 253 GLN CG HG3 sing N N 254 GLN CD OE1 doub N N 255 GLN CD NE2 sing N N 256 GLN NE2 HE21 sing N N 257 GLN NE2 HE22 sing N N 258 GLN OXT HXT sing N N 259 GLU N CA sing N N 260 GLU N H sing N N 261 GLU N H2 sing N N 262 GLU CA C sing N N 263 GLU CA CB sing N N 264 GLU CA HA sing N N 265 GLU C O doub N N 266 GLU C OXT sing N N 267 GLU CB CG sing N N 268 GLU CB HB2 sing N N 269 GLU CB HB3 sing N N 270 GLU CG CD sing N N 271 GLU CG HG2 sing N N 272 GLU CG HG3 sing N N 273 GLU CD OE1 doub N N 274 GLU CD OE2 sing N N 275 GLU OE2 HE2 sing N N 276 GLU OXT HXT sing N N 277 GLY N CA sing N N 278 GLY N H sing N N 279 GLY N H2 sing N N 280 GLY CA C sing N N 281 GLY CA HA2 sing N N 282 GLY CA HA3 sing N N 283 GLY C O doub N N 284 GLY C OXT sing N N 285 GLY OXT HXT sing N N 286 HIS N CA sing N N 287 HIS N H sing N N 288 HIS N H2 sing N N 289 HIS CA C sing N N 290 HIS CA CB sing N N 291 HIS CA HA sing N N 292 HIS C O doub N N 293 HIS C OXT sing N N 294 HIS CB CG sing N N 295 HIS CB HB2 sing N N 296 HIS CB HB3 sing N N 297 HIS CG ND1 sing Y N 298 HIS CG CD2 doub Y N 299 HIS ND1 CE1 doub Y N 300 HIS ND1 HD1 sing N N 301 HIS CD2 NE2 sing Y N 302 HIS CD2 HD2 sing N N 303 HIS CE1 NE2 sing Y N 304 HIS CE1 HE1 sing N N 305 HIS NE2 HE2 sing N N 306 HIS OXT HXT sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 ILE N CA sing N N 310 ILE N H sing N N 311 ILE N H2 sing N N 312 ILE CA C sing N N 313 ILE CA CB sing N N 314 ILE CA HA sing N N 315 ILE C O doub N N 316 ILE C OXT sing N N 317 ILE CB CG1 sing N N 318 ILE CB CG2 sing N N 319 ILE CB HB sing N N 320 ILE CG1 CD1 sing N N 321 ILE CG1 HG12 sing N N 322 ILE CG1 HG13 sing N N 323 ILE CG2 HG21 sing N N 324 ILE CG2 HG22 sing N N 325 ILE CG2 HG23 sing N N 326 ILE CD1 HD11 sing N N 327 ILE CD1 HD12 sing N N 328 ILE CD1 HD13 sing N N 329 ILE OXT HXT sing N N 330 LEU N CA sing N N 331 LEU N H sing N N 332 LEU N H2 sing N N 333 LEU CA C sing N N 334 LEU CA CB sing N N 335 LEU CA HA sing N N 336 LEU C O doub N N 337 LEU C OXT sing N N 338 LEU CB CG sing N N 339 LEU CB HB2 sing N N 340 LEU CB HB3 sing N N 341 LEU CG CD1 sing N N 342 LEU CG CD2 sing N N 343 LEU CG HG sing N N 344 LEU CD1 HD11 sing N N 345 LEU CD1 HD12 sing N N 346 LEU CD1 HD13 sing N N 347 LEU CD2 HD21 sing N N 348 LEU CD2 HD22 sing N N 349 LEU CD2 HD23 sing N N 350 LEU OXT HXT sing N N 351 LYS N CA sing N N 352 LYS N H sing N N 353 LYS N H2 sing N N 354 LYS CA C sing N N 355 LYS CA CB sing N N 356 LYS CA HA sing N N 357 LYS C O doub N N 358 LYS C OXT sing N N 359 LYS CB CG sing N N 360 LYS CB HB2 sing N N 361 LYS CB HB3 sing N N 362 LYS CG CD sing N N 363 LYS CG HG2 sing N N 364 LYS CG HG3 sing N N 365 LYS CD CE sing N N 366 LYS CD HD2 sing N N 367 LYS CD HD3 sing N N 368 LYS CE NZ sing N N 369 LYS CE HE2 sing N N 370 LYS CE HE3 sing N N 371 LYS NZ HZ1 sing N N 372 LYS NZ HZ2 sing N N 373 LYS NZ HZ3 sing N N 374 LYS OXT HXT sing N N 375 MET N CA sing N N 376 MET N H sing N N 377 MET N H2 sing N N 378 MET CA C sing N N 379 MET CA CB sing N N 380 MET CA HA sing N N 381 MET C O doub N N 382 MET C OXT sing N N 383 MET CB CG sing N N 384 MET CB HB2 sing N N 385 MET CB HB3 sing N N 386 MET CG SD sing N N 387 MET CG HG2 sing N N 388 MET CG HG3 sing N N 389 MET SD CE sing N N 390 MET CE HE1 sing N N 391 MET CE HE2 sing N N 392 MET CE HE3 sing N N 393 MET OXT HXT sing N N 394 PHE N CA sing N N 395 PHE N H sing N N 396 PHE N H2 sing N N 397 PHE CA C sing N N 398 PHE CA CB sing N N 399 PHE CA HA sing N N 400 PHE C O doub N N 401 PHE C OXT sing N N 402 PHE CB CG sing N N 403 PHE CB HB2 sing N N 404 PHE CB HB3 sing N N 405 PHE CG CD1 doub Y N 406 PHE CG CD2 sing Y N 407 PHE CD1 CE1 sing Y N 408 PHE CD1 HD1 sing N N 409 PHE CD2 CE2 doub Y N 410 PHE CD2 HD2 sing N N 411 PHE CE1 CZ doub Y N 412 PHE CE1 HE1 sing N N 413 PHE CE2 CZ sing Y N 414 PHE CE2 HE2 sing N N 415 PHE CZ HZ sing N N 416 PHE OXT HXT sing N N 417 PRO N CA sing N N 418 PRO N CD sing N N 419 PRO N H sing N N 420 PRO CA C sing N N 421 PRO CA CB sing N N 422 PRO CA HA sing N N 423 PRO C O doub N N 424 PRO C OXT sing N N 425 PRO CB CG sing N N 426 PRO CB HB2 sing N N 427 PRO CB HB3 sing N N 428 PRO CG CD sing N N 429 PRO CG HG2 sing N N 430 PRO CG HG3 sing N N 431 PRO CD HD2 sing N N 432 PRO CD HD3 sing N N 433 PRO OXT HXT sing N N 434 SER N CA sing N N 435 SER N H sing N N 436 SER N H2 sing N N 437 SER CA C sing N N 438 SER CA CB sing N N 439 SER CA HA sing N N 440 SER C O doub N N 441 SER C OXT sing N N 442 SER CB OG sing N N 443 SER CB HB2 sing N N 444 SER CB HB3 sing N N 445 SER OG HG sing N N 446 SER OXT HXT sing N N 447 THR N CA sing N N 448 THR N H sing N N 449 THR N H2 sing N N 450 THR CA C sing N N 451 THR CA CB sing N N 452 THR CA HA sing N N 453 THR C O doub N N 454 THR C OXT sing N N 455 THR CB OG1 sing N N 456 THR CB CG2 sing N N 457 THR CB HB sing N N 458 THR OG1 HG1 sing N N 459 THR CG2 HG21 sing N N 460 THR CG2 HG22 sing N N 461 THR CG2 HG23 sing N N 462 THR OXT HXT sing N N 463 TYR N CA sing N N 464 TYR N H sing N N 465 TYR N H2 sing N N 466 TYR CA C sing N N 467 TYR CA CB sing N N 468 TYR CA HA sing N N 469 TYR C O doub N N 470 TYR C OXT sing N N 471 TYR CB CG sing N N 472 TYR CB HB2 sing N N 473 TYR CB HB3 sing N N 474 TYR CG CD1 doub Y N 475 TYR CG CD2 sing Y N 476 TYR CD1 CE1 sing Y N 477 TYR CD1 HD1 sing N N 478 TYR CD2 CE2 doub Y N 479 TYR CD2 HD2 sing N N 480 TYR CE1 CZ doub Y N 481 TYR CE1 HE1 sing N N 482 TYR CE2 CZ sing Y N 483 TYR CE2 HE2 sing N N 484 TYR CZ OH sing N N 485 TYR OH HH sing N N 486 TYR OXT HXT sing N N 487 VAL N CA sing N N 488 VAL N H sing N N 489 VAL N H2 sing N N 490 VAL CA C sing N N 491 VAL CA CB sing N N 492 VAL CA HA sing N N 493 VAL C O doub N N 494 VAL C OXT sing N N 495 VAL CB CG1 sing N N 496 VAL CB CG2 sing N N 497 VAL CB HB sing N N 498 VAL CG1 HG11 sing N N 499 VAL CG1 HG12 sing N N 500 VAL CG1 HG13 sing N N 501 VAL CG2 HG21 sing N N 502 VAL CG2 HG22 sing N N 503 VAL CG2 HG23 sing N N 504 VAL OXT HXT sing N N 505 # _ndb_struct_conf_na.entry_id 3G9J _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 18 1_555 0.162 -0.244 0.075 13.784 -10.271 -5.645 1 C_DC2:DG18_D C 2 ? D 18 ? 19 1 1 A DA 3 1_555 B DT 17 1_555 -0.131 -0.107 0.425 10.644 -3.274 -1.394 2 C_DA3:DT17_D C 3 ? D 17 ? 20 1 1 A DG 4 1_555 B DC 16 1_555 -0.155 -0.195 0.376 17.158 -11.924 0.302 3 C_DG4:DC16_D C 4 ? D 16 ? 19 1 1 A DA 5 1_555 B DT 15 1_555 -0.251 -0.294 -0.171 0.612 -19.831 2.217 4 C_DA5:DT15_D C 5 ? D 15 ? 20 1 1 A DA 6 1_555 B DT 14 1_555 0.205 -0.193 0.345 8.326 -8.179 -1.177 5 C_DA6:DT14_D C 6 ? D 14 ? 20 1 1 A DC 7 1_555 B DG 13 1_555 0.413 -0.100 -0.265 8.141 -11.058 0.957 6 C_DC7:DG13_D C 7 ? D 13 ? 19 1 1 A DA 8 1_555 B DT 12 1_555 -0.071 -0.095 -0.054 3.257 -8.851 2.469 7 C_DA8:DT12_D C 8 ? D 12 ? 20 1 1 A DA 9 1_555 B DT 11 1_555 0.389 -0.221 0.180 4.405 -13.426 6.086 8 C_DA9:DT11_D C 9 ? D 11 ? 20 1 1 A DA 10 1_555 B DT 10 1_555 0.645 -0.494 0.156 -0.288 -14.428 1.265 9 C_DA10:DT10_D C 10 ? D 10 ? 20 1 1 A DA 11 1_555 B DT 9 1_555 0.615 -0.450 -0.382 -3.831 -11.572 -2.450 10 C_DA11:DT9_D C 11 ? D 9 ? 20 1 1 A DT 12 1_555 B DA 8 1_555 0.178 -0.129 0.098 2.082 -9.993 7.426 11 C_DT12:DA8_D C 12 ? D 8 ? 20 1 1 A DG 13 1_555 B DC 7 1_555 -0.592 -0.070 -0.144 -4.703 -11.425 1.852 12 C_DG13:DC7_D C 13 ? D 7 ? 19 1 1 A DT 14 1_555 B DA 6 1_555 -0.297 -0.331 0.503 -13.829 -12.608 2.473 13 C_DT14:DA6_D C 14 ? D 6 ? 20 1 1 A DT 15 1_555 B DA 5 1_555 0.000 -0.067 -0.134 -0.609 -15.941 5.044 14 C_DT15:DA5_D C 15 ? D 5 ? 20 1 1 A DC 16 1_555 B DG 4 1_555 0.607 0.061 0.351 -17.060 -8.676 3.649 15 C_DC16:DG4_D C 16 ? D 4 ? 19 1 1 A DT 17 1_555 B DA 3 1_555 0.177 -0.073 0.597 -3.889 -8.798 1.311 16 C_DT17:DA3_D C 17 ? D 3 ? 20 1 1 A DG 18 1_555 B DC 2 1_555 -0.625 -0.235 0.123 -11.817 -6.245 -1.461 17 C_DG18:DC2_D C 18 ? D 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 18 1_555 A DA 3 1_555 B DT 17 1_555 -0.002 -0.019 3.313 -1.900 5.643 41.011 -0.637 -0.203 3.279 8.003 2.695 41.422 1 CC_DC2DA3:DT17DG18_DD C 2 ? D 18 ? C 3 ? D 17 ? 1 A DA 3 1_555 B DT 17 1_555 A DG 4 1_555 B DC 16 1_555 0.364 -0.316 3.249 1.064 -1.509 31.989 -0.301 -0.469 3.270 -2.736 -1.929 32.041 2 CC_DA3DG4:DC16DT17_DD C 3 ? D 17 ? C 4 ? D 16 ? 1 A DG 4 1_555 B DC 16 1_555 A DA 5 1_555 B DT 15 1_555 0.028 -0.399 3.576 3.573 0.415 39.943 -0.634 0.404 3.561 0.606 -5.217 40.098 3 CC_DG4DA5:DT15DC16_DD C 4 ? D 16 ? C 5 ? D 15 ? 1 A DA 5 1_555 B DT 15 1_555 A DA 6 1_555 B DT 14 1_555 0.253 -0.012 3.006 -3.535 -6.711 38.427 0.719 -0.766 2.933 -10.077 5.307 39.140 4 CC_DA5DA6:DT14DT15_DD C 5 ? D 15 ? C 6 ? D 14 ? 1 A DA 6 1_555 B DT 14 1_555 A DC 7 1_555 B DG 13 1_555 0.711 -0.577 3.301 4.463 -1.375 39.069 -0.690 -0.514 3.377 -2.047 -6.645 39.337 5 CC_DA6DC7:DG13DT14_DD C 6 ? D 14 ? C 7 ? D 13 ? 1 A DC 7 1_555 B DG 13 1_555 A DA 8 1_555 B DT 12 1_555 0.268 -0.833 3.399 -0.666 2.615 29.517 -2.195 -0.668 3.308 5.119 1.303 29.637 6 CC_DC7DA8:DT12DG13_DD C 7 ? D 13 ? C 8 ? D 12 ? 1 A DA 8 1_555 B DT 12 1_555 A DA 9 1_555 B DT 11 1_555 -0.174 -0.314 3.225 0.072 -0.141 38.211 -0.462 0.275 3.226 -0.216 -0.109 38.212 7 CC_DA8DA9:DT11DT12_DD C 8 ? D 12 ? C 9 ? D 11 ? 1 A DA 9 1_555 B DT 11 1_555 A DA 10 1_555 B DT 10 1_555 -0.643 -0.325 3.300 -1.422 -1.245 37.698 -0.339 0.807 3.330 -1.925 2.200 37.744 8 CC_DA9DA10:DT10DT11_DD C 9 ? D 11 ? C 10 ? D 10 ? 1 A DA 10 1_555 B DT 10 1_555 A DA 11 1_555 B DT 9 1_555 -0.164 -0.687 3.289 2.444 -2.232 34.483 -0.807 0.656 3.307 -3.755 -4.111 34.637 9 CC_DA10DA11:DT9DT10_DD C 10 ? D 10 ? C 11 ? D 9 ? 1 A DA 11 1_555 B DT 9 1_555 A DT 12 1_555 B DA 8 1_555 0.597 -0.955 3.196 -4.003 -7.355 33.084 -0.461 -1.653 3.236 -12.665 6.894 34.099 10 CC_DA11DT12:DA8DT9_DD C 11 ? D 9 ? C 12 ? D 8 ? 1 A DT 12 1_555 B DA 8 1_555 A DG 13 1_555 B DC 7 1_555 -0.381 -1.177 3.408 1.601 6.293 28.177 -3.757 1.119 3.053 12.713 -3.234 28.901 11 CC_DT12DG13:DC7DA8_DD C 12 ? D 8 ? C 13 ? D 7 ? 1 A DG 13 1_555 B DC 7 1_555 A DT 14 1_555 B DA 6 1_555 -0.575 -0.641 3.578 -3.885 -2.437 38.356 -0.636 0.338 3.649 -3.692 5.887 38.619 12 CC_DG13DT14:DA6DC7_DD C 13 ? D 7 ? C 14 ? D 6 ? 1 A DT 14 1_555 B DA 6 1_555 A DT 15 1_555 B DA 5 1_555 -0.231 0.056 2.879 4.495 -9.396 38.620 1.028 0.792 2.750 -13.901 -6.650 39.949 13 CC_DT14DT15:DA5DA6_DD C 14 ? D 6 ? C 15 ? D 5 ? 1 A DT 15 1_555 B DA 5 1_555 A DC 16 1_555 B DG 4 1_555 -0.073 -0.446 3.697 -4.753 1.538 40.644 -0.827 -0.482 3.664 2.204 6.811 40.937 14 CC_DT15DC16:DG4DA5_DD C 15 ? D 5 ? C 16 ? D 4 ? 1 A DC 16 1_555 B DG 4 1_555 A DT 17 1_555 B DA 3 1_555 -0.102 -0.358 3.027 -3.779 2.734 30.943 -1.141 -0.470 2.976 5.088 7.033 31.284 15 CC_DC16DT17:DA3DG4_DD C 16 ? D 4 ? C 17 ? D 3 ? 1 A DT 17 1_555 B DA 3 1_555 A DG 18 1_555 B DC 2 1_555 -0.096 -0.018 3.359 3.405 1.379 38.911 -0.197 0.563 3.337 2.064 -5.097 39.077 16 CC_DT17DG18:DC2DA3_DD C 17 ? D 3 ? C 18 ? D 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1,2-ETHANEDIOL EDO 5 'ZINC ION' ZN 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GLU _pdbx_initial_refinement_model.details ? #