HEADER CYTOKINE/CYTOKINE RECEPTOR 14-FEB-09 3G9V TITLE CRYSTAL STRUCTURE OF A SOLUBLE DECOY RECEPTOR IL-22BP BOUND TO TITLE 2 INTERLEUKIN-22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN 22 RECEPTOR, ALPHA 2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 21-231; COMPND 5 SYNONYM: INTERLEUKIN-22 BINDING PROTEIN, ISOFORM CRA_A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INTERLEUKIN-22; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 29-179; COMPND 11 SYNONYM: IL-22, IL-10-RELATED T-CELL-DERIVED-INDUCIBLE FACTOR, IL- COMPND 12 TIF; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL22RA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: IL22; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CYTOKINE, CYTOKINE RECEPTOR, RECEPTOR, GLYCOPROTEIN, POLYMORPHISM, KEYWDS 2 SECRETED, CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.R.DE MOURA,L.WATANABE,L.BLEICHER,D.COLAU,J.-C.RENAULD,I.POLIKARPOV REVDAT 3 30-OCT-24 3G9V 1 REMARK REVDAT 2 01-NOV-23 3G9V 1 REMARK REVDAT 1 14-APR-09 3G9V 0 JRNL AUTH P.R.DE MOURA,L.WATANABE,L.BLEICHER,D.COLAU,L.DUMOUTIER, JRNL AUTH 2 M.M.LEMAIRE,J.-C.RENAULD,I.POLIKARPOV JRNL TITL CRYSTAL STRUCTURE OF A SOLUBLE DECOY RECEPTOR IL-22BP BOUND JRNL TITL 2 TO INTERLEUKIN-22 JRNL REF FEBS LETT. V. 583 1072 2009 JRNL REFN ISSN 0014-5793 JRNL PMID 19285080 JRNL DOI 10.1016/J.FEBSLET.2009.03.006 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 19438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8426 - 5.2574 0.90 2508 113 0.2480 0.3152 REMARK 3 2 5.2574 - 4.1794 0.95 2602 140 0.1707 0.2342 REMARK 3 3 4.1794 - 3.6530 0.96 2616 154 0.1830 0.2317 REMARK 3 4 3.6530 - 3.3199 0.98 2669 151 0.1858 0.2895 REMARK 3 5 3.3199 - 3.0824 0.99 2670 148 0.2116 0.2941 REMARK 3 6 3.0824 - 2.9009 0.99 2701 131 0.2225 0.3126 REMARK 3 7 2.9009 - 2.7558 0.98 2679 156 0.2277 0.3404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 41.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44400 REMARK 3 B22 (A**2) : 0.44400 REMARK 3 B33 (A**2) : -0.88800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5210 REMARK 3 ANGLE : 1.233 7025 REMARK 3 CHIRALITY : 0.088 744 REMARK 3 PLANARITY : 0.005 907 REMARK 3 DIHEDRAL : 18.737 1941 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 29:52 or resseq REMARK 3 56:136 or resseq 142:160 or resseq 162: REMARK 3 176 or resseq 183:195 or resseq 206:223 ) REMARK 3 SELECTION : chain C and (resseq 29:52 or resseq REMARK 3 56:136 or resseq 142:160 or resseq 162: REMARK 3 176 or resseq 183:195 or resseq 206:223 ) REMARK 3 ATOM PAIRS NUMBER : 1433 REMARK 3 RMSD : 0.050 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain B and (resseq 41:130 or resseq REMARK 3 140:178 ) REMARK 3 SELECTION : chain D and (resseq 41:130 or resseq REMARK 3 140:178 ) REMARK 3 ATOM PAIRS NUMBER : 1044 REMARK 3 RMSD : 0.053 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.43 REMARK 200 MONOCHROMATOR : TWO SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM BICINE, 150MM NACL, 1MM CHAPS, PH REMARK 280 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.26650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.13325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.39975 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 GLN A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 HIS A 26 REMARK 465 GLU A 27 REMARK 465 SER A 28 REMARK 465 LEU A 53 REMARK 465 THR A 54 REMARK 465 GLY A 55 REMARK 465 GLN A 137 REMARK 465 VAL A 138 REMARK 465 ASN A 139 REMARK 465 GLY A 140 REMARK 465 SER A 141 REMARK 465 ASN A 177 REMARK 465 ASN A 178 REMARK 465 SER A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 LYS A 182 REMARK 465 ILE A 196 REMARK 465 GLU A 197 REMARK 465 ALA A 198 REMARK 465 LEU A 199 REMARK 465 THR A 200 REMARK 465 PRO A 201 REMARK 465 HIS A 202 REMARK 465 SER A 203 REMARK 465 SER A 204 REMARK 465 TYR A 205 REMARK 465 ARG A 226 REMARK 465 CYS A 227 REMARK 465 VAL A 228 REMARK 465 GLU A 229 REMARK 465 ILE A 230 REMARK 465 PRO A 231 REMARK 465 GLN B 29 REMARK 465 GLY B 30 REMARK 465 GLY B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 ALA B 34 REMARK 465 PRO B 35 REMARK 465 ILE B 36 REMARK 465 SER B 37 REMARK 465 SER B 38 REMARK 465 ILE B 134 REMARK 465 GLU B 135 REMARK 465 GLY B 136 REMARK 465 ASP B 137 REMARK 465 ASP B 138 REMARK 465 LEU B 139 REMARK 465 ILE B 179 REMARK 465 GLY C 21 REMARK 465 THR C 22 REMARK 465 GLN C 23 REMARK 465 SER C 24 REMARK 465 THR C 25 REMARK 465 LEU C 53 REMARK 465 THR C 54 REMARK 465 GLY C 55 REMARK 465 VAL C 138 REMARK 465 ASN C 139 REMARK 465 GLY C 140 REMARK 465 SER C 141 REMARK 465 ASN C 177 REMARK 465 ASN C 178 REMARK 465 SER C 179 REMARK 465 LEU C 180 REMARK 465 GLU C 181 REMARK 465 LYS C 182 REMARK 465 ILE C 196 REMARK 465 GLU C 197 REMARK 465 ALA C 198 REMARK 465 LEU C 199 REMARK 465 THR C 200 REMARK 465 PRO C 201 REMARK 465 HIS C 202 REMARK 465 SER C 203 REMARK 465 SER C 204 REMARK 465 GLU C 224 REMARK 465 GLU C 225 REMARK 465 ARG C 226 REMARK 465 CYS C 227 REMARK 465 VAL C 228 REMARK 465 GLU C 229 REMARK 465 ILE C 230 REMARK 465 PRO C 231 REMARK 465 GLN D 29 REMARK 465 GLY D 30 REMARK 465 GLY D 31 REMARK 465 ALA D 32 REMARK 465 ALA D 33 REMARK 465 ALA D 34 REMARK 465 PRO D 35 REMARK 465 ILE D 36 REMARK 465 SER D 37 REMARK 465 SER D 38 REMARK 465 HIS D 39 REMARK 465 CYS D 40 REMARK 465 THR D 131 REMARK 465 CYS D 132 REMARK 465 HIS D 133 REMARK 465 ILE D 134 REMARK 465 GLU D 135 REMARK 465 GLY D 136 REMARK 465 ASP D 137 REMARK 465 ASP D 138 REMARK 465 LEU D 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 161 CG1 CG2 REMARK 470 SER C 110 OG REMARK 470 THR C 136 CG2 REMARK 470 GLU D 77 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 29 CG CD1 CD2 REMARK 480 GLU A 224 CB CG CD OE1 OE2 REMARK 480 LYS B 44 CG CD CE NZ REMARK 480 ILE B 52 CG1 CD1 REMARK 480 LYS B 61 CE NZ REMARK 480 LYS B 78 CG CD CE NZ REMARK 480 LYS B 93 CD CE NZ REMARK 480 LYS B 147 CD CE NZ REMARK 480 LYS B 153 CE NZ REMARK 480 LYS B 154 CG CD CE NZ REMARK 480 ARG C 33 NE CZ NH1 NH2 REMARK 480 GLN C 35 CD OE1 NE2 REMARK 480 LYS C 73 CD CE NZ REMARK 480 ASP C 77 CG OD1 OD2 REMARK 480 LYS D 44 CG CD CE REMARK 480 ILE D 52 CG1 CD1 REMARK 480 GLU D 87 CG CD OE1 OE2 REMARK 480 LYS D 93 CG CD CE NZ REMARK 480 GLU D 101 CD OE1 OE2 REMARK 480 ARG D 143 NE CZ NH1 NH2 REMARK 480 ASP D 150 CB CG OD1 OD2 REMARK 480 ARG D 175 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 130 CG2 THR B 131 1.66 REMARK 500 O ASN B 127 OG SER B 130 2.03 REMARK 500 SG CYS B 40 O THR B 131 2.10 REMARK 500 O LEU B 129 N THR B 131 2.14 REMARK 500 O ILE A 175 N GLU A 183 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 129 CG LEU B 129 CD2 -0.295 REMARK 500 LEU B 129 CA LEU B 129 C -0.163 REMARK 500 LEU B 129 C LEU B 129 O -0.179 REMARK 500 SER B 130 N SER B 130 CA -0.123 REMARK 500 SER B 130 CA SER B 130 CB -0.114 REMARK 500 SER B 130 CB SER B 130 OG -0.084 REMARK 500 THR B 131 CA THR B 131 CB -0.218 REMARK 500 CYS B 132 C CYS B 132 O -0.134 REMARK 500 PHE C 174 N PHE C 174 CA -0.121 REMARK 500 PHE C 174 CG PHE C 174 CD2 -0.118 REMARK 500 PHE C 174 CG PHE C 174 CD1 -0.162 REMARK 500 PHE C 174 CD1 PHE C 174 CE1 -0.284 REMARK 500 PHE C 174 CE1 PHE C 174 CZ -0.227 REMARK 500 PHE C 174 CZ PHE C 174 CE2 -0.296 REMARK 500 PHE C 174 CE2 PHE C 174 CD2 -0.252 REMARK 500 PHE C 174 C PHE C 174 O -0.196 REMARK 500 ILE C 175 CA ILE C 175 CB -0.174 REMARK 500 ILE C 175 CB ILE C 175 CG2 -0.235 REMARK 500 ILE C 175 C ILE C 175 O -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 175 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 175 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ILE C 175 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG D 175 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG D 175 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 41 16.78 56.21 REMARK 500 ARG A 51 139.44 -30.01 REMARK 500 TYR A 67 130.33 -38.89 REMARK 500 CYS A 78 72.44 -116.60 REMARK 500 PRO A 149 161.99 -49.10 REMARK 500 HIS A 191 -151.35 -107.04 REMARK 500 CYS B 40 75.14 161.75 REMARK 500 ASN B 69 88.24 -68.78 REMARK 500 HIS B 81 107.80 -43.66 REMARK 500 ARG B 128 -15.29 -46.04 REMARK 500 THR B 131 -177.50 -171.76 REMARK 500 CYS B 132 -164.95 -122.94 REMARK 500 PHE B 171 -72.77 -56.77 REMARK 500 GLU C 27 108.99 -57.81 REMARK 500 SER C 28 26.69 -152.19 REMARK 500 PHE C 41 15.79 59.32 REMARK 500 ARG C 51 139.74 -31.41 REMARK 500 TYR C 67 129.77 -36.93 REMARK 500 CYS C 78 73.17 -116.77 REMARK 500 LYS C 185 101.78 -49.56 REMARK 500 HIS C 191 -149.53 -106.63 REMARK 500 HIS D 81 108.16 -44.32 REMARK 500 PHE D 171 -71.75 -58.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 192 ALA A 193 -149.95 REMARK 500 SER B 130 THR B 131 124.87 REMARK 500 THR B 131 CYS B 132 -119.81 REMARK 500 ILE C 175 ILE C 176 136.93 REMARK 500 ARG C 192 ALA C 193 -149.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 3G9V A 21 231 UNP Q08AH7 Q08AH7_HUMAN 21 231 DBREF 3G9V B 29 179 UNP Q9GZX6 IL22_HUMAN 29 179 DBREF 3G9V C 21 231 UNP Q08AH7 Q08AH7_HUMAN 21 231 DBREF 3G9V D 29 179 UNP Q9GZX6 IL22_HUMAN 29 179 SEQRES 1 A 211 GLY THR GLN SER THR HIS GLU SER LEU LYS PRO GLN ARG SEQRES 2 A 211 VAL GLN PHE GLN SER ARG ASN PHE HIS ASN ILE LEU GLN SEQRES 3 A 211 TRP GLN PRO GLY ARG ALA LEU THR GLY ASN SER SER VAL SEQRES 4 A 211 TYR PHE VAL GLN TYR LYS ILE TYR GLY GLN ARG GLN TRP SEQRES 5 A 211 LYS ASN LYS GLU ASP CYS TRP GLY THR GLN GLU LEU SER SEQRES 6 A 211 CYS ASP LEU THR SER GLU THR SER ASP ILE GLN GLU PRO SEQRES 7 A 211 TYR TYR GLY ARG VAL ARG ALA ALA SER ALA GLY SER TYR SEQRES 8 A 211 SER GLU TRP SER MET THR PRO ARG PHE THR PRO TRP TRP SEQRES 9 A 211 GLU THR LYS ILE ASP PRO PRO VAL MET ASN ILE THR GLN SEQRES 10 A 211 VAL ASN GLY SER LEU LEU VAL ILE LEU HIS ALA PRO ASN SEQRES 11 A 211 LEU PRO TYR ARG TYR GLN LYS GLU LYS ASN VAL SER ILE SEQRES 12 A 211 GLU ASP TYR TYR GLU LEU LEU TYR ARG VAL PHE ILE ILE SEQRES 13 A 211 ASN ASN SER LEU GLU LYS GLU GLN LYS VAL TYR GLU GLY SEQRES 14 A 211 ALA HIS ARG ALA VAL GLU ILE GLU ALA LEU THR PRO HIS SEQRES 15 A 211 SER SER TYR CYS VAL VAL ALA GLU ILE TYR GLN PRO MET SEQRES 16 A 211 LEU ASP ARG ARG SER GLN ARG SER GLU GLU ARG CYS VAL SEQRES 17 A 211 GLU ILE PRO SEQRES 1 B 151 GLN GLY GLY ALA ALA ALA PRO ILE SER SER HIS CYS ARG SEQRES 2 B 151 LEU ASP LYS SER ASN PHE GLN GLN PRO TYR ILE THR ASN SEQRES 3 B 151 ARG THR PHE MET LEU ALA LYS GLU ALA SER LEU ALA ASP SEQRES 4 B 151 ASN ASN THR ASP VAL ARG LEU ILE GLY GLU LYS LEU PHE SEQRES 5 B 151 HIS GLY VAL SER MET SER GLU ARG CYS TYR LEU MET LYS SEQRES 6 B 151 GLN VAL LEU ASN PHE THR LEU GLU GLU VAL LEU PHE PRO SEQRES 7 B 151 GLN SER ASP ARG PHE GLN PRO TYR MET GLN GLU VAL VAL SEQRES 8 B 151 PRO PHE LEU ALA ARG LEU SER ASN ARG LEU SER THR CYS SEQRES 9 B 151 HIS ILE GLU GLY ASP ASP LEU HIS ILE GLN ARG ASN VAL SEQRES 10 B 151 GLN LYS LEU LYS ASP THR VAL LYS LYS LEU GLY GLU SER SEQRES 11 B 151 GLY GLU ILE LYS ALA ILE GLY GLU LEU ASP LEU LEU PHE SEQRES 12 B 151 MET SER LEU ARG ASN ALA CYS ILE SEQRES 1 C 211 GLY THR GLN SER THR HIS GLU SER LEU LYS PRO GLN ARG SEQRES 2 C 211 VAL GLN PHE GLN SER ARG ASN PHE HIS ASN ILE LEU GLN SEQRES 3 C 211 TRP GLN PRO GLY ARG ALA LEU THR GLY ASN SER SER VAL SEQRES 4 C 211 TYR PHE VAL GLN TYR LYS ILE TYR GLY GLN ARG GLN TRP SEQRES 5 C 211 LYS ASN LYS GLU ASP CYS TRP GLY THR GLN GLU LEU SER SEQRES 6 C 211 CYS ASP LEU THR SER GLU THR SER ASP ILE GLN GLU PRO SEQRES 7 C 211 TYR TYR GLY ARG VAL ARG ALA ALA SER ALA GLY SER TYR SEQRES 8 C 211 SER GLU TRP SER MET THR PRO ARG PHE THR PRO TRP TRP SEQRES 9 C 211 GLU THR LYS ILE ASP PRO PRO VAL MET ASN ILE THR GLN SEQRES 10 C 211 VAL ASN GLY SER LEU LEU VAL ILE LEU HIS ALA PRO ASN SEQRES 11 C 211 LEU PRO TYR ARG TYR GLN LYS GLU LYS ASN VAL SER ILE SEQRES 12 C 211 GLU ASP TYR TYR GLU LEU LEU TYR ARG VAL PHE ILE ILE SEQRES 13 C 211 ASN ASN SER LEU GLU LYS GLU GLN LYS VAL TYR GLU GLY SEQRES 14 C 211 ALA HIS ARG ALA VAL GLU ILE GLU ALA LEU THR PRO HIS SEQRES 15 C 211 SER SER TYR CYS VAL VAL ALA GLU ILE TYR GLN PRO MET SEQRES 16 C 211 LEU ASP ARG ARG SER GLN ARG SER GLU GLU ARG CYS VAL SEQRES 17 C 211 GLU ILE PRO SEQRES 1 D 151 GLN GLY GLY ALA ALA ALA PRO ILE SER SER HIS CYS ARG SEQRES 2 D 151 LEU ASP LYS SER ASN PHE GLN GLN PRO TYR ILE THR ASN SEQRES 3 D 151 ARG THR PHE MET LEU ALA LYS GLU ALA SER LEU ALA ASP SEQRES 4 D 151 ASN ASN THR ASP VAL ARG LEU ILE GLY GLU LYS LEU PHE SEQRES 5 D 151 HIS GLY VAL SER MET SER GLU ARG CYS TYR LEU MET LYS SEQRES 6 D 151 GLN VAL LEU ASN PHE THR LEU GLU GLU VAL LEU PHE PRO SEQRES 7 D 151 GLN SER ASP ARG PHE GLN PRO TYR MET GLN GLU VAL VAL SEQRES 8 D 151 PRO PHE LEU ALA ARG LEU SER ASN ARG LEU SER THR CYS SEQRES 9 D 151 HIS ILE GLU GLY ASP ASP LEU HIS ILE GLN ARG ASN VAL SEQRES 10 D 151 GLN LYS LEU LYS ASP THR VAL LYS LYS LEU GLY GLU SER SEQRES 11 D 151 GLY GLU ILE LYS ALA ILE GLY GLU LEU ASP LEU LEU PHE SEQRES 12 D 151 MET SER LEU ARG ASN ALA CYS ILE FORMUL 5 HOH *167(H2 O) HELIX 1 1 THR A 89 SER A 93 5 5 HELIX 2 2 THR A 121 THR A 126 1 6 HELIX 3 3 LEU A 151 GLN A 156 5 6 HELIX 4 4 SER A 162 TYR A 167 1 6 HELIX 5 5 ASP B 43 GLN B 48 5 6 HELIX 6 6 GLN B 49 ALA B 66 1 18 HELIX 7 7 GLY B 76 HIS B 81 1 6 HELIX 8 8 GLU B 87 VAL B 103 1 17 HELIX 9 9 PRO B 113 LEU B 129 1 17 HELIX 10 10 ILE B 141 LEU B 155 1 15 HELIX 11 11 LEU B 155 GLU B 166 1 12 HELIX 12 12 GLU B 166 CYS B 178 1 13 HELIX 13 13 THR C 89 SER C 93 5 5 HELIX 14 14 THR C 121 THR C 126 1 6 HELIX 15 15 LEU C 151 GLN C 156 5 6 HELIX 16 16 SER C 162 TYR C 167 1 6 HELIX 17 17 ASP D 43 GLN D 48 5 6 HELIX 18 18 GLN D 49 ALA D 66 1 18 HELIX 19 19 GLY D 76 HIS D 81 1 6 HELIX 20 20 GLU D 87 VAL D 103 1 17 HELIX 21 21 PRO D 113 LEU D 129 1 17 HELIX 22 22 ILE D 141 LEU D 155 1 15 HELIX 23 23 LEU D 155 GLU D 166 1 12 HELIX 24 24 GLU D 166 CYS D 178 1 13 SHEET 1 A 3 GLN A 32 ARG A 39 0 SHEET 2 A 3 HIS A 42 GLN A 48 -1 O GLN A 48 N GLN A 32 SHEET 3 A 3 SER A 85 ASP A 87 -1 O CYS A 86 N LEU A 45 SHEET 1 B 4 LYS A 73 THR A 81 0 SHEET 2 B 4 VAL A 59 ILE A 66 -1 N TYR A 60 O GLY A 80 SHEET 3 B 4 TYR A 99 SER A 107 -1 O ARG A 102 N GLN A 63 SHEET 4 B 4 SER A 110 TYR A 111 -1 O SER A 110 N SER A 107 SHEET 1 C 4 LYS A 73 THR A 81 0 SHEET 2 C 4 VAL A 59 ILE A 66 -1 N TYR A 60 O GLY A 80 SHEET 3 C 4 TYR A 99 SER A 107 -1 O ARG A 102 N GLN A 63 SHEET 4 C 4 SER A 115 MET A 116 -1 O SER A 115 N VAL A 103 SHEET 1 D 2 VAL A 132 ASN A 134 0 SHEET 2 D 2 ILE A 145 HIS A 147 -1 O ILE A 145 N ASN A 134 SHEET 1 E 4 GLN A 184 GLY A 189 0 SHEET 2 E 4 LEU A 170 ILE A 175 -1 N TYR A 171 O GLY A 189 SHEET 3 E 4 VAL A 207 GLN A 213 -1 O VAL A 208 N PHE A 174 SHEET 4 E 4 ARG A 218 ARG A 219 -1 O ARG A 218 N GLN A 213 SHEET 1 F 3 GLN C 32 ARG C 39 0 SHEET 2 F 3 HIS C 42 GLN C 48 -1 O GLN C 48 N GLN C 32 SHEET 3 F 3 SER C 85 ASP C 87 -1 O CYS C 86 N LEU C 45 SHEET 1 G 4 LYS C 73 THR C 81 0 SHEET 2 G 4 VAL C 59 ILE C 66 -1 N TYR C 60 O GLY C 80 SHEET 3 G 4 TYR C 99 SER C 107 -1 O ARG C 102 N GLN C 63 SHEET 4 G 4 SER C 110 TYR C 111 -1 O SER C 110 N SER C 107 SHEET 1 H 4 LYS C 73 THR C 81 0 SHEET 2 H 4 VAL C 59 ILE C 66 -1 N TYR C 60 O GLY C 80 SHEET 3 H 4 TYR C 99 SER C 107 -1 O ARG C 102 N GLN C 63 SHEET 4 H 4 SER C 115 MET C 116 -1 O SER C 115 N VAL C 103 SHEET 1 I 2 VAL C 132 ASN C 134 0 SHEET 2 I 2 ILE C 145 HIS C 147 -1 O ILE C 145 N ASN C 134 SHEET 1 J 3 GLN C 184 GLY C 189 0 SHEET 2 J 3 LEU C 170 ILE C 175 -1 N TYR C 171 O GLY C 189 SHEET 3 J 3 VAL C 207 TYR C 212 -1 O VAL C 208 N PHE C 174 SSBOND 1 CYS A 78 CYS A 86 1555 1555 2.05 SSBOND 2 CYS B 89 CYS B 178 1555 1555 2.04 SSBOND 3 CYS C 78 CYS C 86 1555 1555 2.06 SSBOND 4 CYS D 89 CYS D 178 1555 1555 2.03 CISPEP 1 GLN B 112 PRO B 113 0 5.03 CISPEP 2 GLN D 112 PRO D 113 0 4.70 CRYST1 67.948 67.948 172.533 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005796 0.00000