HEADER CYTOKINE 17-FEB-09 3GAC TITLE STRUCTURE OF MIF WITH HPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM YOELII YOELII; SOURCE 3 ORGANISM_TAXID: 73239; SOURCE 4 GENE: MIF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS MACROPHAGE MIGRATION INHIBITORY FACTOR, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-F.ZHOU,X.-D.SU,D.SHAO,H.WANG REVDAT 3 01-NOV-23 3GAC 1 REMARK SEQADV REVDAT 2 12-JAN-10 3GAC 1 JRNL REVDAT 1 29-DEC-09 3GAC 0 JRNL AUTH D.SHAO,X.ZHONG,Y.-F.ZHOU,Z.HAN,Y.LIN,Z.WANG,L.BU,L.ZHANG, JRNL AUTH 2 X.-D.SU,H.WANG JRNL TITL STRUCTURAL AND FUNCTIONAL COMPARISON OF MIF ORTHOLOG FROM JRNL TITL 2 PLASMODIUM YOELII WITH MIF FROM ITS RODENT HOST JRNL REF MOL.IMMUNOL. V. 47 726 2010 JRNL REFN ISSN 0161-5890 JRNL PMID 20004020 JRNL DOI 10.1016/J.MOLIMM.2009.10.037 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 58009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.421 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5796 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7876 ; 0.956 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 771 ; 4.551 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;35.431 ;24.752 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1022 ;13.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;16.335 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 860 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4464 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2744 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3948 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 748 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 50 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3747 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5838 ; 1.030 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2320 ; 1.493 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2002 ; 2.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9023 12.5421 46.7412 REMARK 3 T TENSOR REMARK 3 T11: -0.0081 T22: -0.0296 REMARK 3 T33: -0.0041 T12: 0.0035 REMARK 3 T13: 0.0137 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.9981 L22: 0.3356 REMARK 3 L33: 1.5296 L12: 0.7505 REMARK 3 L13: 0.0028 L23: 0.2876 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0073 S13: 0.0013 REMARK 3 S21: -0.0104 S22: 0.0330 S23: 0.0305 REMARK 3 S31: 0.0709 S32: 0.0359 S33: -0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4085 10.9849 52.8083 REMARK 3 T TENSOR REMARK 3 T11: -0.0132 T22: -0.0322 REMARK 3 T33: -0.0445 T12: 0.0271 REMARK 3 T13: -0.0125 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.7596 L22: 1.0838 REMARK 3 L33: 0.9721 L12: 1.2908 REMARK 3 L13: -0.6683 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.0004 S13: -0.0030 REMARK 3 S21: -0.0842 S22: 0.0274 S23: 0.0301 REMARK 3 S31: -0.0087 S32: 0.0748 S33: 0.0273 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7614 14.7386 58.4651 REMARK 3 T TENSOR REMARK 3 T11: -0.0142 T22: 0.0056 REMARK 3 T33: -0.0097 T12: 0.0074 REMARK 3 T13: 0.0131 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.5809 L22: 0.4280 REMARK 3 L33: 1.1986 L12: 0.4648 REMARK 3 L13: 0.8369 L23: 0.3709 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.1404 S13: 0.0420 REMARK 3 S21: 0.0491 S22: -0.0251 S23: -0.0017 REMARK 3 S31: -0.0118 S32: -0.0555 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6088 4.0452 59.5956 REMARK 3 T TENSOR REMARK 3 T11: 0.0023 T22: -0.0719 REMARK 3 T33: 0.0243 T12: -0.0096 REMARK 3 T13: -0.0074 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 6.6427 L22: 2.9870 REMARK 3 L33: 9.8940 L12: -1.9768 REMARK 3 L13: -4.9425 L23: 5.3324 REMARK 3 S TENSOR REMARK 3 S11: 0.0975 S12: -0.0634 S13: 0.2808 REMARK 3 S21: -0.0498 S22: 0.0336 S23: -0.1600 REMARK 3 S31: -0.4415 S32: 0.0913 S33: -0.1311 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0344 -5.3748 58.2753 REMARK 3 T TENSOR REMARK 3 T11: -0.0167 T22: -0.0225 REMARK 3 T33: -0.0095 T12: -0.0056 REMARK 3 T13: 0.0029 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4611 L22: 0.4091 REMARK 3 L33: 0.4759 L12: -0.3246 REMARK 3 L13: 0.0425 L23: 0.0361 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0250 S13: 0.0369 REMARK 3 S21: -0.0087 S22: -0.0149 S23: -0.0136 REMARK 3 S31: -0.0550 S32: 0.0009 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9583 -12.7276 65.0265 REMARK 3 T TENSOR REMARK 3 T11: -0.0199 T22: -0.0247 REMARK 3 T33: -0.0149 T12: 0.0071 REMARK 3 T13: 0.0135 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.9587 L22: 1.6990 REMARK 3 L33: 7.3685 L12: 1.1077 REMARK 3 L13: 1.6259 L23: 3.2687 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.1170 S13: -0.0596 REMARK 3 S21: 0.1349 S22: -0.1140 S23: -0.0211 REMARK 3 S31: 0.2459 S32: -0.3650 S33: 0.0633 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8871 -7.7800 64.8135 REMARK 3 T TENSOR REMARK 3 T11: -0.0107 T22: -0.0038 REMARK 3 T33: -0.0377 T12: -0.0011 REMARK 3 T13: 0.0017 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.4689 L22: 6.4936 REMARK 3 L33: 1.4399 L12: -1.0325 REMARK 3 L13: -0.3507 L23: 3.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.0093 S13: 0.0309 REMARK 3 S21: -0.0177 S22: 0.1347 S23: -0.2950 REMARK 3 S31: -0.0684 S32: 0.0659 S33: -0.1038 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4129 14.7212 66.5948 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: 0.0449 REMARK 3 T33: -0.0595 T12: -0.0184 REMARK 3 T13: 0.0247 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.0693 L22: 5.9327 REMARK 3 L33: 6.4441 L12: -2.8372 REMARK 3 L13: 1.0878 L23: -2.9629 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: 0.0564 S13: 0.1436 REMARK 3 S21: 0.1211 S22: -0.1086 S23: 0.0098 REMARK 3 S31: 0.0508 S32: -0.3336 S33: 0.0472 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 33 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4262 -10.0223 49.1744 REMARK 3 T TENSOR REMARK 3 T11: -0.0225 T22: -0.0248 REMARK 3 T33: -0.0120 T12: -0.0073 REMARK 3 T13: 0.0146 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.7929 L22: 1.1402 REMARK 3 L33: 2.2371 L12: -0.0486 REMARK 3 L13: 0.8056 L23: -1.1738 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0869 S13: -0.0539 REMARK 3 S21: -0.0418 S22: 0.0115 S23: -0.0081 REMARK 3 S31: 0.0622 S32: 0.0404 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 34 C 56 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8736 -2.0883 49.1303 REMARK 3 T TENSOR REMARK 3 T11: -0.0223 T22: -0.0114 REMARK 3 T33: -0.0223 T12: -0.0048 REMARK 3 T13: 0.0030 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1316 L22: 3.0978 REMARK 3 L33: 0.6947 L12: -0.2395 REMARK 3 L13: 0.1274 L23: -1.3165 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.0107 S13: 0.0024 REMARK 3 S21: -0.0786 S22: 0.0319 S23: 0.0978 REMARK 3 S31: 0.0149 S32: 0.0076 S33: -0.0371 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 57 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9263 -2.5966 54.0075 REMARK 3 T TENSOR REMARK 3 T11: -0.0308 T22: -0.0446 REMARK 3 T33: -0.0101 T12: -0.0106 REMARK 3 T13: -0.0093 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4783 L22: 0.8320 REMARK 3 L33: 3.7292 L12: -0.0726 REMARK 3 L13: 0.1301 L23: -1.2277 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0399 S13: 0.0471 REMARK 3 S21: 0.0559 S22: -0.0083 S23: -0.0187 REMARK 3 S31: -0.0340 S32: 0.0612 S33: 0.0256 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 102 C 118 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9529 -12.2944 70.7920 REMARK 3 T TENSOR REMARK 3 T11: -0.0376 T22: -0.0078 REMARK 3 T33: -0.0618 T12: 0.0078 REMARK 3 T13: -0.0080 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.7630 L22: 1.6684 REMARK 3 L33: 2.0316 L12: -0.4564 REMARK 3 L13: -2.1113 L23: -0.9128 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: -0.3332 S13: -0.0075 REMARK 3 S21: -0.0326 S22: -0.0336 S23: 0.1249 REMARK 3 S31: -0.1616 S32: 0.1465 S33: 0.1719 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 37 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7001 -26.7967 13.0363 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.0140 REMARK 3 T33: -0.0127 T12: 0.0118 REMARK 3 T13: -0.0088 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.3832 L22: 1.1588 REMARK 3 L33: 0.0259 L12: 0.4896 REMARK 3 L13: -0.1888 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.0152 S13: 0.0163 REMARK 3 S21: 0.0056 S22: 0.0421 S23: -0.0719 REMARK 3 S31: 0.0022 S32: -0.0140 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 38 D 57 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8521 -25.4313 21.7103 REMARK 3 T TENSOR REMARK 3 T11: -0.0150 T22: -0.0375 REMARK 3 T33: -0.0525 T12: -0.0095 REMARK 3 T13: -0.0234 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 3.0275 L22: 1.3778 REMARK 3 L33: 1.3453 L12: -0.5543 REMARK 3 L13: -0.8489 L23: -0.2690 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: -0.0412 S13: -0.1190 REMARK 3 S21: 0.0422 S22: 0.0770 S23: 0.0511 REMARK 3 S31: 0.0532 S32: -0.0382 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 58 D 102 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7600 -17.4097 13.4391 REMARK 3 T TENSOR REMARK 3 T11: -0.0213 T22: -0.0251 REMARK 3 T33: -0.0215 T12: 0.0218 REMARK 3 T13: -0.0133 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.6043 L22: 1.3272 REMARK 3 L33: 0.6062 L12: 0.9623 REMARK 3 L13: -0.1566 L23: -0.1386 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0490 S13: 0.1166 REMARK 3 S21: -0.0337 S22: 0.0175 S23: 0.0139 REMARK 3 S31: -0.0049 S32: 0.0081 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 103 D 116 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6549 -17.2742 24.1291 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.0213 REMARK 3 T33: -0.0608 T12: -0.0105 REMARK 3 T13: -0.0036 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 6.9999 L22: 11.6953 REMARK 3 L33: 1.7951 L12: -5.5139 REMARK 3 L13: 1.4345 L23: -4.4521 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: 0.2062 S13: 0.1129 REMARK 3 S21: -0.4778 S22: -0.0950 S23: -0.2046 REMARK 3 S31: -0.0245 S32: 0.2001 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 69 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1097 -19.8778 33.8737 REMARK 3 T TENSOR REMARK 3 T11: -0.0165 T22: -0.0102 REMARK 3 T33: -0.0152 T12: -0.0046 REMARK 3 T13: 0.0009 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.1450 L22: 0.3390 REMARK 3 L33: 0.4716 L12: -0.0341 REMARK 3 L13: 0.1693 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.0022 S13: -0.0163 REMARK 3 S21: -0.0070 S22: 0.0027 S23: -0.0002 REMARK 3 S31: 0.0034 S32: -0.0226 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 70 E 86 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0266 -9.2467 40.0667 REMARK 3 T TENSOR REMARK 3 T11: -0.0343 T22: -0.0041 REMARK 3 T33: -0.0260 T12: 0.0149 REMARK 3 T13: -0.0008 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.9686 L22: 11.9921 REMARK 3 L33: 3.4981 L12: 4.4616 REMARK 3 L13: -2.0615 L23: -5.4163 REMARK 3 S TENSOR REMARK 3 S11: 0.1890 S12: -0.1558 S13: 0.1738 REMARK 3 S21: 0.3884 S22: -0.0706 S23: 0.3834 REMARK 3 S31: -0.2255 S32: -0.0604 S33: -0.1184 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 87 E 99 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6892 -19.3126 44.0191 REMARK 3 T TENSOR REMARK 3 T11: -0.0243 T22: -0.0399 REMARK 3 T33: -0.0270 T12: 0.0161 REMARK 3 T13: -0.0094 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.4641 L22: 1.8190 REMARK 3 L33: 1.1394 L12: 0.7154 REMARK 3 L13: -0.0321 L23: -0.2581 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0723 S13: 0.0412 REMARK 3 S21: 0.1298 S22: 0.0045 S23: -0.0063 REMARK 3 S31: -0.0637 S32: -0.0054 S33: -0.0436 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 100 E 116 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3095 -8.9038 18.7290 REMARK 3 T TENSOR REMARK 3 T11: -0.0312 T22: -0.0747 REMARK 3 T33: -0.0163 T12: 0.0321 REMARK 3 T13: -0.0025 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.8090 L22: 0.5573 REMARK 3 L33: 10.0892 L12: 0.1146 REMARK 3 L13: 1.1536 L23: 0.0768 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.1617 S13: 0.0963 REMARK 3 S21: 0.0043 S22: -0.0101 S23: 0.0159 REMARK 3 S31: -0.3181 S32: 0.3038 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 70 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7146 -26.6984 33.4758 REMARK 3 T TENSOR REMARK 3 T11: -0.0027 T22: -0.0200 REMARK 3 T33: -0.0061 T12: 0.0064 REMARK 3 T13: -0.0017 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.3331 L22: 0.3030 REMARK 3 L33: 0.9364 L12: 0.1949 REMARK 3 L13: 0.1331 L23: 0.4865 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0300 S13: -0.0375 REMARK 3 S21: 0.0243 S22: -0.0162 S23: 0.0151 REMARK 3 S31: 0.0660 S32: -0.0218 S33: 0.0124 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 71 F 92 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5943 -25.8299 32.6546 REMARK 3 T TENSOR REMARK 3 T11: -0.0434 T22: -0.0040 REMARK 3 T33: -0.0224 T12: 0.0040 REMARK 3 T13: 0.0082 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.0508 L22: 11.5057 REMARK 3 L33: 1.0758 L12: 1.6509 REMARK 3 L13: 0.9061 L23: 1.7900 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.0416 S13: -0.1196 REMARK 3 S21: 0.1409 S22: 0.0073 S23: -0.5003 REMARK 3 S31: 0.0556 S32: 0.1448 S33: -0.0562 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 93 F 106 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0270 -18.7168 28.4399 REMARK 3 T TENSOR REMARK 3 T11: -0.0203 T22: -0.0166 REMARK 3 T33: -0.0127 T12: -0.0146 REMARK 3 T13: -0.0122 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.1374 L22: 3.8643 REMARK 3 L33: 3.4305 L12: -1.6066 REMARK 3 L13: -1.8957 L23: 3.3351 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: 0.1036 S13: 0.0590 REMARK 3 S21: -0.4142 S22: -0.0807 S23: -0.0736 REMARK 3 S31: -0.2921 S32: -0.0576 S33: -0.1000 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 107 F 117 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6631 -9.1120 43.0028 REMARK 3 T TENSOR REMARK 3 T11: -0.0089 T22: -0.0511 REMARK 3 T33: -0.0376 T12: -0.0001 REMARK 3 T13: 0.0009 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.8588 L22: 2.8661 REMARK 3 L33: 2.6037 L12: 0.5799 REMARK 3 L13: 0.1197 L23: -2.5331 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.1321 S13: 0.1178 REMARK 3 S21: 0.1848 S22: -0.1037 S23: 0.0197 REMARK 3 S31: -0.0774 S32: -0.1056 S33: 0.0397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 72.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3GAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH4.6, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 117 REMARK 465 GLU A 118 REMARK 465 GLU B 118 REMARK 465 LEU D 117 REMARK 465 GLU D 118 REMARK 465 LEU E 117 REMARK 465 GLU E 118 REMARK 465 GLU F 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 125 O HOH F 993 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 691 O HOH F 122 3555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 118 CA GLU C 118 C 0.316 REMARK 500 GLU C 118 C GLU C 118 O 0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C 118 CA - C - O ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG D 94 0.45 -69.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY E 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENO E 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY F 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GAD RELATED DB: PDB REMARK 900 MIF, APO-FORM DBREF 3GAC A 2 116 UNP Q1HEA2 Q1HEA2_PLAYO 2 116 DBREF 3GAC B 2 116 UNP Q1HEA2 Q1HEA2_PLAYO 2 116 DBREF 3GAC C 2 116 UNP Q1HEA2 Q1HEA2_PLAYO 2 116 DBREF 3GAC D 2 116 UNP Q1HEA2 Q1HEA2_PLAYO 2 116 DBREF 3GAC E 2 116 UNP Q1HEA2 Q1HEA2_PLAYO 2 116 DBREF 3GAC F 2 116 UNP Q1HEA2 Q1HEA2_PLAYO 2 116 SEQADV 3GAC LEU A 117 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC GLU A 118 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC LEU B 117 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC GLU B 118 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC LEU C 117 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC GLU C 118 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC LEU D 117 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC GLU D 118 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC LEU E 117 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC GLU E 118 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC LEU F 117 UNP Q1HEA2 EXPRESSION TAG SEQADV 3GAC GLU F 118 UNP Q1HEA2 EXPRESSION TAG SEQRES 1 A 117 PRO CYS CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 A 117 ASP LYS ALA GLN ASN ALA LEU SER GLU ILE GLU ASP ALA SEQRES 3 A 117 ILE SER ASN VAL LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 A 117 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 A 117 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 A 117 GLY GLY ILE ASN ARG SER ASN ASN SER SER LEU ALA ASP SEQRES 7 A 117 LYS ILE THR LYS ILE LEU SER ASN HIS LEU GLY VAL LYS SEQRES 8 A 117 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 A 117 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY LEU GLU SEQRES 1 B 117 PRO CYS CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 B 117 ASP LYS ALA GLN ASN ALA LEU SER GLU ILE GLU ASP ALA SEQRES 3 B 117 ILE SER ASN VAL LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 B 117 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 B 117 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 B 117 GLY GLY ILE ASN ARG SER ASN ASN SER SER LEU ALA ASP SEQRES 7 B 117 LYS ILE THR LYS ILE LEU SER ASN HIS LEU GLY VAL LYS SEQRES 8 B 117 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 B 117 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY LEU GLU SEQRES 1 C 117 PRO CYS CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 C 117 ASP LYS ALA GLN ASN ALA LEU SER GLU ILE GLU ASP ALA SEQRES 3 C 117 ILE SER ASN VAL LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 C 117 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 C 117 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 C 117 GLY GLY ILE ASN ARG SER ASN ASN SER SER LEU ALA ASP SEQRES 7 C 117 LYS ILE THR LYS ILE LEU SER ASN HIS LEU GLY VAL LYS SEQRES 8 C 117 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 C 117 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY LEU GLU SEQRES 1 D 117 PRO CYS CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 D 117 ASP LYS ALA GLN ASN ALA LEU SER GLU ILE GLU ASP ALA SEQRES 3 D 117 ILE SER ASN VAL LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 D 117 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 D 117 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 D 117 GLY GLY ILE ASN ARG SER ASN ASN SER SER LEU ALA ASP SEQRES 7 D 117 LYS ILE THR LYS ILE LEU SER ASN HIS LEU GLY VAL LYS SEQRES 8 D 117 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 D 117 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY LEU GLU SEQRES 1 E 117 PRO CYS CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 E 117 ASP LYS ALA GLN ASN ALA LEU SER GLU ILE GLU ASP ALA SEQRES 3 E 117 ILE SER ASN VAL LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 E 117 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 E 117 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 E 117 GLY GLY ILE ASN ARG SER ASN ASN SER SER LEU ALA ASP SEQRES 7 E 117 LYS ILE THR LYS ILE LEU SER ASN HIS LEU GLY VAL LYS SEQRES 8 E 117 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 E 117 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY LEU GLU SEQRES 1 F 117 PRO CYS CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 F 117 ASP LYS ALA GLN ASN ALA LEU SER GLU ILE GLU ASP ALA SEQRES 3 F 117 ILE SER ASN VAL LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 F 117 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 F 117 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 F 117 GLY GLY ILE ASN ARG SER ASN ASN SER SER LEU ALA ASP SEQRES 7 F 117 LYS ILE THR LYS ILE LEU SER ASN HIS LEU GLY VAL LYS SEQRES 8 F 117 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 F 117 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY LEU GLU HET SO4 A 119 5 HET SO4 C 119 5 HET ACY C 1 4 HET SO4 E 119 5 HET SO4 E 120 5 HET SO4 E 1 5 HET ACY E 121 4 HET ENO E 122 13 HET SO4 F 119 5 HET ACY F 1 4 HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID HETNAM ENO 3-(4-HYDROXY-PHENYL)PYRUVIC ACID HETSYN ENO HPP FORMUL 7 SO4 6(O4 S 2-) FORMUL 9 ACY 3(C2 H4 O2) FORMUL 14 ENO C9 H8 O4 FORMUL 17 HOH *788(H2 O) HELIX 1 1 PRO A 13 GLY A 33 1 21 HELIX 2 2 PRO A 35 TYR A 38 5 4 HELIX 3 3 ASN A 70 GLY A 90 1 21 HELIX 4 4 LYS A 92 ARG A 94 5 3 HELIX 5 5 SER A 104 GLN A 106 5 3 HELIX 6 6 PRO B 13 GLY B 33 1 21 HELIX 7 7 PRO B 35 TYR B 38 5 4 HELIX 8 8 ASN B 70 GLY B 90 1 21 HELIX 9 9 LYS B 92 ARG B 94 5 3 HELIX 10 10 SER B 104 GLN B 106 5 3 HELIX 11 11 PRO C 13 GLY C 33 1 21 HELIX 12 12 PRO C 35 TYR C 38 5 4 HELIX 13 13 ASN C 70 GLY C 90 1 21 HELIX 14 14 LYS C 92 ARG C 94 5 3 HELIX 15 15 SER C 104 GLN C 106 5 3 HELIX 16 16 PRO D 13 GLY D 33 1 21 HELIX 17 17 PRO D 35 TYR D 38 5 4 HELIX 18 18 ASN D 70 GLY D 90 1 21 HELIX 19 19 LYS D 92 ARG D 94 5 3 HELIX 20 20 SER D 104 GLN D 106 5 3 HELIX 21 21 PRO E 13 GLY E 33 1 21 HELIX 22 22 PRO E 35 TYR E 38 5 4 HELIX 23 23 ASN E 70 GLY E 90 1 21 HELIX 24 24 LYS E 92 ARG E 94 5 3 HELIX 25 25 SER E 104 GLN E 106 5 3 HELIX 26 26 PRO F 13 GLY F 33 1 21 HELIX 27 27 PRO F 35 TYR F 38 5 4 HELIX 28 28 ASN F 70 GLY F 90 1 21 HELIX 29 29 LYS F 92 ARG F 94 5 3 HELIX 30 30 SER F 104 GLN F 106 5 3 SHEET 1 A 7 SER B 113 LEU B 114 0 SHEET 2 A 7 PHE B 108 PHE B 110 -1 N PHE B 110 O SER B 113 SHEET 3 A 7 VAL A 96 ASP A 102 -1 N ILE A 98 O ALA B 109 SHEET 4 A 7 CYS A 59 SER A 65 1 N LEU A 63 O GLU A 99 SHEET 5 A 7 CYS A 3 THR A 8 -1 N ILE A 7 O PHE A 60 SHEET 6 A 7 MET A 40 TYR A 45 1 O ASP A 44 N LEU A 6 SHEET 7 A 7 ARG C 50 PHE C 51 -1 O ARG C 50 N SER A 41 SHEET 1 B 7 ARG A 50 PHE A 51 0 SHEET 2 B 7 MET B 40 TYR B 45 -1 O SER B 41 N ARG A 50 SHEET 3 B 7 CYS B 3 THR B 8 1 N LEU B 6 O ASP B 44 SHEET 4 B 7 CYS B 59 SER B 65 -1 O PHE B 60 N ILE B 7 SHEET 5 B 7 VAL B 96 ASP B 102 1 O GLU B 99 N VAL B 61 SHEET 6 B 7 PHE C 108 PHE C 110 -1 O ALA C 109 N ILE B 98 SHEET 7 B 7 SER C 113 LEU C 114 -1 O SER C 113 N PHE C 110 SHEET 1 C 7 SER A 113 LEU A 114 0 SHEET 2 C 7 PHE A 108 PHE A 110 -1 N PHE A 110 O SER A 113 SHEET 3 C 7 VAL C 96 ASP C 102 -1 O ILE C 98 N ALA A 109 SHEET 4 C 7 CYS C 59 SER C 65 1 N VAL C 61 O GLU C 99 SHEET 5 C 7 CYS C 3 THR C 8 -1 N ILE C 7 O PHE C 60 SHEET 6 C 7 MET C 40 TYR C 45 1 O ASP C 44 N LEU C 6 SHEET 7 C 7 ARG B 50 PHE B 51 -1 N ARG B 50 O SER C 41 SHEET 1 D 7 SER E 113 LEU E 114 0 SHEET 2 D 7 PHE E 108 PHE E 110 -1 N PHE E 110 O SER E 113 SHEET 3 D 7 VAL D 96 ASP D 102 -1 N ILE D 98 O ALA E 109 SHEET 4 D 7 CYS D 59 SER D 65 1 N VAL D 61 O GLU D 99 SHEET 5 D 7 CYS D 3 THR D 8 -1 N ILE D 7 O PHE D 60 SHEET 6 D 7 MET D 40 TYR D 45 1 O ASP D 44 N LEU D 6 SHEET 7 D 7 ARG F 50 PHE F 51 -1 O ARG F 50 N SER D 41 SHEET 1 E 7 ARG D 50 PHE D 51 0 SHEET 2 E 7 MET E 40 TYR E 45 -1 O SER E 41 N ARG D 50 SHEET 3 E 7 CYS E 3 THR E 8 1 N LEU E 6 O ASP E 44 SHEET 4 E 7 CYS E 59 SER E 65 -1 O PHE E 60 N ILE E 7 SHEET 5 E 7 VAL E 96 ASP E 102 1 O GLU E 99 N VAL E 61 SHEET 6 E 7 PHE F 108 PHE F 110 -1 O ALA F 109 N ILE E 98 SHEET 7 E 7 SER F 113 LEU F 114 -1 O SER F 113 N PHE F 110 SHEET 1 F 7 SER D 113 LEU D 114 0 SHEET 2 F 7 PHE D 108 PHE D 110 -1 N PHE D 110 O SER D 113 SHEET 3 F 7 VAL F 96 ASP F 102 -1 O ILE F 98 N ALA D 109 SHEET 4 F 7 CYS F 59 SER F 65 1 N VAL F 61 O GLU F 99 SHEET 5 F 7 CYS F 3 THR F 8 -1 N ILE F 7 O PHE F 60 SHEET 6 F 7 MET F 40 TYR F 45 1 O ASP F 44 N LEU F 6 SHEET 7 F 7 ARG E 50 PHE E 51 -1 N ARG E 50 O SER F 41 SITE 1 AC1 4 PRO A 13 HOH A 696 LYS F 92 ARG F 94 SITE 1 AC2 3 LYS C 92 ARG C 94 PRO D 13 SITE 1 AC3 5 ASN C 30 SER E 54 ASN E 55 GLU E 56 SITE 2 AC3 5 HOH E 531 SITE 1 AC4 6 TYR C 38 PHE C 110 HOH C 138 SO4 E 1 SITE 2 AC4 6 LYS E 16 HOH E 223 SITE 1 AC5 6 GLY E 68 ASN E 70 ASN E 73 HOH E 145 SITE 2 AC5 6 HOH E 415 HOH E 576 SITE 1 AC6 8 ARG B 94 ACY C 1 LYS E 16 ASN E 19 SITE 2 AC6 8 HOH E 147 HOH E 221 HOH E 226 HOH E 629 SITE 1 AC7 5 GLY E 67 GLY E 68 HOH E 142 HOH E 530 SITE 2 AC7 5 HOH E 987 SITE 1 AC8 8 SER B 29 PRO B 35 HOH B 491 LYS E 34 SITE 2 AC8 8 HOH E 133 HOH E 216 HOH E 552 HOH E 808 SITE 1 AC9 5 GLN D 106 ASN F 70 ARG F 71 HOH F 135 SITE 2 AC9 5 HOH F 976 SITE 1 BC1 6 ARG E 94 ALA F 37 TYR F 38 PHE F 110 SITE 2 BC1 6 HOH F 149 HOH F 339 CRYST1 95.500 99.530 106.600 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009381 0.00000