HEADER LYASE 17-FEB-09 3GAK TITLE STRUCTURE OF GIARDIA FRUCTOSE-1,6-BIPHOSPHATE ALDOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA INTESTINALIS; SOURCE 3 ORGANISM_TAXID: 5741; SOURCE 4 STRAIN: WB; SOURCE 5 GENE: ALD, FBPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET100/D-TOPO KEYWDS CLASS II FRUCTOSE-1, 6-BISPHOSPHATE ALDOLASE, GLYCOLYTIC PATHWAY, KEYWDS 2 GIARDIA LAMBLIA, DRUG TARGET, GLYCOLYSIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GALKIN,O.HERZBERG REVDAT 3 06-SEP-23 3GAK 1 REMARK REVDAT 2 09-JUN-10 3GAK 1 JRNL REVDAT 1 31-MAR-09 3GAK 0 JRNL AUTH A.GALKIN,Z.LI,L.LI,L.KULAKOVA,L.R.PAL,D.DUNAWAY-MARIANO, JRNL AUTH 2 O.HERZBERG JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE BINDING AND JRNL TITL 2 STEREOSELECTIVITY OF GIARDIA FRUCTOSE-1,6-BISPHOSPHATE JRNL TITL 3 ALDOLASE. JRNL REF BIOCHEMISTRY V. 48 3186 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19236002 JRNL DOI 10.1021/BI9001166 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 12210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ISW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-25% PEG3350, 0.2M MGSO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.19667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 212.39333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 159.29500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 265.49167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.09833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 138 REMARK 465 LEU A 139 REMARK 465 GLY A 140 REMARK 465 GLY A 141 REMARK 465 ILE A 142 REMARK 465 GLU A 143 REMARK 465 GLU A 144 REMARK 465 ASP A 145 REMARK 465 VAL A 146 REMARK 465 GLN A 147 REMARK 465 ASN A 148 REMARK 465 THR A 149 REMARK 465 VAL A 150 REMARK 465 GLN A 151 REMARK 465 LEU A 152 REMARK 465 GLY A 175 REMARK 465 THR A 176 REMARK 465 SER A 177 REMARK 465 HIS A 178 REMARK 465 GLY A 179 REMARK 465 ALA A 180 REMARK 465 TYR A 181 REMARK 465 LYS A 182 REMARK 465 PHE A 183 REMARK 465 LYS A 184 REMARK 465 SER A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 ASP A 188 REMARK 465 ILE A 189 REMARK 465 ARG A 190 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 THR B 138 REMARK 465 LEU B 139 REMARK 465 GLY B 140 REMARK 465 GLY B 141 REMARK 465 ILE B 142 REMARK 465 GLU B 143 REMARK 465 GLU B 144 REMARK 465 ASP B 145 REMARK 465 VAL B 146 REMARK 465 GLN B 147 REMARK 465 ASN B 148 REMARK 465 THR B 149 REMARK 465 VAL B 150 REMARK 465 GLN B 151 REMARK 465 LEU B 152 REMARK 465 SER B 187 REMARK 465 ASP B 188 REMARK 465 ILE B 189 REMARK 465 ARG B 190 REMARK 465 LYS B 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 155 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO A 231 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 59 -51.66 81.63 REMARK 500 ASP A 86 -51.52 -144.41 REMARK 500 PHE A 111 -39.95 -37.87 REMARK 500 LYS A 217 -34.94 -39.64 REMARK 500 ILE A 223 -74.26 -70.82 REMARK 500 LYS A 229 66.63 -164.43 REMARK 500 ASP A 232 -99.41 -106.52 REMARK 500 VAL A 234 75.46 52.01 REMARK 500 ASN A 253 100.20 -58.01 REMARK 500 ASP A 255 -72.88 -122.64 REMARK 500 MET A 260 -71.53 -54.47 REMARK 500 ALA A 261 -53.58 -22.77 REMARK 500 THR A 263 -3.06 -56.49 REMARK 500 PHE A 277 -4.28 -144.01 REMARK 500 LYS A 299 -62.00 -29.30 REMARK 500 ALA A 304 112.20 -39.80 REMARK 500 ASN B 27 -166.20 -161.12 REMARK 500 ASP B 58 45.68 38.02 REMARK 500 MET B 59 -60.43 59.62 REMARK 500 PHE B 111 -57.87 -23.03 REMARK 500 VAL B 167 156.17 -44.03 REMARK 500 VAL B 215 61.35 30.49 REMARK 500 PRO B 216 153.51 -37.99 REMARK 500 MET B 230 55.80 -142.96 REMARK 500 ASP B 232 -90.10 -95.89 REMARK 500 ASP B 255 -57.56 -130.22 REMARK 500 HIS B 273 72.87 -158.08 REMARK 500 PRO B 274 1.85 -66.49 REMARK 500 PHE B 277 -9.97 -144.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 233 VAL A 234 128.29 REMARK 500 PRO B 216 LYS B 217 -149.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 331 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 135 OE2 REMARK 620 2 HIS A 210 ND1 129.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 332 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 84 NE2 REMARK 620 2 HIS B 210 ND1 128.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 330 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ISV RELATED DB: PDB REMARK 900 STRUCTURE OF GIARDIA FRUCTOSE-1,6-BIPHOSPHATE ALDOLASE IN COMPLEX REMARK 900 WITH PHOSPHOGLYCOLOHYDROXAMATE REMARK 900 RELATED ID: 2ISW RELATED DB: PDB REMARK 900 STRUCTURE OF GIARDIA FRUCTOSE-1,6-BIPHOSPHATE ALDOLASE IN COMPLEX REMARK 900 WITH PHOSPHOGLYCOLOHYDROXAMATE REMARK 900 RELATED ID: 3GAY RELATED DB: PDB REMARK 900 RELATED ID: 3GB6 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT ACCORDING TO THE SEQUENCE FROM GIARDIA GENOME REMARK 999 (GB ENTRY EAA46366.1) THE CORRECT RESIDUE AT POSITION 129 IS GLY. DBREF 3GAK A 1 323 UNP O97447 O97447_GIALA 1 323 DBREF 3GAK B 1 323 UNP O97447 O97447_GIALA 1 323 SEQADV 3GAK GLY A 129 UNP O97447 SER 129 SEE REMARK 999 SEQADV 3GAK GLY B 129 UNP O97447 SER 129 SEE REMARK 999 SEQRES 1 A 323 MET PRO LEU CYS THR LEU ARG GLN MET LEU GLY GLU ALA SEQRES 2 A 323 ARG LYS HIS LYS TYR GLY VAL GLY ALA PHE ASN VAL ASN SEQRES 3 A 323 ASN MET GLU GLN ILE GLN GLY ILE MET LYS ALA VAL VAL SEQRES 4 A 323 GLN LEU LYS SER PRO VAL ILE LEU GLN CYS SER ARG GLY SEQRES 5 A 323 ALA LEU LYS TYR SER ASP MET ILE TYR LEU LYS LYS LEU SEQRES 6 A 323 CYS GLU ALA ALA LEU GLU LYS HIS PRO ASP ILE PRO ILE SEQRES 7 A 323 CYS ILE HIS LEU ASP HIS GLY ASP THR LEU GLU SER VAL SEQRES 8 A 323 LYS MET ALA ILE ASP LEU GLY PHE SER SER VAL MET ILE SEQRES 9 A 323 ASP ALA SER HIS HIS PRO PHE ASP GLU ASN VAL ARG ILE SEQRES 10 A 323 THR LYS GLU VAL VAL ALA TYR ALA HIS ALA ARG GLY VAL SEQRES 11 A 323 SER VAL GLU ALA GLU LEU GLY THR LEU GLY GLY ILE GLU SEQRES 12 A 323 GLU ASP VAL GLN ASN THR VAL GLN LEU THR GLU PRO GLN SEQRES 13 A 323 ASP ALA LYS LYS PHE VAL GLU LEU THR GLY VAL ASP ALA SEQRES 14 A 323 LEU ALA VAL ALA ILE GLY THR SER HIS GLY ALA TYR LYS SEQRES 15 A 323 PHE LYS SER GLU SER ASP ILE ARG LEU ALA ILE ASP ARG SEQRES 16 A 323 VAL LYS THR ILE SER ASP LEU THR GLY ILE PRO LEU VAL SEQRES 17 A 323 MET HIS GLY SER SER SER VAL PRO LYS ASP VAL LYS ASP SEQRES 18 A 323 MET ILE ASN LYS TYR GLY GLY LYS MET PRO ASP ALA VAL SEQRES 19 A 323 GLY VAL PRO ILE GLU SER ILE VAL HIS ALA ILE GLY GLU SEQRES 20 A 323 GLY VAL CYS LYS ILE ASN VAL ASP SER ASP SER ARG MET SEQRES 21 A 323 ALA MET THR GLY ALA ILE ARG LYS VAL PHE VAL GLU HIS SEQRES 22 A 323 PRO GLU LYS PHE ASP PRO ARG ASP TYR LEU GLY PRO GLY SEQRES 23 A 323 ARG ASP ALA ILE THR GLU MET LEU ILE PRO LYS ILE LYS SEQRES 24 A 323 ALA PHE GLY SER ALA GLY HIS ALA GLY ASP TYR LYS VAL SEQRES 25 A 323 VAL SER LEU GLU GLU ALA LYS ALA TRP TYR LYS SEQRES 1 B 323 MET PRO LEU CYS THR LEU ARG GLN MET LEU GLY GLU ALA SEQRES 2 B 323 ARG LYS HIS LYS TYR GLY VAL GLY ALA PHE ASN VAL ASN SEQRES 3 B 323 ASN MET GLU GLN ILE GLN GLY ILE MET LYS ALA VAL VAL SEQRES 4 B 323 GLN LEU LYS SER PRO VAL ILE LEU GLN CYS SER ARG GLY SEQRES 5 B 323 ALA LEU LYS TYR SER ASP MET ILE TYR LEU LYS LYS LEU SEQRES 6 B 323 CYS GLU ALA ALA LEU GLU LYS HIS PRO ASP ILE PRO ILE SEQRES 7 B 323 CYS ILE HIS LEU ASP HIS GLY ASP THR LEU GLU SER VAL SEQRES 8 B 323 LYS MET ALA ILE ASP LEU GLY PHE SER SER VAL MET ILE SEQRES 9 B 323 ASP ALA SER HIS HIS PRO PHE ASP GLU ASN VAL ARG ILE SEQRES 10 B 323 THR LYS GLU VAL VAL ALA TYR ALA HIS ALA ARG GLY VAL SEQRES 11 B 323 SER VAL GLU ALA GLU LEU GLY THR LEU GLY GLY ILE GLU SEQRES 12 B 323 GLU ASP VAL GLN ASN THR VAL GLN LEU THR GLU PRO GLN SEQRES 13 B 323 ASP ALA LYS LYS PHE VAL GLU LEU THR GLY VAL ASP ALA SEQRES 14 B 323 LEU ALA VAL ALA ILE GLY THR SER HIS GLY ALA TYR LYS SEQRES 15 B 323 PHE LYS SER GLU SER ASP ILE ARG LEU ALA ILE ASP ARG SEQRES 16 B 323 VAL LYS THR ILE SER ASP LEU THR GLY ILE PRO LEU VAL SEQRES 17 B 323 MET HIS GLY SER SER SER VAL PRO LYS ASP VAL LYS ASP SEQRES 18 B 323 MET ILE ASN LYS TYR GLY GLY LYS MET PRO ASP ALA VAL SEQRES 19 B 323 GLY VAL PRO ILE GLU SER ILE VAL HIS ALA ILE GLY GLU SEQRES 20 B 323 GLY VAL CYS LYS ILE ASN VAL ASP SER ASP SER ARG MET SEQRES 21 B 323 ALA MET THR GLY ALA ILE ARG LYS VAL PHE VAL GLU HIS SEQRES 22 B 323 PRO GLU LYS PHE ASP PRO ARG ASP TYR LEU GLY PRO GLY SEQRES 23 B 323 ARG ASP ALA ILE THR GLU MET LEU ILE PRO LYS ILE LYS SEQRES 24 B 323 ALA PHE GLY SER ALA GLY HIS ALA GLY ASP TYR LYS VAL SEQRES 25 B 323 VAL SER LEU GLU GLU ALA LYS ALA TRP TYR LYS HET ZN A 331 1 HET SO4 A 327 5 HET SO4 A 328 5 HET SO4 A 330 5 HET ZN B 332 1 HET SO4 B 329 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 4(O4 S 2-) HELIX 1 1 THR A 5 HIS A 16 1 12 HELIX 2 2 ASN A 27 LEU A 41 1 15 HELIX 3 3 SER A 50 SER A 57 1 8 HELIX 4 4 MET A 59 HIS A 73 1 15 HELIX 5 5 THR A 87 ASP A 96 1 10 HELIX 6 6 PRO A 110 ARG A 128 1 19 HELIX 7 7 GLU A 154 GLY A 166 1 13 HELIX 8 8 ASP A 194 GLY A 204 1 11 HELIX 9 9 PRO A 216 TYR A 226 1 11 HELIX 10 10 PRO A 237 GLU A 247 1 11 HELIX 11 11 ASP A 255 HIS A 273 1 19 HELIX 12 12 ASP A 278 GLY A 302 1 25 HELIX 13 13 GLU A 316 TYR A 322 5 7 HELIX 14 14 THR B 5 HIS B 16 1 12 HELIX 15 15 ASN B 27 LEU B 41 1 15 HELIX 16 16 ARG B 51 SER B 57 1 7 HELIX 17 17 MET B 59 HIS B 73 1 15 HELIX 18 18 LEU B 88 LEU B 97 1 10 HELIX 19 19 PRO B 110 ARG B 128 1 19 HELIX 20 20 GLU B 154 LEU B 164 1 11 HELIX 21 21 ALA B 192 GLY B 204 1 13 HELIX 22 22 PRO B 216 TYR B 226 1 11 HELIX 23 23 PRO B 237 GLU B 247 1 11 HELIX 24 24 ASP B 255 HIS B 273 1 19 HELIX 25 25 PRO B 279 GLY B 302 1 24 HELIX 26 26 GLY B 305 ASP B 309 5 5 HELIX 27 27 SER B 314 TYR B 322 1 9 SHEET 1 A 9 VAL A 20 ASN A 24 0 SHEET 2 A 9 VAL A 45 CYS A 49 1 O ILE A 46 N PHE A 23 SHEET 3 A 9 ILE A 78 GLY A 85 1 O HIS A 81 N CYS A 49 SHEET 4 A 9 SER A 101 ILE A 104 1 O SER A 101 N LEU A 82 SHEET 5 A 9 SER A 131 LEU A 136 1 O GLU A 133 N VAL A 102 SHEET 6 A 9 ALA A 169 VAL A 172 1 O ALA A 171 N ALA A 134 SHEET 7 A 9 LEU A 207 MET A 209 1 O VAL A 208 N VAL A 172 SHEET 8 A 9 VAL A 249 VAL A 254 1 O LYS A 251 N MET A 209 SHEET 9 A 9 VAL A 20 ASN A 24 1 N ALA A 22 O VAL A 254 SHEET 1 B 9 VAL B 20 ASN B 24 0 SHEET 2 B 9 VAL B 45 SER B 50 1 O GLN B 48 N PHE B 23 SHEET 3 B 9 ILE B 78 GLY B 85 1 O CYS B 79 N LEU B 47 SHEET 4 B 9 SER B 101 ILE B 104 1 O MET B 103 N GLY B 85 SHEET 5 B 9 SER B 131 GLU B 135 1 O GLU B 133 N VAL B 102 SHEET 6 B 9 ALA B 169 ALA B 171 1 O ALA B 171 N ALA B 134 SHEET 7 B 9 LEU B 207 MET B 209 1 O VAL B 208 N LEU B 170 SHEET 8 B 9 VAL B 249 VAL B 254 1 O LYS B 251 N MET B 209 SHEET 9 B 9 VAL B 20 ASN B 24 1 N ALA B 22 O ILE B 252 LINK OE2 GLU A 135 ZN ZN A 331 1555 1555 2.19 LINK ND1 HIS A 210 ZN ZN A 331 1555 1555 2.04 LINK NE2 HIS B 84 ZN ZN B 332 1555 1555 2.20 LINK ND1 HIS B 210 ZN ZN B 332 1555 1555 2.31 SITE 1 AC1 4 HIS A 84 MET A 103 GLU A 135 HIS A 210 SITE 1 AC2 3 HIS B 84 HIS B 178 HIS B 210 SITE 1 AC3 6 GLY A 211 SER A 212 SER A 213 ASN A 253 SITE 2 AC3 6 ASP A 255 SER A 256 SITE 1 AC4 3 SER A 50 ARG A 259 ARG B 280 SITE 1 AC5 7 GLY B 179 LYS B 182 GLY B 211 SER B 212 SITE 2 AC5 7 SER B 213 ASP B 255 SER B 256 SITE 1 AC6 3 ARG A 280 SER B 50 ARG B 259 CRYST1 62.920 62.920 318.590 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015893 0.009176 0.000000 0.00000 SCALE2 0.000000 0.018352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003139 0.00000