HEADER OXIDOREDUCTASE 18-FEB-09 3GB5 TITLE CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) BOUND TITLE 2 TO FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IODOTYROSINE DEHALOGENASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-285; COMPND 5 SYNONYM: IYD-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IYD, DEHAL1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS IYD, IODIDE SALVAGE, FLAVOPROTEIN, FMN, MEMBRANE, NADP, KEYWDS 2 OXIDOREDUCTASE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR S.R.THOMAS,P.M.MCTAMNEY,J.M.ADLER,N.LARONDE-LEBLANC,S.E.ROKITA REVDAT 5 21-FEB-24 3GB5 1 REMARK SEQADV REVDAT 4 25-OCT-17 3GB5 1 REMARK REVDAT 3 13-JUL-11 3GB5 1 VERSN REVDAT 2 28-JUL-09 3GB5 1 JRNL REVDAT 1 12-MAY-09 3GB5 0 JRNL AUTH S.R.THOMAS,P.M.MCTAMNEY,J.M.ADLER,N.LARONDE-LEBLANC, JRNL AUTH 2 S.E.ROKITA JRNL TITL CRYSTAL STRUCTURE OF IODOTYROSINE DEIODINASE, A NOVEL JRNL TITL 2 FLAVOPROTEIN RESPONSIBLE FOR IODIDE SALVAGE IN THYROID JRNL TITL 3 GLANDS. JRNL REF J.BIOL.CHEM. V. 284 19659 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19436071 JRNL DOI 10.1074/JBC.M109.013458 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1287 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1605 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2187 ; 1.569 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ;16.679 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;29.485 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 286 ;14.079 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1186 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 712 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1093 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1015 ; 1.121 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1590 ; 1.606 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 708 ; 2.803 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 597 ; 4.326 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5688 45.6643 26.0996 REMARK 3 T TENSOR REMARK 3 T11: -0.0921 T22: -0.0477 REMARK 3 T33: -0.0902 T12: -0.0191 REMARK 3 T13: 0.0275 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.6419 L22: 1.3365 REMARK 3 L33: 1.3950 L12: -0.5674 REMARK 3 L13: 0.1394 L23: -0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.2253 S13: 0.0897 REMARK 3 S21: 0.0356 S22: 0.0210 S23: 0.0265 REMARK 3 S31: -0.2109 S32: 0.0211 S33: 0.0236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. THE FRIEDEL PAIRS WERE USED IN REMARK 3 PHASING. 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 3GB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.653 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3000, 0.1 M ACETATE, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.88400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.76800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.76800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.88400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE DIMERIC ASSEMBLY OF THE BIOLOGICAL REMARK 300 UNIT IS CONFIRMED BY ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.65200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 VAL A 36 REMARK 465 GLN A 37 REMARK 465 PRO A 38 REMARK 465 TRP A 39 REMARK 465 VAL A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 ASP A 46 REMARK 465 SER A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 GLN A 52 REMARK 465 VAL A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 ASP A 56 REMARK 465 ALA A 57 REMARK 465 GLU A 58 REMARK 465 GLU A 59 REMARK 465 TRP A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 SER A 66 REMARK 465 VAL A 67 REMARK 465 ASN A 156 REMARK 465 TYR A 157 REMARK 465 MET A 158 REMARK 465 LYS A 159 REMARK 465 ARG A 160 REMARK 465 MET A 161 REMARK 465 GLY A 162 REMARK 465 LYS A 163 REMARK 465 ARG A 164 REMARK 465 TRP A 165 REMARK 465 VAL A 166 REMARK 465 THR A 167 REMARK 465 ASP A 168 REMARK 465 LEU A 169 REMARK 465 LYS A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 465 ARG A 173 REMARK 465 THR A 174 REMARK 465 ASN A 175 REMARK 465 TRP A 176 REMARK 465 ILE A 177 REMARK 465 HIS A 195 REMARK 465 GLY A 196 REMARK 465 PHE A 197 REMARK 465 ALA A 198 REMARK 465 ALA A 199 REMARK 465 ASN A 200 REMARK 465 GLY A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 465 LYS A 204 REMARK 465 VAL A 205 REMARK 465 HIS A 206 REMARK 465 TYR A 207 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 129 57.00 38.59 REMARK 500 PRO A 130 49.16 -87.17 REMARK 500 GLU A 152 21.86 -64.68 REMARK 500 GLU A 154 56.69 75.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 122 PRO A 123 149.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GFD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) REMARK 900 BOUND TO FMN AND MONO-IODOTYROSINE (MIT) REMARK 900 RELATED ID: 3GH8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) REMARK 900 BOUND TO FMN AND DI-IODOTYROSINE (DIT) DBREF 3GB5 A 34 285 UNP Q9DCX8 IYD1_MOUSE 34 285 SEQADV 3GB5 MET A 33 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GB5 HIS A 286 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GB5 HIS A 287 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GB5 HIS A 288 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GB5 HIS A 289 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GB5 HIS A 290 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GB5 HIS A 291 UNP Q9DCX8 EXPRESSION TAG SEQRES 1 A 259 MET ALA GLN VAL GLN PRO TRP VAL ASP GLU ASP LEU LYS SEQRES 2 A 259 ASP SER THR GLU ASP LEU GLN VAL GLU GLU ASP ALA GLU SEQRES 3 A 259 GLU TRP GLN GLU ALA GLU GLU SER VAL GLU HIS ILE PRO SEQRES 4 A 259 PHE SER HIS THR ARG TYR PRO GLU GLN GLU MET ARG MET SEQRES 5 A 259 ARG SER GLN GLU PHE TYR GLU LEU LEU ASN LYS ARG ARG SEQRES 6 A 259 SER VAL ARG PHE ILE SER SER GLU HIS VAL PRO MET GLU SEQRES 7 A 259 VAL ILE GLU ASN VAL ILE LYS ALA ALA GLY THR ALA PRO SEQRES 8 A 259 SER GLY ALA HIS THR GLU PRO TRP THR PHE VAL VAL VAL SEQRES 9 A 259 LYS ASP PRO ASP MET LYS HIS LYS ILE ARG GLU ILE ILE SEQRES 10 A 259 GLU GLU GLU GLU GLU ILE ASN TYR MET LYS ARG MET GLY SEQRES 11 A 259 LYS ARG TRP VAL THR ASP LEU LYS LYS LEU ARG THR ASN SEQRES 12 A 259 TRP ILE LYS GLU TYR LEU ASP THR ALA PRO VAL LEU ILE SEQRES 13 A 259 LEU ILE PHE LYS GLN VAL HIS GLY PHE ALA ALA ASN GLY SEQRES 14 A 259 LYS LYS LYS VAL HIS TYR TYR ASN GLU ILE SER VAL SER SEQRES 15 A 259 ILE ALA CYS GLY LEU LEU LEU ALA ALA LEU GLN ASN ALA SEQRES 16 A 259 GLY LEU VAL THR VAL THR THR THR PRO LEU ASN CYS GLY SEQRES 17 A 259 PRO ARG LEU ARG VAL LEU LEU GLY ARG PRO SER HIS GLU SEQRES 18 A 259 LYS LEU LEU VAL LEU LEU PRO VAL GLY TYR PRO SER ARG SEQRES 19 A 259 ASP ALA THR VAL PRO ASP LEU LYS ARG LYS ALA LEU ASP SEQRES 20 A 259 GLN ILE MET VAL THR VAL HIS HIS HIS HIS HIS HIS HET FMN A 301 31 HET PO4 A 302 5 HET ACT A 303 4 HET ACT A 304 4 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 PO4 O4 P 3- FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 HOH *132(H2 O) HELIX 1 1 PRO A 78 LYS A 95 1 18 HELIX 2 2 PRO A 108 GLY A 120 1 13 HELIX 3 3 SER A 124 THR A 128 5 5 HELIX 4 4 ASP A 138 GLU A 152 1 15 HELIX 5 5 GLU A 179 ALA A 184 1 6 HELIX 6 6 TYR A 208 ALA A 227 1 20 HELIX 7 7 PRO A 236 ASN A 238 5 3 HELIX 8 8 CYS A 239 LEU A 247 1 9 HELIX 9 9 ALA A 277 ILE A 281 5 5 SHEET 1 A 3 TRP A 131 VAL A 136 0 SHEET 2 A 3 VAL A 186 GLN A 193 -1 O LEU A 189 N VAL A 134 SHEET 3 A 3 GLU A 253 VAL A 261 -1 O VAL A 257 N ILE A 190 CISPEP 1 GLU A 153 GLU A 154 0 -0.67 SITE 1 AC1 21 ARG A 96 ARG A 97 SER A 98 ARG A 100 SITE 2 AC1 21 PRO A 123 SER A 124 GLY A 125 HIS A 127 SITE 3 AC1 21 TYR A 208 SER A 212 VAL A 232 THR A 233 SITE 4 AC1 21 THR A 235 LEU A 273 ARG A 275 ACT A 303 SITE 5 AC1 21 HOH A 415 HOH A 416 HOH A 426 HOH A 443 SITE 6 AC1 21 HOH A 492 SITE 1 AC2 9 SER A 103 SER A 104 ARG A 266 THR A 284 SITE 2 AC2 9 VAL A 285 HIS A 286 ACT A 304 HOH A 440 SITE 3 AC2 9 HOH A 457 SITE 1 AC3 3 ALA A 126 FMN A 301 HOH A 479 SITE 1 AC4 6 SER A 265 ARG A 266 ASP A 267 HIS A 286 SITE 2 AC4 6 HIS A 287 PO4 A 302 CRYST1 87.756 87.756 62.652 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011395 0.006579 0.000000 0.00000 SCALE2 0.000000 0.013158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015961 0.00000