data_3GBW # _entry.id 3GBW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GBW RCSB RCSB051671 WWPDB D_1000051671 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-13170b _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3GBW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-02-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sampathkumar, P.' 1 ? 'Ozyurt, S.A.' 2 ? 'Wasserman, S.R.' 3 ? 'Klemke, R.L.' 4 ? 'Miller, S.A.' 5 ? 'Bain, K.T.' 6 ? 'Rutter, M.E.' 7 ? 'Tarun, G.' 8 ? 'Atwell, S.' 9 ? 'Sauder, J.M.' 10 0000-0002-0254-4955 'Burley, S.K.' 11 0000-0002-2487-9713 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 12 ? # _citation.id primary _citation.title ;Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 397 _citation.page_first 883 _citation.page_last 892 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20156452 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.02.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sampathkumar, P.' 1 ? primary 'Ozyurt, S.A.' 2 ? primary 'Miller, S.A.' 3 ? primary 'Bain, K.T.' 4 ? primary 'Rutter, M.E.' 5 ? primary 'Gheyi, T.' 6 ? primary 'Abrams, B.' 7 ? primary 'Wang, Y.' 8 ? primary 'Atwell, S.' 9 ? primary 'Luz, J.G.' 10 ? primary 'Thompson, D.A.' 11 ? primary 'Wasserman, S.R.' 12 ? primary 'Emtage, J.S.' 13 ? primary 'Park, E.C.' 14 ? primary 'Rongo, C.' 15 ? primary 'Jin, Y.' 16 ? primary 'Klemke, R.L.' 17 ? primary 'Sauder, J.M.' 18 ? primary 'Burley, S.K.' 19 0000-0002-2487-9713 # _cell.length_a 41.688 _cell.length_b 57.767 _cell.length_c 64.633 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GBW _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3GBW _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase MYCBP2' 17816.225 1 6.3.2.- ? 'First PHR domain: UNP residues 1191-1352' ? 2 water nat water 18.015 209 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Myc-binding protein 2, Protein associated with Myc, Pam/highwire/rpm-1 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SLEDYSVVNRFESHGGGWGYSAHSVEAIRFSADTDILLGGLGLFGGRGEYTAKIKLFELGPDGGDHETDGDLLAETDVLA YDCAAREKYA(MSE)(MSE)FDEPVLLQAGWWYVAWARVSGPSSDCGSHGQASITTDDGVIFQFKSSKKSNNGTDVNAGQ IPQLLYRLPTSD ; _entity_poly.pdbx_seq_one_letter_code_can ;SLEDYSVVNRFESHGGGWGYSAHSVEAIRFSADTDILLGGLGLFGGRGEYTAKIKLFELGPDGGDHETDGDLLAETDVLA YDCAAREKYAMMFDEPVLLQAGWWYVAWARVSGPSSDCGSHGQASITTDDGVIFQFKSSKKSNNGTDVNAGQIPQLLYRL PTSD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-13170b # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 GLU n 1 4 ASP n 1 5 TYR n 1 6 SER n 1 7 VAL n 1 8 VAL n 1 9 ASN n 1 10 ARG n 1 11 PHE n 1 12 GLU n 1 13 SER n 1 14 HIS n 1 15 GLY n 1 16 GLY n 1 17 GLY n 1 18 TRP n 1 19 GLY n 1 20 TYR n 1 21 SER n 1 22 ALA n 1 23 HIS n 1 24 SER n 1 25 VAL n 1 26 GLU n 1 27 ALA n 1 28 ILE n 1 29 ARG n 1 30 PHE n 1 31 SER n 1 32 ALA n 1 33 ASP n 1 34 THR n 1 35 ASP n 1 36 ILE n 1 37 LEU n 1 38 LEU n 1 39 GLY n 1 40 GLY n 1 41 LEU n 1 42 GLY n 1 43 LEU n 1 44 PHE n 1 45 GLY n 1 46 GLY n 1 47 ARG n 1 48 GLY n 1 49 GLU n 1 50 TYR n 1 51 THR n 1 52 ALA n 1 53 LYS n 1 54 ILE n 1 55 LYS n 1 56 LEU n 1 57 PHE n 1 58 GLU n 1 59 LEU n 1 60 GLY n 1 61 PRO n 1 62 ASP n 1 63 GLY n 1 64 GLY n 1 65 ASP n 1 66 HIS n 1 67 GLU n 1 68 THR n 1 69 ASP n 1 70 GLY n 1 71 ASP n 1 72 LEU n 1 73 LEU n 1 74 ALA n 1 75 GLU n 1 76 THR n 1 77 ASP n 1 78 VAL n 1 79 LEU n 1 80 ALA n 1 81 TYR n 1 82 ASP n 1 83 CYS n 1 84 ALA n 1 85 ALA n 1 86 ARG n 1 87 GLU n 1 88 LYS n 1 89 TYR n 1 90 ALA n 1 91 MSE n 1 92 MSE n 1 93 PHE n 1 94 ASP n 1 95 GLU n 1 96 PRO n 1 97 VAL n 1 98 LEU n 1 99 LEU n 1 100 GLN n 1 101 ALA n 1 102 GLY n 1 103 TRP n 1 104 TRP n 1 105 TYR n 1 106 VAL n 1 107 ALA n 1 108 TRP n 1 109 ALA n 1 110 ARG n 1 111 VAL n 1 112 SER n 1 113 GLY n 1 114 PRO n 1 115 SER n 1 116 SER n 1 117 ASP n 1 118 CYS n 1 119 GLY n 1 120 SER n 1 121 HIS n 1 122 GLY n 1 123 GLN n 1 124 ALA n 1 125 SER n 1 126 ILE n 1 127 THR n 1 128 THR n 1 129 ASP n 1 130 ASP n 1 131 GLY n 1 132 VAL n 1 133 ILE n 1 134 PHE n 1 135 GLN n 1 136 PHE n 1 137 LYS n 1 138 SER n 1 139 SER n 1 140 LYS n 1 141 LYS n 1 142 SER n 1 143 ASN n 1 144 ASN n 1 145 GLY n 1 146 THR n 1 147 ASP n 1 148 VAL n 1 149 ASN n 1 150 ALA n 1 151 GLY n 1 152 GLN n 1 153 ILE n 1 154 PRO n 1 155 GLN n 1 156 LEU n 1 157 LEU n 1 158 TYR n 1 159 ARG n 1 160 LEU n 1 161 PRO n 1 162 THR n 1 163 SER n 1 164 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Mycbp2, Pam, Rpm-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-Codon+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector pET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX4(BC), modified pET26b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYCB2_MOUSE _struct_ref.pdbx_db_accession Q7TPH6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EDYSVVNRFESHGGGWGYSAHSVEAIRFSADTDILLGGLGLFGGRGEYTAKIKLFELGPDGGDHETDGDLLAETDVLAYD CAAREKYAMMFDEPVLLQAGWWYVAWARVSGPSSDCGSHGQASITTDDGVIFQFKSSKKSNNGTDVNAGQIPQLLYRLPT SD ; _struct_ref.pdbx_align_begin 1191 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GBW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7TPH6 _struct_ref_seq.db_align_beg 1191 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1352 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1229 _struct_ref_seq.pdbx_auth_seq_align_end 1390 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GBW SER A 1 ? UNP Q7TPH6 ? ? 'expression tag' 1227 1 1 3GBW LEU A 2 ? UNP Q7TPH6 ? ? 'expression tag' 1228 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GBW _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '100mM Sodium acetate pH 4.6, 25% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-02-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator diamond _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.97929 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 3GBW _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.32 _reflns.d_resolution_low 41.70 _reflns.number_all ? _reflns.number_obs 37295 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_sigmaI 23.2 _reflns.B_iso_Wilson_estimate 11.84 _reflns.pdbx_redundancy 11.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.32 _reflns_shell.d_res_low 1.39 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 16.4 _reflns_shell.pdbx_Rsym_value 0.195 _reflns_shell.pdbx_redundancy 10.8 _reflns_shell.number_unique_all 5369 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GBW _refine.ls_d_res_high 1.320 _refine.ls_d_res_low 18.450 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.590 _refine.ls_number_reflns_obs 37210 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.164 _refine.ls_R_factor_R_work 0.162 _refine.ls_R_factor_R_free 0.189 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1864 _refine.B_iso_mean 14.566 _refine.aniso_B[1][1] -0.120 _refine.aniso_B[2][2] 0.010 _refine.aniso_B[3][3] 0.110 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.pdbx_overall_ESU_R 0.058 _refine.pdbx_overall_ESU_R_Free 0.052 _refine.overall_SU_ML 0.028 _refine.overall_SU_B 1.437 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 48.07 _refine.B_iso_min 7.31 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 217 _refine_hist.number_atoms_total 1513 _refine_hist.d_res_high 1.320 _refine_hist.d_res_low 18.450 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1339 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 896 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1832 1.318 1.946 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2188 0.806 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 184 6.668 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 66 30.530 24.394 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 213 10.037 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 18.302 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 190 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1572 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 291 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 192 0.215 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 920 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 626 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 731 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 131 0.124 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 8 0.269 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 28 0.208 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 14 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 984 1.218 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 350 0.391 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1322 1.581 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 585 2.381 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 499 3.206 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2714 2.529 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 217 4.561 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2192 2.304 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.320 _refine_ls_shell.d_res_low 1.354 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.700 _refine_ls_shell.number_reflns_R_work 2530 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.166 _refine_ls_shell.R_factor_R_free 0.223 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 162 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2692 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GBW _struct.title 'Crystal structure of the first PHR domain of the Mouse Myc-binding protein 2 (MYCBP-2)' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase MYCBP2 (E.C.6.3.2.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GBW _struct_keywords.text ;Myc-binding protein 2, MYCBP2, Probable E3 ubiquitin-protein ligase MYCBP2, Protein Associated with Myc, PAM, RPM-1, PHR domain, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, Alternative splicing, Ligase, Metal-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Ubl conjugation pathway, Zinc, Zinc-finger, New York SGX Research Center for Structural Genomics ; _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 90 C ? ? ? 1_555 A MSE 91 N ? ? A ALA 1316 A MSE 1317 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 91 C ? ? ? 1_555 A MSE 92 N ? ? A MSE 1317 A MSE 1318 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? A MSE 92 C ? ? ? 1_555 A PHE 93 N ? ? A MSE 1318 A PHE 1319 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 6 ? ASN A 9 ? SER A 1232 ASN A 1235 A 2 GLN A 155 ? ARG A 159 ? GLN A 1381 ARG A 1385 A 3 ILE A 36 ? PHE A 44 ? ILE A 1262 PHE A 1270 A 4 LYS A 88 ? LEU A 99 ? LYS A 1314 LEU A 1325 B 1 PHE A 11 ? HIS A 14 ? PHE A 1237 HIS A 1240 B 2 GLY A 119 ? GLY A 122 ? GLY A 1345 GLY A 1348 C 1 ASP A 71 ? GLU A 75 ? ASP A 1297 GLU A 1301 C 2 TYR A 50 ? GLY A 60 ? TYR A 1276 GLY A 1286 C 3 LEU A 79 ? TYR A 81 ? LEU A 1305 TYR A 1307 D 1 ASP A 71 ? GLU A 75 ? ASP A 1297 GLU A 1301 D 2 TYR A 50 ? GLY A 60 ? TYR A 1276 GLY A 1286 D 3 TRP A 104 ? SER A 112 ? TRP A 1330 SER A 1338 D 4 GLU A 26 ? ALA A 32 ? GLU A 1252 ALA A 1258 D 5 ILE A 133 ? SER A 138 ? ILE A 1359 SER A 1364 D 6 SER A 125 ? THR A 127 ? SER A 1351 THR A 1353 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 6 ? N SER A 1232 O TYR A 158 ? O TYR A 1384 A 2 3 O ARG A 159 ? O ARG A 1385 N LEU A 37 ? N LEU A 1263 A 3 4 N ILE A 36 ? N ILE A 1262 O LEU A 99 ? O LEU A 1325 B 1 2 N SER A 13 ? N SER A 1239 O SER A 120 ? O SER A 1346 C 1 2 O LEU A 73 ? O LEU A 1299 N LEU A 56 ? N LEU A 1282 C 2 3 N TYR A 50 ? N TYR A 1276 O TYR A 81 ? O TYR A 1307 D 1 2 O LEU A 73 ? O LEU A 1299 N LEU A 56 ? N LEU A 1282 D 2 3 N LEU A 59 ? N LEU A 1285 O TRP A 104 ? O TRP A 1330 D 3 4 O ALA A 109 ? O ALA A 1335 N GLU A 26 ? N GLU A 1252 D 4 5 N SER A 31 ? N SER A 1257 O GLN A 135 ? O GLN A 1361 D 5 6 O PHE A 134 ? O PHE A 1360 N ILE A 126 ? N ILE A 1352 # _atom_sites.entry_id 3GBW _atom_sites.fract_transf_matrix[1][1] 0.023988 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017311 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015472 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1227 1227 SER SER A . n A 1 2 LEU 2 1228 1228 LEU LEU A . n A 1 3 GLU 3 1229 1229 GLU GLU A . n A 1 4 ASP 4 1230 1230 ASP ASP A . n A 1 5 TYR 5 1231 1231 TYR TYR A . n A 1 6 SER 6 1232 1232 SER SER A . n A 1 7 VAL 7 1233 1233 VAL VAL A . n A 1 8 VAL 8 1234 1234 VAL VAL A . n A 1 9 ASN 9 1235 1235 ASN ASN A . n A 1 10 ARG 10 1236 1236 ARG ARG A . n A 1 11 PHE 11 1237 1237 PHE PHE A . n A 1 12 GLU 12 1238 1238 GLU GLU A . n A 1 13 SER 13 1239 1239 SER SER A . n A 1 14 HIS 14 1240 1240 HIS HIS A . n A 1 15 GLY 15 1241 1241 GLY GLY A . n A 1 16 GLY 16 1242 1242 GLY GLY A . n A 1 17 GLY 17 1243 1243 GLY GLY A . n A 1 18 TRP 18 1244 1244 TRP TRP A . n A 1 19 GLY 19 1245 1245 GLY GLY A . n A 1 20 TYR 20 1246 1246 TYR TYR A . n A 1 21 SER 21 1247 1247 SER SER A . n A 1 22 ALA 22 1248 1248 ALA ALA A . n A 1 23 HIS 23 1249 1249 HIS HIS A . n A 1 24 SER 24 1250 1250 SER SER A . n A 1 25 VAL 25 1251 1251 VAL VAL A . n A 1 26 GLU 26 1252 1252 GLU GLU A . n A 1 27 ALA 27 1253 1253 ALA ALA A . n A 1 28 ILE 28 1254 1254 ILE ILE A . n A 1 29 ARG 29 1255 1255 ARG ARG A . n A 1 30 PHE 30 1256 1256 PHE PHE A . n A 1 31 SER 31 1257 1257 SER SER A . n A 1 32 ALA 32 1258 1258 ALA ALA A . n A 1 33 ASP 33 1259 1259 ASP ASP A . n A 1 34 THR 34 1260 1260 THR THR A . n A 1 35 ASP 35 1261 1261 ASP ASP A . n A 1 36 ILE 36 1262 1262 ILE ILE A . n A 1 37 LEU 37 1263 1263 LEU LEU A . n A 1 38 LEU 38 1264 1264 LEU LEU A . n A 1 39 GLY 39 1265 1265 GLY GLY A . n A 1 40 GLY 40 1266 1266 GLY GLY A . n A 1 41 LEU 41 1267 1267 LEU LEU A . n A 1 42 GLY 42 1268 1268 GLY GLY A . n A 1 43 LEU 43 1269 1269 LEU LEU A . n A 1 44 PHE 44 1270 1270 PHE PHE A . n A 1 45 GLY 45 1271 1271 GLY GLY A . n A 1 46 GLY 46 1272 1272 GLY GLY A . n A 1 47 ARG 47 1273 1273 ARG ARG A . n A 1 48 GLY 48 1274 1274 GLY GLY A . n A 1 49 GLU 49 1275 1275 GLU GLU A . n A 1 50 TYR 50 1276 1276 TYR TYR A . n A 1 51 THR 51 1277 1277 THR THR A . n A 1 52 ALA 52 1278 1278 ALA ALA A . n A 1 53 LYS 53 1279 1279 LYS LYS A . n A 1 54 ILE 54 1280 1280 ILE ILE A . n A 1 55 LYS 55 1281 1281 LYS LYS A . n A 1 56 LEU 56 1282 1282 LEU LEU A . n A 1 57 PHE 57 1283 1283 PHE PHE A . n A 1 58 GLU 58 1284 1284 GLU GLU A . n A 1 59 LEU 59 1285 1285 LEU LEU A . n A 1 60 GLY 60 1286 1286 GLY GLY A . n A 1 61 PRO 61 1287 1287 PRO PRO A . n A 1 62 ASP 62 1288 1288 ASP ASP A . n A 1 63 GLY 63 1289 1289 GLY GLY A . n A 1 64 GLY 64 1290 1290 GLY GLY A . n A 1 65 ASP 65 1291 1291 ASP ASP A . n A 1 66 HIS 66 1292 1292 HIS HIS A . n A 1 67 GLU 67 1293 1293 GLU GLU A . n A 1 68 THR 68 1294 1294 THR THR A . n A 1 69 ASP 69 1295 1295 ASP ASP A . n A 1 70 GLY 70 1296 1296 GLY GLY A . n A 1 71 ASP 71 1297 1297 ASP ASP A . n A 1 72 LEU 72 1298 1298 LEU LEU A . n A 1 73 LEU 73 1299 1299 LEU LEU A . n A 1 74 ALA 74 1300 1300 ALA ALA A . n A 1 75 GLU 75 1301 1301 GLU GLU A . n A 1 76 THR 76 1302 1302 THR THR A . n A 1 77 ASP 77 1303 1303 ASP ASP A . n A 1 78 VAL 78 1304 1304 VAL VAL A . n A 1 79 LEU 79 1305 1305 LEU LEU A . n A 1 80 ALA 80 1306 1306 ALA ALA A . n A 1 81 TYR 81 1307 1307 TYR TYR A . n A 1 82 ASP 82 1308 1308 ASP ASP A . n A 1 83 CYS 83 1309 1309 CYS CYS A . n A 1 84 ALA 84 1310 1310 ALA ALA A . n A 1 85 ALA 85 1311 1311 ALA ALA A . n A 1 86 ARG 86 1312 1312 ARG ARG A . n A 1 87 GLU 87 1313 1313 GLU GLU A . n A 1 88 LYS 88 1314 1314 LYS LYS A . n A 1 89 TYR 89 1315 1315 TYR TYR A . n A 1 90 ALA 90 1316 1316 ALA ALA A . n A 1 91 MSE 91 1317 1317 MSE MSE A . n A 1 92 MSE 92 1318 1318 MSE MSE A . n A 1 93 PHE 93 1319 1319 PHE PHE A . n A 1 94 ASP 94 1320 1320 ASP ASP A . n A 1 95 GLU 95 1321 1321 GLU GLU A . n A 1 96 PRO 96 1322 1322 PRO PRO A . n A 1 97 VAL 97 1323 1323 VAL VAL A . n A 1 98 LEU 98 1324 1324 LEU LEU A . n A 1 99 LEU 99 1325 1325 LEU LEU A . n A 1 100 GLN 100 1326 1326 GLN GLN A . n A 1 101 ALA 101 1327 1327 ALA ALA A . n A 1 102 GLY 102 1328 1328 GLY GLY A . n A 1 103 TRP 103 1329 1329 TRP TRP A . n A 1 104 TRP 104 1330 1330 TRP TRP A . n A 1 105 TYR 105 1331 1331 TYR TYR A . n A 1 106 VAL 106 1332 1332 VAL VAL A . n A 1 107 ALA 107 1333 1333 ALA ALA A . n A 1 108 TRP 108 1334 1334 TRP TRP A . n A 1 109 ALA 109 1335 1335 ALA ALA A . n A 1 110 ARG 110 1336 1336 ARG ARG A . n A 1 111 VAL 111 1337 1337 VAL VAL A . n A 1 112 SER 112 1338 1338 SER SER A . n A 1 113 GLY 113 1339 1339 GLY GLY A . n A 1 114 PRO 114 1340 1340 PRO PRO A . n A 1 115 SER 115 1341 1341 SER SER A . n A 1 116 SER 116 1342 1342 SER SER A . n A 1 117 ASP 117 1343 1343 ASP ASP A . n A 1 118 CYS 118 1344 1344 CYS CYS A . n A 1 119 GLY 119 1345 1345 GLY GLY A . n A 1 120 SER 120 1346 1346 SER SER A . n A 1 121 HIS 121 1347 1347 HIS HIS A . n A 1 122 GLY 122 1348 1348 GLY GLY A . n A 1 123 GLN 123 1349 1349 GLN GLN A . n A 1 124 ALA 124 1350 1350 ALA ALA A . n A 1 125 SER 125 1351 1351 SER SER A . n A 1 126 ILE 126 1352 1352 ILE ILE A . n A 1 127 THR 127 1353 1353 THR THR A . n A 1 128 THR 128 1354 1354 THR THR A . n A 1 129 ASP 129 1355 1355 ASP ASP A . n A 1 130 ASP 130 1356 1356 ASP ASP A . n A 1 131 GLY 131 1357 1357 GLY GLY A . n A 1 132 VAL 132 1358 1358 VAL VAL A . n A 1 133 ILE 133 1359 1359 ILE ILE A . n A 1 134 PHE 134 1360 1360 PHE PHE A . n A 1 135 GLN 135 1361 1361 GLN GLN A . n A 1 136 PHE 136 1362 1362 PHE PHE A . n A 1 137 LYS 137 1363 1363 LYS LYS A . n A 1 138 SER 138 1364 1364 SER SER A . n A 1 139 SER 139 1365 1365 SER SER A . n A 1 140 LYS 140 1366 1366 LYS LYS A . n A 1 141 LYS 141 1367 1367 LYS LYS A . n A 1 142 SER 142 1368 1368 SER SER A . n A 1 143 ASN 143 1369 1369 ASN ASN A . n A 1 144 ASN 144 1370 1370 ASN ASN A . n A 1 145 GLY 145 1371 1371 GLY GLY A . n A 1 146 THR 146 1372 1372 THR THR A . n A 1 147 ASP 147 1373 1373 ASP ASP A . n A 1 148 VAL 148 1374 1374 VAL VAL A . n A 1 149 ASN 149 1375 1375 ASN ASN A . n A 1 150 ALA 150 1376 1376 ALA ALA A . n A 1 151 GLY 151 1377 1377 GLY GLY A . n A 1 152 GLN 152 1378 1378 GLN GLN A . n A 1 153 ILE 153 1379 1379 ILE ILE A . n A 1 154 PRO 154 1380 1380 PRO PRO A . n A 1 155 GLN 155 1381 1381 GLN GLN A . n A 1 156 LEU 156 1382 1382 LEU LEU A . n A 1 157 LEU 157 1383 1383 LEU LEU A . n A 1 158 TYR 158 1384 1384 TYR TYR A . n A 1 159 ARG 159 1385 1385 ARG ARG A . n A 1 160 LEU 160 1386 1386 LEU LEU A . n A 1 161 PRO 161 1387 1387 PRO PRO A . n A 1 162 THR 162 1388 ? ? ? A . n A 1 163 SER 163 1389 ? ? ? A . n A 1 164 ASP 164 1390 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 27 27 HOH HOH A . B 2 HOH 28 28 28 HOH HOH A . B 2 HOH 29 29 29 HOH HOH A . B 2 HOH 30 30 30 HOH HOH A . B 2 HOH 31 31 31 HOH HOH A . B 2 HOH 32 32 32 HOH HOH A . B 2 HOH 33 33 33 HOH HOH A . B 2 HOH 34 34 34 HOH HOH A . B 2 HOH 35 35 35 HOH HOH A . B 2 HOH 36 36 36 HOH HOH A . B 2 HOH 37 37 37 HOH HOH A . B 2 HOH 38 38 38 HOH HOH A . B 2 HOH 39 39 39 HOH HOH A . B 2 HOH 40 40 40 HOH HOH A . B 2 HOH 41 41 41 HOH HOH A . B 2 HOH 42 42 42 HOH HOH A . B 2 HOH 43 43 43 HOH HOH A . B 2 HOH 44 44 44 HOH HOH A . B 2 HOH 45 45 45 HOH HOH A . B 2 HOH 46 46 46 HOH HOH A . B 2 HOH 47 47 47 HOH HOH A . B 2 HOH 48 48 48 HOH HOH A . B 2 HOH 49 49 49 HOH HOH A . B 2 HOH 50 50 50 HOH HOH A . B 2 HOH 51 51 51 HOH HOH A . B 2 HOH 52 52 52 HOH HOH A . B 2 HOH 53 53 53 HOH HOH A . B 2 HOH 54 54 54 HOH HOH A . B 2 HOH 55 55 55 HOH HOH A . B 2 HOH 56 56 56 HOH HOH A . B 2 HOH 57 57 57 HOH HOH A . B 2 HOH 58 58 58 HOH HOH A . B 2 HOH 59 59 59 HOH HOH A . B 2 HOH 60 60 60 HOH HOH A . B 2 HOH 61 61 61 HOH HOH A . B 2 HOH 62 62 62 HOH HOH A . B 2 HOH 63 63 63 HOH HOH A . B 2 HOH 64 64 64 HOH HOH A . B 2 HOH 65 65 65 HOH HOH A . B 2 HOH 66 66 66 HOH HOH A . B 2 HOH 67 67 67 HOH HOH A . B 2 HOH 68 68 68 HOH HOH A . B 2 HOH 69 69 69 HOH HOH A . B 2 HOH 70 70 70 HOH HOH A . B 2 HOH 71 71 71 HOH HOH A . B 2 HOH 72 72 72 HOH HOH A . B 2 HOH 73 73 73 HOH HOH A . B 2 HOH 74 74 74 HOH HOH A . B 2 HOH 75 75 75 HOH HOH A . B 2 HOH 76 76 76 HOH HOH A . B 2 HOH 77 77 77 HOH HOH A . B 2 HOH 78 78 78 HOH HOH A . B 2 HOH 79 79 79 HOH HOH A . B 2 HOH 80 80 80 HOH HOH A . B 2 HOH 81 81 81 HOH HOH A . B 2 HOH 82 82 82 HOH HOH A . B 2 HOH 83 83 83 HOH HOH A . B 2 HOH 84 84 84 HOH HOH A . B 2 HOH 85 85 85 HOH HOH A . B 2 HOH 86 86 86 HOH HOH A . B 2 HOH 87 87 87 HOH HOH A . B 2 HOH 88 88 88 HOH HOH A . B 2 HOH 89 89 89 HOH HOH A . B 2 HOH 90 90 90 HOH HOH A . B 2 HOH 91 91 91 HOH HOH A . B 2 HOH 92 92 92 HOH HOH A . B 2 HOH 93 93 93 HOH HOH A . B 2 HOH 94 94 94 HOH HOH A . B 2 HOH 95 95 95 HOH HOH A . B 2 HOH 96 96 96 HOH HOH A . B 2 HOH 97 97 97 HOH HOH A . B 2 HOH 98 98 98 HOH HOH A . B 2 HOH 99 99 99 HOH HOH A . B 2 HOH 100 100 100 HOH HOH A . B 2 HOH 101 101 101 HOH HOH A . B 2 HOH 102 102 102 HOH HOH A . B 2 HOH 103 103 103 HOH HOH A . B 2 HOH 104 104 104 HOH HOH A . B 2 HOH 105 105 105 HOH HOH A . B 2 HOH 106 106 106 HOH HOH A . B 2 HOH 107 107 107 HOH HOH A . B 2 HOH 108 108 108 HOH HOH A . B 2 HOH 109 109 109 HOH HOH A . B 2 HOH 110 110 110 HOH HOH A . B 2 HOH 111 111 111 HOH HOH A . B 2 HOH 112 112 112 HOH HOH A . B 2 HOH 113 113 113 HOH HOH A . B 2 HOH 114 114 114 HOH HOH A . B 2 HOH 115 115 115 HOH HOH A . B 2 HOH 116 116 116 HOH HOH A . B 2 HOH 117 117 117 HOH HOH A . B 2 HOH 118 118 118 HOH HOH A . B 2 HOH 119 119 119 HOH HOH A . B 2 HOH 120 120 120 HOH HOH A . B 2 HOH 121 121 121 HOH HOH A . B 2 HOH 122 122 122 HOH HOH A . B 2 HOH 123 123 123 HOH HOH A . B 2 HOH 124 124 124 HOH HOH A . B 2 HOH 125 125 125 HOH HOH A . B 2 HOH 126 126 126 HOH HOH A . B 2 HOH 127 127 127 HOH HOH A . B 2 HOH 128 128 128 HOH HOH A . B 2 HOH 129 129 129 HOH HOH A . B 2 HOH 130 130 130 HOH HOH A . B 2 HOH 131 131 131 HOH HOH A . B 2 HOH 132 132 132 HOH HOH A . B 2 HOH 133 133 133 HOH HOH A . B 2 HOH 134 134 134 HOH HOH A . B 2 HOH 135 135 135 HOH HOH A . B 2 HOH 136 136 136 HOH HOH A . B 2 HOH 137 137 137 HOH HOH A . B 2 HOH 138 138 138 HOH HOH A . B 2 HOH 139 139 139 HOH HOH A . B 2 HOH 140 140 140 HOH HOH A . B 2 HOH 141 141 141 HOH HOH A . B 2 HOH 142 142 142 HOH HOH A . B 2 HOH 143 143 143 HOH HOH A . B 2 HOH 144 144 144 HOH HOH A . B 2 HOH 145 145 145 HOH HOH A . B 2 HOH 146 146 146 HOH HOH A . B 2 HOH 147 147 147 HOH HOH A . B 2 HOH 148 148 148 HOH HOH A . B 2 HOH 149 149 149 HOH HOH A . B 2 HOH 150 150 150 HOH HOH A . B 2 HOH 151 151 151 HOH HOH A . B 2 HOH 152 152 152 HOH HOH A . B 2 HOH 153 153 153 HOH HOH A . B 2 HOH 154 154 154 HOH HOH A . B 2 HOH 155 155 155 HOH HOH A . B 2 HOH 156 156 156 HOH HOH A . B 2 HOH 157 157 157 HOH HOH A . B 2 HOH 158 158 158 HOH HOH A . B 2 HOH 159 159 159 HOH HOH A . B 2 HOH 160 160 160 HOH HOH A . B 2 HOH 161 161 161 HOH HOH A . B 2 HOH 162 162 162 HOH HOH A . B 2 HOH 163 163 163 HOH HOH A . B 2 HOH 164 164 164 HOH HOH A . B 2 HOH 165 165 165 HOH HOH A . B 2 HOH 166 166 166 HOH HOH A . B 2 HOH 167 167 167 HOH HOH A . B 2 HOH 168 168 168 HOH HOH A . B 2 HOH 169 169 169 HOH HOH A . B 2 HOH 170 170 170 HOH HOH A . B 2 HOH 171 171 171 HOH HOH A . B 2 HOH 172 172 172 HOH HOH A . B 2 HOH 173 173 173 HOH HOH A . B 2 HOH 174 174 174 HOH HOH A . B 2 HOH 175 175 175 HOH HOH A . B 2 HOH 176 176 176 HOH HOH A . B 2 HOH 177 177 177 HOH HOH A . B 2 HOH 178 178 178 HOH HOH A . B 2 HOH 179 179 179 HOH HOH A . B 2 HOH 180 180 180 HOH HOH A . B 2 HOH 181 181 181 HOH HOH A . B 2 HOH 182 182 182 HOH HOH A . B 2 HOH 183 183 183 HOH HOH A . B 2 HOH 184 184 184 HOH HOH A . B 2 HOH 185 185 185 HOH HOH A . B 2 HOH 186 186 186 HOH HOH A . B 2 HOH 187 187 187 HOH HOH A . B 2 HOH 188 188 188 HOH HOH A . B 2 HOH 189 189 189 HOH HOH A . B 2 HOH 190 190 190 HOH HOH A . B 2 HOH 191 191 191 HOH HOH A . B 2 HOH 192 192 192 HOH HOH A . B 2 HOH 193 193 193 HOH HOH A . B 2 HOH 194 194 194 HOH HOH A . B 2 HOH 195 195 195 HOH HOH A . B 2 HOH 196 196 196 HOH HOH A . B 2 HOH 197 197 197 HOH HOH A . B 2 HOH 198 198 198 HOH HOH A . B 2 HOH 199 199 199 HOH HOH A . B 2 HOH 200 200 200 HOH HOH A . B 2 HOH 201 201 201 HOH HOH A . B 2 HOH 202 202 202 HOH HOH A . B 2 HOH 203 203 203 HOH HOH A . B 2 HOH 204 204 204 HOH HOH A . B 2 HOH 205 205 205 HOH HOH A . B 2 HOH 206 206 206 HOH HOH A . B 2 HOH 207 207 207 HOH HOH A . B 2 HOH 208 208 208 HOH HOH A . B 2 HOH 209 209 209 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 91 A MSE 1317 ? MET SELENOMETHIONINE 2 A MSE 92 A MSE 1318 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2018-11-21 5 'Structure model' 1 4 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_audit_author.identifier_ORCID' 3 5 'Structure model' '_audit_author.identifier_ORCID' 4 5 'Structure model' '_citation_author.identifier_ORCID' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 HKL2Map . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 1312 ? ? 81.65 -14.27 2 1 ARG A 1312 ? ? 78.71 -10.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 1388 ? A THR 162 2 1 Y 1 A SER 1389 ? A SER 163 3 1 Y 1 A ASP 1390 ? A ASP 164 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #