HEADER LYASE 21-FEB-09 3GC2 TITLE 1.85 ANGSTROM CRYSTAL STRUCTURE OF O-SUCCINYLBENZOATE SYNTHASE FROM TITLE 2 SALMONELLA TYPHIMURIUM IN COMPLEX WITH SUCCINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-SUCCINYLBENZOATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OSB SYNTHASE, OSBS, 4-(2'-CARBOXYPHENYL)-4-OXYBUTYRIC ACID COMPND 5 SYNTHASE, O-SUCCINYLBENZOIC ACID SYNTHASE; COMPND 6 EC: 4.2.1.113; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: MENC, STM2306; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS O-SUCCINYLBENZOATE SYNTHASE, SUCCINIC ACID, IDP00994, LYASE, KEYWDS 2 MAGNESIUM, MENAQUINONE BIOSYNTHESIS, METAL-BINDING, STRUCTURAL KEYWDS 3 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 4 CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID),CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 4 (CSGID) REVDAT 5 01-NOV-17 3GC2 1 REMARK REVDAT 4 13-JUL-11 3GC2 1 VERSN REVDAT 3 27-OCT-09 3GC2 1 AUTHOR REVDAT 2 26-MAY-09 3GC2 1 REMARK REVDAT 1 10-MAR-09 3GC2 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.85 ANGSTROM CRYSTAL STRUCTURE OF O-SUCCINYLBENZOATE JRNL TITL 2 SYNTHASE FROM SALMONELLA TYPHIMURIUM IN COMPLEX WITH JRNL TITL 3 SUCCINIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 36310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2624 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.288 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2773 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1912 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3792 ; 1.370 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4654 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 3.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;31.711 ;23.252 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;10.507 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;12.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3170 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 1.079 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 684 ; 0.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2779 ; 1.812 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1054 ; 2.674 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1013 ; 4.330 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 58.9110 20.4373 3.0103 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.2796 REMARK 3 T33: 0.2406 T12: 0.0466 REMARK 3 T13: 0.0089 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.5653 L22: 1.9578 REMARK 3 L33: 1.0941 L12: 0.1961 REMARK 3 L13: -0.1324 L23: -0.8216 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: -0.1214 S13: -0.4392 REMARK 3 S21: 0.0780 S22: 0.0559 S23: -0.3291 REMARK 3 S31: 0.2048 S32: 0.2933 S33: 0.0668 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 56.6997 31.9404 1.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.1117 REMARK 3 T33: 0.0579 T12: -0.0152 REMARK 3 T13: -0.0217 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 5.1175 L22: 3.4555 REMARK 3 L33: 0.9466 L12: 0.8460 REMARK 3 L13: 0.5771 L23: 0.2517 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: -0.1096 S13: 0.3083 REMARK 3 S21: 0.0555 S22: 0.0892 S23: -0.2641 REMARK 3 S31: -0.1129 S32: 0.2247 S33: 0.0739 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4098 21.2964 6.6486 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.0960 REMARK 3 T33: 0.0197 T12: 0.0497 REMARK 3 T13: 0.0238 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.7696 L22: 2.4833 REMARK 3 L33: 1.9796 L12: -0.0939 REMARK 3 L13: -0.1267 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: -0.2154 S13: -0.1148 REMARK 3 S21: 0.2721 S22: 0.1204 S23: 0.0654 REMARK 3 S31: 0.0954 S32: 0.1694 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6748 1.0193 1.5747 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.0585 REMARK 3 T33: 0.1159 T12: -0.0071 REMARK 3 T13: 0.0979 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.0645 L22: 3.6193 REMARK 3 L33: 1.7737 L12: -1.2913 REMARK 3 L13: -1.0170 L23: 1.7271 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: -0.1381 S13: -0.1781 REMARK 3 S21: 0.3016 S22: -0.1599 S23: 0.0411 REMARK 3 S31: 0.3255 S32: -0.1764 S33: 0.0912 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2991 10.6616 -12.3599 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.0400 REMARK 3 T33: 0.0820 T12: -0.0084 REMARK 3 T13: 0.0645 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.1342 L22: 1.8990 REMARK 3 L33: 2.9247 L12: -0.4583 REMARK 3 L13: 0.1630 L23: 0.3459 REMARK 3 S TENSOR REMARK 3 S11: -0.1224 S12: 0.1334 S13: -0.2124 REMARK 3 S21: -0.2664 S22: -0.0575 S23: 0.1297 REMARK 3 S31: 0.2827 S32: -0.0331 S33: 0.1799 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0990 23.1543 2.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0413 REMARK 3 T33: 0.0559 T12: 0.0077 REMARK 3 T13: 0.0310 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.5483 L22: 1.7549 REMARK 3 L33: 1.1298 L12: -0.3196 REMARK 3 L13: 0.0821 L23: 0.1443 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: -0.1143 S13: -0.2628 REMARK 3 S21: 0.1129 S22: -0.0103 S23: 0.0322 REMARK 3 S31: 0.0211 S32: 0.0957 S33: 0.1401 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5631 18.8359 13.2653 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.3244 REMARK 3 T33: 0.1262 T12: 0.1048 REMARK 3 T13: -0.0294 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 4.1773 L22: 5.0103 REMARK 3 L33: 1.4920 L12: 0.5446 REMARK 3 L13: -0.3564 L23: 0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.2293 S12: -0.7813 S13: -0.4569 REMARK 3 S21: 0.5606 S22: 0.1571 S23: -0.3409 REMARK 3 S31: 0.0850 S32: 0.3985 S33: 0.0722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38286 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 27.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SUCCINIC ACID,1% PEG2000MME, 0.1M REMARK 280 HEPES (PH 7.0) , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.56000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 74.98400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.98400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.34000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.98400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 74.98400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.78000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 74.98400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.98400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.34000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 74.98400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.98400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.78000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -50.55 -121.94 REMARK 500 ASP A 213 -80.92 -137.56 REMARK 500 ILE A 300 -59.87 61.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00994 RELATED DB: TARGETDB DBREF 3GC2 A 1 320 UNP P58486 MENC_SALTY 1 320 SEQADV 3GC2 SER A -2 UNP P58486 EXPRESSION TAG SEQADV 3GC2 ASN A -1 UNP P58486 EXPRESSION TAG SEQADV 3GC2 ALA A 0 UNP P58486 EXPRESSION TAG SEQRES 1 A 323 SER ASN ALA MSE ARG SER ALA GLN VAL TYR ARG TRP GLN SEQRES 2 A 323 ILE PRO MSE ASP ALA GLY VAL VAL LEU ARG ASP ARG ARG SEQRES 3 A 323 LEU LYS THR ARG ASP GLY LEU TYR VAL CYS LEU ARG ASP SEQRES 4 A 323 GLY GLU ARG GLU GLY TRP GLY GLU ILE SER PRO LEU PRO SEQRES 5 A 323 GLY PHE SER GLN GLU THR TRP GLU GLU ALA GLN THR ALA SEQRES 6 A 323 LEU LEU THR TRP VAL ASN ASP TRP LEU GLN GLY SER GLU SEQRES 7 A 323 GLY LEU PRO GLU MSE PRO SER VAL ALA PHE GLY ALA SER SEQRES 8 A 323 CYS ALA LEU ALA GLU LEU THR GLY VAL LEU PRO GLU ALA SEQRES 9 A 323 ALA ASP TYR ARG ALA ALA PRO LEU CYS THR GLY ASP PRO SEQRES 10 A 323 ASP ASP LEU VAL LEU ARG LEU ALA ASP MSE PRO GLY GLU SEQRES 11 A 323 LYS ILE ALA LYS VAL LYS VAL GLY LEU TYR GLU ALA VAL SEQRES 12 A 323 ARG ASP GLY MSE VAL VAL ASN LEU LEU LEU GLU ALA ILE SEQRES 13 A 323 PRO ASP LEU HIS LEU ARG LEU ASP ALA ASN ARG ALA TRP SEQRES 14 A 323 THR PRO LEU LYS ALA GLN GLN PHE ALA LYS TYR VAL ASN SEQRES 15 A 323 PRO ASP TYR ARG ALA ARG ILE ALA PHE LEU GLU GLU PRO SEQRES 16 A 323 CYS LYS THR ARG ASP ASP SER ARG ALA PHE ALA ARG GLU SEQRES 17 A 323 THR GLY ILE ALA ILE ALA TRP ASP GLU SER LEU ARG GLU SEQRES 18 A 323 ALA ASP PHE THR PHE GLU ALA GLU GLU GLY VAL ARG ALA SEQRES 19 A 323 VAL VAL ILE LYS PRO THR LEU THR GLY SER LEU ASP LYS SEQRES 20 A 323 VAL ARG GLU GLN VAL ALA ALA ALA HIS ALA LEU GLY LEU SEQRES 21 A 323 THR ALA VAL ILE SER SER SER ILE GLU SER SER LEU GLY SEQRES 22 A 323 LEU THR GLN LEU ALA ARG ILE ALA ALA TRP LEU THR PRO SEQRES 23 A 323 GLY THR LEU PRO GLY LEU ASP THR LEU HIS LEU MSE GLN SEQRES 24 A 323 ALA GLN GLN ILE ARG PRO TRP PRO GLY SER ALA LEU PRO SEQRES 25 A 323 CYS LEU LYS ARG GLU GLU LEU GLU ARG LEU LEU MODRES 3GC2 MSE A 1 MET SELENOMETHIONINE MODRES 3GC2 MSE A 13 MET SELENOMETHIONINE MODRES 3GC2 MSE A 80 MET SELENOMETHIONINE MODRES 3GC2 MSE A 124 MET SELENOMETHIONINE MODRES 3GC2 MSE A 144 MET SELENOMETHIONINE MODRES 3GC2 MSE A 295 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 13 8 HET MSE A 80 16 HET MSE A 124 8 HET MSE A 144 8 HET MSE A 295 8 HET SIN A 400 8 HET SIN A 401 16 HET EPE A 402 15 HET NA A 321 1 HET NA A 322 1 HET CL A 323 1 HET CL A 324 2 HETNAM MSE SELENOMETHIONINE HETNAM SIN SUCCINIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EPE HEPES FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SIN 2(C4 H6 O4) FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 NA 2(NA 1+) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *316(H2 O) HELIX 1 1 THR A 55 GLN A 72 1 18 HELIX 2 2 MSE A 80 THR A 95 1 16 HELIX 3 3 ASP A 113 ASP A 123 1 11 HELIX 4 4 GLU A 138 ILE A 153 1 16 HELIX 5 5 THR A 167 TYR A 177 1 11 HELIX 6 6 ASN A 179 ALA A 184 1 6 HELIX 7 7 THR A 195 GLY A 207 1 13 HELIX 8 8 ASP A 213 GLU A 218 5 6 HELIX 9 9 LYS A 235 GLY A 240 1 6 HELIX 10 10 SER A 241 LEU A 255 1 15 HELIX 11 11 SER A 267 THR A 282 1 16 HELIX 12 12 THR A 291 MSE A 295 5 5 HELIX 13 13 LYS A 312 LEU A 316 5 5 SHEET 1 A 4 ARG A 39 ILE A 45 0 SHEET 2 A 4 THR A 26 ASP A 36 -1 N LEU A 34 O GLY A 41 SHEET 3 A 4 ARG A 2 PRO A 12 -1 N ILE A 11 O ARG A 27 SHEET 4 A 4 GLU A 317 LEU A 320 -1 O LEU A 319 N VAL A 6 SHEET 1 B 6 LYS A 128 LYS A 133 0 SHEET 2 B 6 LEU A 156 ASP A 161 1 O ARG A 159 N ALA A 130 SHEET 3 B 6 ILE A 186 GLU A 190 1 O GLU A 190 N LEU A 160 SHEET 4 B 6 ILE A 210 TRP A 212 1 O ALA A 211 N LEU A 189 SHEET 5 B 6 VAL A 229 ILE A 234 1 O ARG A 230 N ILE A 210 SHEET 6 B 6 THR A 258 ILE A 261 1 O VAL A 260 N ILE A 234 SHEET 1 C 2 GLN A 298 GLN A 299 0 SHEET 2 C 2 CYS A 310 LEU A 311 1 O LEU A 311 N GLN A 298 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C PRO A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N ASP A 14 1555 1555 1.33 LINK C AGLU A 79 N AMSE A 80 1555 1555 1.33 LINK C BGLU A 79 N BMSE A 80 1555 1555 1.34 LINK C AMSE A 80 N PRO A 81 1555 1555 1.35 LINK C BMSE A 80 N PRO A 81 1555 1555 1.34 LINK C ASP A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N PRO A 125 1555 1555 1.35 LINK C GLY A 143 N MSE A 144 1555 1555 1.34 LINK C MSE A 144 N VAL A 145 1555 1555 1.33 LINK C LEU A 294 N MSE A 295 1555 1555 1.34 LINK C MSE A 295 N GLN A 296 1555 1555 1.33 SITE 1 AC1 12 LYS A 131 LYS A 133 ASP A 161 LYS A 235 SITE 2 AC1 12 SER A 262 SER A 263 GLY A 288 HOH A 410 SITE 3 AC1 12 HOH A 587 HOH A 596 HOH A 597 HOH A 634 SITE 1 AC2 9 GLU A 40 GLU A 93 GLU A 100 ARG A 276 SITE 2 AC2 9 ARG A 301 NA A 322 HOH A 423 HOH A 493 SITE 3 AC2 9 HOH A 592 SITE 1 AC3 8 GLU A 127 ILE A 129 HIS A 157 ARG A 159 SITE 2 AC3 8 ALA A 187 HOH A 422 HOH A 586 HOH A 601 SITE 1 AC4 6 ASP A 161 ASN A 163 GLU A 190 ASP A 213 SITE 2 AC4 6 HOH A 388 HOH A 410 SITE 1 AC5 6 GLU A 40 GLU A 93 SIN A 401 HOH A 590 SITE 2 AC5 6 HOH A 614 HOH A 642 SITE 1 AC6 3 ARG A 8 GLN A 60 GLU A 138 SITE 1 AC7 3 ILE A 300 ARG A 313 HOH A 438 CRYST1 149.968 149.968 39.120 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025562 0.00000