HEADER ENDOCYTOSIS 21-FEB-09 3GC3 TITLE CRYSTAL STRUCTURE OF ARRESTIN2S AND CLATHRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-ARRESTIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARRESTIN BETA-1,ARRESTIN-2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: WD DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: ARRB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: CATTLE; SOURCE 13 ORGANISM_TAXID: 9913; SOURCE 14 GENE: CLTC; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN-PROTEIN COMPLEX, PHOSPHOPROTEIN, SENSORY TRANSDUCTION, COATED KEYWDS 2 PIT, CYTOPLASMIC VESICLE, MEMBRANE, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.C.WILLIAMS,D.S.KANG REVDAT 5 20-SEP-23 3GC3 1 REMARK REVDAT 4 21-DEC-22 3GC3 1 COMPND SOURCE DBREF SEQADV REVDAT 3 18-SEP-13 3GC3 1 REMARK VERSN REVDAT 2 03-NOV-09 3GC3 1 JRNL REVDAT 1 25-AUG-09 3GC3 0 JRNL AUTH D.S.KANG,R.C.KERN,M.A.PUTHENVEEDU,M.VON ZASTROW, JRNL AUTH 2 J.C.WILLIAMS,J.L.BENOVIC JRNL TITL STRUCTURE OF AN ARRESTIN2-CLATHRIN COMPLEX REVEALS A NOVEL JRNL TITL 2 CLATHRIN BINDING DOMAIN THAT MODULATES RECEPTOR TRAFFICKING. JRNL REF J.BIOL.CHEM. V. 284 29860 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19710023 JRNL DOI 10.1074/JBC.M109.023366 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 58019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5528 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7492 ; 2.633 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 685 ; 8.495 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;38.900 ;24.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 960 ;16.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.140 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 861 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4124 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3457 ; 1.689 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5614 ; 2.961 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2071 ; 4.199 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1878 ; 6.639 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1G4M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS_TRIS PROPANE 4 -4.5 M REMARK 280 AMMONIUM ACETATE 4.5% ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.42850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.75250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.08650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.75250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.42850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.08650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 44 REMARK 465 PRO A 45 REMARK 465 GLU A 46 REMARK 465 TYR A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 GLU A 50 REMARK 465 ARG A 65 REMARK 465 GLU A 66 REMARK 465 ASP A 67 REMARK 465 LEU A 68 REMARK 465 ASP A 69 REMARK 465 VAL A 70 REMARK 465 LEU A 71 REMARK 465 ALA A 90 REMARK 465 PRO A 91 REMARK 465 GLU A 92 REMARK 465 ASP A 93 REMARK 465 LYS A 94 REMARK 465 PRO A 131 REMARK 465 GLY A 132 REMARK 465 PRO A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 THR A 136 REMARK 465 GLY A 137 REMARK 465 LYS A 138 REMARK 465 ASN A 280 REMARK 465 ASN A 281 REMARK 465 ARG A 282 REMARK 465 GLU A 283 REMARK 465 GLU A 351 REMARK 465 GLU A 352 REMARK 465 PRO A 353 REMARK 465 PRO A 354 REMARK 465 HIS A 355 REMARK 465 ARG A 356 REMARK 465 GLU A 357 REMARK 465 VAL A 358 REMARK 465 PRO A 359 REMARK 465 GLU A 360 REMARK 465 HIS A 361 REMARK 465 GLU A 362 REMARK 465 THR A 363 REMARK 465 PRO A 364 REMARK 465 VAL A 365 REMARK 465 THR A 373A REMARK 465 ASN A 373B REMARK 465 ASP A 373C REMARK 465 ASP A 373D REMARK 465 ASP A 373E REMARK 465 ARG A 385 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 44 REMARK 465 GLU B 46 REMARK 465 GLN B 47 REMARK 465 GLN B 174 REMARK 465 ASN B 175 REMARK 465 LEU B 357 REMARK 465 ALA B 358 REMARK 465 GLY B 359 REMARK 465 ALA B 360 REMARK 465 GLU B 361 REMARK 465 GLU B 362 REMARK 465 LEU B 363 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 ASP A 366 CB CG OD1 OD2 REMARK 470 ASP A 373 CB CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 107 CG CD CE NZ REMARK 480 ASN A 153 CG OD1 ND2 REMARK 480 GLU A 156 CD OE1 OE2 REMARK 480 ARG A 177 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 206 CG CD OE1 OE2 REMARK 480 LYS A 229 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 265 O HOH B 410 1.95 REMARK 500 NH1 ARG B 8 NE2 GLN B 10 1.97 REMARK 500 NZ LYS A 147 CD1 ILE A 158 2.06 REMARK 500 O HOH A 451 O HOH A 500 2.14 REMARK 500 ND2 ASN A 299 O HOH A 424 2.18 REMARK 500 O HIS A 159 N ARG A 161 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 156 CG GLU A 156 CD -0.097 REMARK 500 CYS B 39 CB CYS B 39 SG -0.130 REMARK 500 VAL B 119 CB VAL B 119 CG1 -0.146 REMARK 500 VAL B 139 CB VAL B 139 CG2 0.149 REMARK 500 VAL B 272 CB VAL B 272 CG2 -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 188 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 LEU B 166 CA - CB - CG ANGL. DEV. = -19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 -49.68 73.00 REMARK 500 THR A 74 -15.03 -141.85 REMARK 500 PHE A 80 132.72 -172.90 REMARK 500 LYS A 107 24.61 -79.94 REMARK 500 LEU A 108 -37.83 -153.77 REMARK 500 ALA A 151 149.30 -176.03 REMARK 500 LYS A 160 56.45 -50.18 REMARK 500 ARG A 161 -46.15 -149.98 REMARK 500 MET A 192 -5.45 68.49 REMARK 500 PHE A 244 -66.21 73.46 REMARK 500 CYS A 251 122.86 -175.68 REMARK 500 ARG A 307 152.51 -48.47 REMARK 500 ARG A 312 43.64 -89.60 REMARK 500 GLU A 313 -45.69 -145.23 REMARK 500 ASP B 57 56.86 -163.84 REMARK 500 ASN B 60 73.46 -118.05 REMARK 500 GLU B 94 -72.87 -45.77 REMARK 500 LYS B 96 51.78 34.30 REMARK 500 SER B 115 -158.94 -158.28 REMARK 500 ASN B 117 17.37 -154.12 REMARK 500 ALA B 172 107.37 -47.61 REMARK 500 THR B 238 126.70 -39.24 REMARK 500 ILE B 303 98.76 -66.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 290 GLY A 291 -146.97 REMARK 500 PRO B 253 PRO B 254 147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 156 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GD1 RELATED DB: PDB DBREF 3GC3 A 1 385 UNP P17870 ARRB1_BOVIN 1 385 DBREF 3GC3 B 1 363 UNP P49951 CLH1_BOVIN 1 363 SEQRES 1 A 385 MET GLY ASP LYS GLY THR ARG VAL PHE LYS LYS ALA SER SEQRES 2 A 385 PRO ASN GLY LYS LEU THR VAL TYR LEU GLY LYS ARG ASP SEQRES 3 A 385 PHE VAL ASP HIS ILE ASP LEU VAL GLU PRO VAL ASP GLY SEQRES 4 A 385 VAL VAL LEU VAL ASP PRO GLU TYR LEU LYS GLU ARG ARG SEQRES 5 A 385 VAL TYR VAL THR LEU THR CYS ALA PHE ARG TYR GLY ARG SEQRES 6 A 385 GLU ASP LEU ASP VAL LEU GLY LEU THR PHE ARG LYS ASP SEQRES 7 A 385 LEU PHE VAL ALA ASN VAL GLN SER PHE PRO PRO ALA PRO SEQRES 8 A 385 GLU ASP LYS LYS PRO LEU THR ARG LEU GLN GLU ARG LEU SEQRES 9 A 385 ILE LYS LYS LEU GLY GLU HIS ALA TYR PRO PHE THR PHE SEQRES 10 A 385 GLU ILE PRO PRO ASN LEU PRO CYS SER VAL THR LEU GLN SEQRES 11 A 385 PRO GLY PRO GLU ASP THR GLY LYS ALA CYS GLY VAL ASP SEQRES 12 A 385 TYR GLU VAL LYS ALA PHE CYS ALA GLU ASN LEU GLU GLU SEQRES 13 A 385 LYS ILE HIS LYS ARG ASN SER VAL ARG LEU VAL ILE ARG SEQRES 14 A 385 LYS VAL GLN TYR ALA PRO GLU ARG PRO GLY PRO GLN PRO SEQRES 15 A 385 THR ALA GLU THR THR ARG GLN PHE LEU MET SER ASP LYS SEQRES 16 A 385 PRO LEU HIS LEU GLU ALA SER LEU ASP LYS GLU ILE TYR SEQRES 17 A 385 TYR HIS GLY GLU PRO ILE SER VAL ASN VAL HIS VAL THR SEQRES 18 A 385 ASN ASN THR ASN LYS THR VAL LYS LYS ILE LYS ILE SER SEQRES 19 A 385 VAL ARG GLN TYR ALA ASP ILE CYS LEU PHE ASN THR ALA SEQRES 20 A 385 GLN TYR LYS CYS PRO VAL ALA MET GLU GLU ALA ASP ASP SEQRES 21 A 385 THR VAL ALA PRO SER SER THR PHE CYS LYS VAL TYR THR SEQRES 22 A 385 LEU THR PRO PHE LEU ALA ASN ASN ARG GLU LYS ARG GLY SEQRES 23 A 385 LEU ALA LEU ASP GLY LYS LEU LYS HIS GLU ASP THR ASN SEQRES 24 A 385 LEU ALA SER SER THR LEU LEU ARG GLU GLY ALA ASN ARG SEQRES 25 A 385 GLU ILE LEU GLY ILE ILE VAL SER TYR LYS VAL LYS VAL SEQRES 26 A 385 LYS LEU VAL VAL SER ARG GLY GLY ASP VAL ALA VAL GLU SEQRES 27 A 385 LEU PRO PHE THR LEU MET HIS PRO LYS PRO LYS GLU GLU SEQRES 28 A 385 PRO PRO HIS ARG GLU VAL PRO GLU HIS GLU THR PRO VAL SEQRES 29 A 385 ASP THR ASN LEU ILE GLU LEU ASP THR ASN ASP ASP ASP SEQRES 30 A 385 ILE VAL PHE GLU ASP PHE ALA ARG SEQRES 1 B 363 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 B 363 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 B 363 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 B 363 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 B 363 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 B 363 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 B 363 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 B 363 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 B 363 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 B 363 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 B 363 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 B 363 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 B 363 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 B 363 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 B 363 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 B 363 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 B 363 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 B 363 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 B 363 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 B 363 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 B 363 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 B 363 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 B 363 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 B 363 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 B 363 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 B 363 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 B 363 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 B 363 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU FORMUL 3 HOH *276(H2 O) HELIX 1 1 THR A 98 LYS A 107 1 10 HELIX 2 2 GLN B 16 GLY B 19 5 4 HELIX 3 3 ASN B 21 ILE B 25 5 5 HELIX 4 4 HIS B 145 ALA B 149 5 5 HELIX 5 5 GLU B 310 ALA B 313 5 4 HELIX 6 6 ASN B 333 VAL B 341 1 9 HELIX 7 7 ASN B 344 ASN B 356 1 13 SHEET 1 A 5 ALA A 112 PHE A 117 0 SHEET 2 A 5 VAL A 37 LEU A 42 -1 N GLY A 39 O PHE A 115 SHEET 3 A 5 THR A 19 LEU A 22 -1 N THR A 19 O LEU A 42 SHEET 4 A 5 ARG A 7 ALA A 12 -1 N PHE A 9 O LEU A 22 SHEET 5 A 5 VAL A 379 ASP A 382 1 O GLU A 381 N LYS A 10 SHEET 1 B 5 ASP A 26 ASP A 29 0 SHEET 2 B 5 VAL A 164 GLN A 172 1 O ARG A 169 N PHE A 27 SHEET 3 B 5 CYS A 140 ALA A 151 -1 N VAL A 146 O LEU A 166 SHEET 4 B 5 ARG A 52 TYR A 63 -1 N THR A 56 O LYS A 147 SHEET 5 B 5 PHE A 75 PHE A 87 -1 O LEU A 79 N CYS A 59 SHEET 1 C 5 ASP A 26 ASP A 29 0 SHEET 2 C 5 VAL A 164 GLN A 172 1 O ARG A 169 N PHE A 27 SHEET 3 C 5 CYS A 140 ALA A 151 -1 N VAL A 146 O LEU A 166 SHEET 4 C 5 VAL A 127 LEU A 129 -1 N LEU A 129 O CYS A 140 SHEET 5 C 5 ALA A 288 LEU A 289 -1 O LEU A 289 N THR A 128 SHEET 1 D 4 THR A 183 GLN A 189 0 SHEET 2 D 4 PRO A 196 LEU A 203 -1 O LEU A 199 N THR A 186 SHEET 3 D 4 ILE A 214 ASN A 222 -1 O HIS A 219 N GLU A 200 SHEET 4 D 4 SER A 266 LEU A 274 -1 O LEU A 274 N ILE A 214 SHEET 1 E 5 ILE A 207 TYR A 209 0 SHEET 2 E 5 VAL A 335 MET A 344 1 O MET A 344 N TYR A 208 SHEET 3 E 5 ILE A 317 VAL A 329 -1 N LEU A 327 O VAL A 335 SHEET 4 E 5 VAL A 228 ILE A 241 -1 N LYS A 232 O LYS A 326 SHEET 5 E 5 ALA A 247 ALA A 258 -1 O ALA A 258 N ILE A 231 SHEET 1 F 4 ILE B 7 GLN B 14 0 SHEET 2 F 4 GLN B 323 VAL B 329 -1 O VAL B 324 N LEU B 13 SHEET 3 F 4 GLY B 314 ASN B 319 -1 N GLY B 317 O LEU B 325 SHEET 4 F 4 ILE B 303 HIS B 309 -1 N ALA B 307 O ILE B 316 SHEET 1 G 4 LEU B 30 SER B 34 0 SHEET 2 G 4 PHE B 37 GLU B 42 -1 O CYS B 39 N THR B 31 SHEET 3 G 4 GLN B 49 ASP B 54 -1 O ILE B 53 N ILE B 38 SHEET 4 G 4 ILE B 62 PRO B 65 -1 O ARG B 64 N VAL B 50 SHEET 1 H 4 SER B 70 MET B 73 0 SHEET 2 H 4 VAL B 79 ALA B 84 -1 O ALA B 81 N ILE B 72 SHEET 3 H 4 THR B 87 ASN B 92 -1 O GLN B 89 N LEU B 82 SHEET 4 H 4 SER B 97 THR B 103 -1 O HIS B 102 N LEU B 88 SHEET 1 I 4 VAL B 108 TRP B 113 0 SHEET 2 I 4 THR B 118 THR B 123 -1 O ALA B 120 N LYS B 112 SHEET 3 I 4 ALA B 126 SER B 131 -1 O TRP B 130 N VAL B 119 SHEET 4 I 4 VAL B 139 ASP B 143 -1 O VAL B 139 N HIS B 129 SHEET 1 J 4 GLN B 152 THR B 158 0 SHEET 2 J 4 TRP B 164 SER B 171 -1 O LEU B 166 N ARG B 157 SHEET 3 J 4 VAL B 178 SER B 185 -1 O TYR B 184 N LEU B 165 SHEET 4 J 4 VAL B 190 ILE B 194 -1 O ILE B 194 N MET B 181 SHEET 1 K 4 ALA B 198 PHE B 204 0 SHEET 2 K 4 SER B 213 GLY B 222 -1 O LEU B 215 N ALA B 202 SHEET 3 K 4 GLY B 225 GLU B 232 -1 O ILE B 231 N PHE B 216 SHEET 4 K 4 LYS B 246 ASP B 249 -1 O LYS B 246 N ILE B 230 SHEET 1 L 4 PRO B 261 SER B 267 0 SHEET 2 L 4 VAL B 272 THR B 277 -1 O ILE B 276 N VAL B 262 SHEET 3 L 4 TYR B 281 ASP B 286 -1 O TYR B 285 N VAL B 273 SHEET 4 L 4 CYS B 292 ARG B 297 -1 O ASN B 296 N ILE B 282 CISPEP 1 PHE A 87 PRO A 88 0 -8.28 CRYST1 72.857 126.173 129.505 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007722 0.00000