HEADER TRANSCRIPTION FACTOR 13-MAR-98 3GCC TITLE SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, 46 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATERF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GCC-BOX BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: ATERF1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAF104; SOURCE 11 OTHER_DETAILS: DNA-BINDING DOMAIN OF ATERF1 KEYWDS TRANSCRIPTION FACTOR, ETHLENE INDUCIBLE EXPDTA SOLUTION NMR NUMMDL 46 AUTHOR M.D.ALLEN,K.YAMASAKI,M.OHME-TAKAGI,M.TATENO,M.SUZUKI REVDAT 3 16-MAR-22 3GCC 1 REMARK REVDAT 2 24-FEB-09 3GCC 1 VERSN REVDAT 1 23-MAR-99 3GCC 0 JRNL AUTH M.D.ALLEN,K.YAMASAKI,M.OHME-TAKAGI,M.TATENO,M.SUZUKI JRNL TITL A NOVEL MODE OF DNA RECOGNITION BY A BETA-SHEET REVEALED BY JRNL TITL 2 THE SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN IN JRNL TITL 3 COMPLEX WITH DNA. JRNL REF EMBO J. V. 17 5484 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9736626 JRNL DOI 10.1093/EMBOJ/17.18.5484 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE REMARK 210 REMARK 4 REMARK 4 3GCC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178979. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 90 MM REMARK 210 PRESSURE : 1 ATMOSPHERE REMARK 210 SAMPLE CONTENTS : POTASIUM PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; 1H-15N REMARK 210 HSQC; 3D 1H-15N NOESY-HMQC; 3D REMARK 210 1H-15N TOCSY-HMQC; 13C; 15N- REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX750; DMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING PROTOCOL IN REMARK 210 X-PLOR 3.1 WAS CARRIED OUT TO REMARK 210 OBTAIN 46 STRUCTURES. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 46 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 46 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO NOE VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: SIGNALS DUE TO PROTEINS WERE OBTAINED BY NOESY, TOCSY, DQF REMARK 210 -COSY FOR UNLABELED SAMPLE AND 1H-15N HSQC, 3D 1H-15N NOESY-HMQC REMARK 210 AND 3D 1H-15N TOCSY-HMQC FOR THE SAMPLE WITH 15N-LABELED PROTEIN. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-46 REMARK 465 RES C SSSEQI REMARK 465 ALA A 141 REMARK 465 LYS A 142 REMARK 465 GLY A 143 REMARK 465 ASN A 207 REMARK 465 SER A 208 REMARK 465 GLY A 209 REMARK 465 GLU A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 146 150.60 -48.38 REMARK 500 1 LYS A 166 55.61 -100.12 REMARK 500 1 ARG A 197 91.08 58.57 REMARK 500 1 LEU A 204 -73.63 174.51 REMARK 500 2 HIS A 145 -165.00 -178.30 REMARK 500 2 ARG A 147 31.01 -84.52 REMARK 500 2 LYS A 156 -169.24 -126.44 REMARK 500 2 LYS A 166 37.82 -91.40 REMARK 500 2 SER A 196 149.05 61.01 REMARK 500 2 ARG A 197 120.92 61.76 REMARK 500 2 ALA A 198 153.59 173.31 REMARK 500 2 ARG A 205 148.36 166.09 REMARK 500 3 HIS A 145 136.23 62.18 REMARK 500 3 ASN A 167 47.22 70.39 REMARK 500 3 TRP A 172 90.65 -61.87 REMARK 500 3 THR A 175 -177.22 -68.24 REMARK 500 3 SER A 196 -148.22 -63.96 REMARK 500 3 ARG A 197 139.72 -39.99 REMARK 500 4 HIS A 145 133.77 -173.10 REMARK 500 4 LYS A 166 57.54 -119.09 REMARK 500 4 ASN A 167 26.01 49.49 REMARK 500 4 SER A 196 -176.66 50.53 REMARK 500 4 ARG A 197 101.61 -43.70 REMARK 500 4 LEU A 199 94.52 39.35 REMARK 500 5 ARG A 147 35.02 -81.59 REMARK 500 5 ALA A 169 87.84 67.18 REMARK 500 5 ARG A 197 118.79 70.46 REMARK 500 6 HIS A 145 176.48 -55.20 REMARK 500 6 ILE A 161 141.09 -174.76 REMARK 500 6 LYS A 166 59.83 -98.33 REMARK 500 6 ALA A 169 95.33 63.27 REMARK 500 6 ARG A 170 157.11 -45.28 REMARK 500 6 SER A 196 102.19 80.91 REMARK 500 6 ARG A 197 -96.72 64.71 REMARK 500 6 ALA A 198 145.21 63.08 REMARK 500 6 ARG A 205 162.58 65.90 REMARK 500 7 HIS A 145 125.19 176.39 REMARK 500 7 LYS A 166 39.85 -93.89 REMARK 500 7 SER A 196 -78.04 -108.02 REMARK 500 7 LEU A 204 -73.68 -89.64 REMARK 500 7 ARG A 205 -165.50 49.73 REMARK 500 8 ARG A 147 87.94 -65.14 REMARK 500 8 LYS A 166 40.56 -95.90 REMARK 500 8 SER A 196 142.57 61.56 REMARK 500 8 ARG A 197 -96.18 43.06 REMARK 500 8 ALA A 198 168.70 65.29 REMARK 500 9 HIS A 145 102.50 73.24 REMARK 500 9 ASN A 167 43.99 75.11 REMARK 500 9 ARG A 197 104.02 54.94 REMARK 500 9 LEU A 204 89.49 60.59 REMARK 500 REMARK 500 THIS ENTRY HAS 260 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 147 0.30 SIDE CHAIN REMARK 500 1 ARG A 150 0.31 SIDE CHAIN REMARK 500 1 ARG A 152 0.31 SIDE CHAIN REMARK 500 1 ARG A 162 0.11 SIDE CHAIN REMARK 500 1 ARG A 170 0.28 SIDE CHAIN REMARK 500 1 ARG A 188 0.27 SIDE CHAIN REMARK 500 1 ARG A 192 0.26 SIDE CHAIN REMARK 500 1 ARG A 194 0.32 SIDE CHAIN REMARK 500 1 ARG A 197 0.29 SIDE CHAIN REMARK 500 1 ARG A 205 0.24 SIDE CHAIN REMARK 500 2 ARG A 147 0.26 SIDE CHAIN REMARK 500 2 ARG A 150 0.32 SIDE CHAIN REMARK 500 2 ARG A 152 0.24 SIDE CHAIN REMARK 500 2 ARG A 162 0.12 SIDE CHAIN REMARK 500 2 ARG A 170 0.15 SIDE CHAIN REMARK 500 2 ARG A 188 0.12 SIDE CHAIN REMARK 500 2 ARG A 192 0.31 SIDE CHAIN REMARK 500 2 ARG A 194 0.30 SIDE CHAIN REMARK 500 2 ARG A 197 0.31 SIDE CHAIN REMARK 500 2 ARG A 205 0.24 SIDE CHAIN REMARK 500 3 ARG A 147 0.32 SIDE CHAIN REMARK 500 3 ARG A 150 0.10 SIDE CHAIN REMARK 500 3 ARG A 152 0.31 SIDE CHAIN REMARK 500 3 ARG A 162 0.31 SIDE CHAIN REMARK 500 3 ARG A 170 0.28 SIDE CHAIN REMARK 500 3 ARG A 188 0.25 SIDE CHAIN REMARK 500 3 ARG A 192 0.18 SIDE CHAIN REMARK 500 3 ARG A 194 0.13 SIDE CHAIN REMARK 500 3 ARG A 197 0.30 SIDE CHAIN REMARK 500 3 ARG A 205 0.24 SIDE CHAIN REMARK 500 4 ARG A 147 0.28 SIDE CHAIN REMARK 500 4 ARG A 150 0.32 SIDE CHAIN REMARK 500 4 ARG A 152 0.14 SIDE CHAIN REMARK 500 4 ARG A 162 0.31 SIDE CHAIN REMARK 500 4 ARG A 170 0.31 SIDE CHAIN REMARK 500 4 ARG A 188 0.32 SIDE CHAIN REMARK 500 4 ARG A 192 0.20 SIDE CHAIN REMARK 500 4 ARG A 194 0.25 SIDE CHAIN REMARK 500 4 ARG A 197 0.27 SIDE CHAIN REMARK 500 4 ARG A 205 0.11 SIDE CHAIN REMARK 500 5 ARG A 147 0.18 SIDE CHAIN REMARK 500 5 ARG A 150 0.32 SIDE CHAIN REMARK 500 5 ARG A 152 0.30 SIDE CHAIN REMARK 500 5 ARG A 162 0.27 SIDE CHAIN REMARK 500 5 ARG A 170 0.32 SIDE CHAIN REMARK 500 5 ARG A 188 0.24 SIDE CHAIN REMARK 500 5 ARG A 192 0.27 SIDE CHAIN REMARK 500 5 ARG A 194 0.17 SIDE CHAIN REMARK 500 5 ARG A 197 0.27 SIDE CHAIN REMARK 500 5 ARG A 205 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 443 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3GCC A 141 210 UNP O80337 ERF1A_ARATH 141 210 SEQRES 1 A 70 ALA LYS GLY LYS HIS TYR ARG GLY VAL ARG GLN ARG PRO SEQRES 2 A 70 TRP GLY LYS PHE ALA ALA GLU ILE ARG ASP PRO ALA LYS SEQRES 3 A 70 ASN GLY ALA ARG VAL TRP LEU GLY THR PHE GLU THR ALA SEQRES 4 A 70 GLU ASP ALA ALA LEU ALA TYR ASP ARG ALA ALA PHE ARG SEQRES 5 A 70 MET ARG GLY SER ARG ALA LEU LEU ASN PHE PRO LEU ARG SEQRES 6 A 70 VAL ASN SER GLY GLU HELIX 1 1 ALA A 179 ARG A 192 1 14 SHEET 1 A 3 VAL A 149 GLN A 151 0 SHEET 2 A 3 PHE A 157 ASP A 163 -1 N ALA A 158 O ARG A 150 SHEET 3 A 3 ALA A 169 PHE A 176 -1 N PHE A 176 O PHE A 157 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1