HEADER TOXIN/INHIBITOR 21-FEB-09 3GCD TITLE STRUCTURE OF THE V. CHOLERAE RTX CYSTEINE PROTEASE DOMAIN IN COMPLEX TITLE 2 WITH AN AZA-LEUCINE PEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RTX TOXIN RTXA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 3442-3650; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: V. CHOLERAE 01 BIOVAR ELTOR STR. N16961; SOURCE 5 GENE: RTXA, VC1451, VC_1451; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS V. CHOLERAE, REPEATS-IN-TOXIN, MARTX, CYSTEINE PROTEASE, INOSITOL KEYWDS 2 HEXAKISPHOSPHATE, AZA-PEPTIDE, AZA-LEU, TOXIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.LUPARDUS,K.C.GARCIA,A.SHEN,M.BOGYO REVDAT 6 06-SEP-23 3GCD 1 REMARK REVDAT 5 14-OCT-20 3GCD 1 REMARK HETSYN LINK REVDAT 4 13-JUL-11 3GCD 1 VERSN REVDAT 3 21-JUL-09 3GCD 1 JRNL REVDAT 2 09-JUN-09 3GCD 1 LINK REVDAT 1 26-MAY-09 3GCD 0 JRNL AUTH A.SHEN,P.J.LUPARDUS,V.E.ALBROW,A.GUZZETTA,J.C.POWERS, JRNL AUTH 2 K.C.GARCIA,M.BOGYO JRNL TITL MECHANISTIC AND STRUCTURAL INSIGHTS INTO THE PROTEOLYTIC JRNL TITL 2 ACTIVATION OF VIBRIO CHOLERAE MARTX TOXIN. JRNL REF NAT.CHEM.BIOL. V. 5 469 2009 JRNL REFN ISSN 1552-4450 JRNL PMID 19465933 JRNL DOI 10.1038/NCHEMBIO.178 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 29632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 316 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.55000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.823 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.236 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6632 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9004 ; 1.303 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 808 ; 4.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;42.467 ;25.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1084 ;15.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 984 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4984 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4036 ; 0.900 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6452 ; 1.668 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2596 ; 1.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2552 ; 2.749 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 999 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3689 19.5629 -61.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0041 REMARK 3 T33: 0.0022 T12: -0.0006 REMARK 3 T13: 0.0080 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2770 L22: 0.3738 REMARK 3 L33: 0.1681 L12: 0.0510 REMARK 3 L13: 0.0195 L23: 0.0985 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: 0.0021 S13: 0.0080 REMARK 3 S21: -0.0012 S22: -0.0182 S23: -0.0058 REMARK 3 S31: 0.0063 S32: -0.0259 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 999 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0010 31.7014 -33.1476 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0042 REMARK 3 T33: 0.0098 T12: 0.0021 REMARK 3 T13: -0.0085 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5973 L22: 0.4614 REMARK 3 L33: 0.3467 L12: 0.1096 REMARK 3 L13: -0.0401 L23: 0.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0397 S13: -0.0064 REMARK 3 S21: 0.0498 S22: 0.0178 S23: -0.0659 REMARK 3 S31: 0.0137 S32: 0.0063 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 999 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8283 -4.2956 -28.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.0254 REMARK 3 T33: 0.0211 T12: 0.0235 REMARK 3 T13: 0.0185 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.2974 L22: 0.3774 REMARK 3 L33: 0.6352 L12: 0.0853 REMARK 3 L13: 0.0066 L23: -0.1036 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: 0.0216 S13: -0.0293 REMARK 3 S21: 0.0326 S22: 0.0727 S23: 0.0028 REMARK 3 S31: -0.1125 S32: -0.1013 S33: -0.1069 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 999 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3387 32.5114 -1.1385 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0345 REMARK 3 T33: 0.0071 T12: 0.0095 REMARK 3 T13: -0.0092 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.7030 L22: 0.9819 REMARK 3 L33: 1.1982 L12: -0.1096 REMARK 3 L13: -0.4875 L23: 0.6040 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: 0.0713 S13: 0.0541 REMARK 3 S21: -0.0016 S22: 0.0425 S23: 0.0298 REMARK 3 S31: 0.0480 S32: 0.0931 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1 J 999 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0318 13.9435 -50.3917 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.0441 REMARK 3 T33: 0.0049 T12: -0.0327 REMARK 3 T13: -0.0013 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.0578 L22: 19.7197 REMARK 3 L33: 0.3657 L12: -0.9294 REMARK 3 L13: -0.1288 L23: 2.6838 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.0221 S13: -0.0018 REMARK 3 S21: -0.0767 S22: -0.0418 S23: 0.0668 REMARK 3 S31: -0.0142 S32: -0.0024 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 999 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7807 -16.5251 -28.4915 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0352 REMARK 3 T33: 0.0260 T12: 0.0131 REMARK 3 T13: -0.0034 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.1910 L22: 8.3255 REMARK 3 L33: 1.0189 L12: 5.9068 REMARK 3 L13: 2.0664 L23: 2.9125 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: 0.0409 S13: -0.2846 REMARK 3 S21: 0.1206 S22: 0.0538 S23: -0.3995 REMARK 3 S31: 0.0421 S32: 0.0191 S33: -0.1399 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 999 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9470 27.9985 -43.1727 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: 0.0089 REMARK 3 T33: 0.0166 T12: -0.0017 REMARK 3 T13: -0.0020 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.2607 L22: 13.6446 REMARK 3 L33: 11.5229 L12: -5.4054 REMARK 3 L13: 3.1563 L23: -9.8106 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0027 S13: -0.0208 REMARK 3 S21: -0.0052 S22: 0.0365 S23: 0.0526 REMARK 3 S31: -0.0208 S32: -0.1042 S33: -0.0408 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 999 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4093 20.0285 5.6198 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.0107 REMARK 3 T33: 0.0258 T12: 0.0192 REMARK 3 T13: 0.0268 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.4457 L22: 7.5705 REMARK 3 L33: 1.4828 L12: 1.8366 REMARK 3 L13: 0.8128 L23: 3.3488 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.0011 S13: -0.0330 REMARK 3 S21: 0.3257 S22: -0.0055 S23: -0.1303 REMARK 3 S31: 0.1340 S32: -0.0029 S33: -0.0666 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 1 I 999 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5151 15.7839 -42.2193 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: 0.0082 REMARK 3 T33: 0.0185 T12: -0.0009 REMARK 3 T13: 0.0084 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0157 L22: 0.0462 REMARK 3 L33: 0.0532 L12: 0.0114 REMARK 3 L13: 0.0277 L23: 0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0016 S13: 0.0056 REMARK 3 S21: 0.0122 S22: -0.0052 S23: -0.0078 REMARK 3 S31: -0.0031 S32: -0.0014 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 999 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3709 12.7764 -67.0759 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: 0.0765 REMARK 3 T33: 0.0172 T12: -0.0034 REMARK 3 T13: 0.0023 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.0627 L22: 3.1635 REMARK 3 L33: 0.3383 L12: -0.4445 REMARK 3 L13: -0.1455 L23: 1.0307 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.0108 S13: -0.0092 REMARK 3 S21: -0.0985 S22: -0.0448 S23: 0.0553 REMARK 3 S31: -0.0313 S32: -0.0296 S33: 0.0271 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 999 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1501 33.2809 -27.4534 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0441 REMARK 3 T33: 0.0314 T12: 0.0105 REMARK 3 T13: -0.0234 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.9218 L22: 1.3807 REMARK 3 L33: 6.7716 L12: 1.5894 REMARK 3 L13: 2.8479 L23: 2.7663 REMARK 3 S TENSOR REMARK 3 S11: 0.2319 S12: -0.0147 S13: -0.1775 REMARK 3 S21: 0.1280 S22: -0.0059 S23: -0.1423 REMARK 3 S31: -0.0238 S32: -0.0307 S33: -0.2260 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 999 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8939 26.7611 -7.6846 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.1362 REMARK 3 T33: 0.0121 T12: 0.0573 REMARK 3 T13: -0.0032 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.7831 L22: 3.8374 REMARK 3 L33: 8.2863 L12: 3.2678 REMARK 3 L13: -4.8009 L23: -5.6380 REMARK 3 S TENSOR REMARK 3 S11: -0.2699 S12: 0.0915 S13: -0.0885 REMARK 3 S21: -0.3321 S22: 0.1138 S23: -0.1041 REMARK 3 S31: 0.4973 S32: -0.1363 S33: 0.1561 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 999 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9802 -9.4903 -38.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.0037 REMARK 3 T33: 0.0018 T12: -0.0018 REMARK 3 T13: -0.0018 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.3677 L22: 0.7088 REMARK 3 L33: 3.0318 L12: -0.2339 REMARK 3 L13: -1.9978 L23: 0.0664 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0383 S13: 0.0049 REMARK 3 S21: -0.0201 S22: 0.0342 S23: 0.0314 REMARK 3 S31: 0.0293 S32: -0.0728 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 999 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4369 30.8868 -22.8836 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.0671 REMARK 3 T33: 0.1551 T12: -0.0744 REMARK 3 T13: -0.1438 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 999 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8389 8.0939 -70.6765 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.1067 REMARK 3 T33: 0.0412 T12: 0.0209 REMARK 3 T13: -0.0130 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 1 Q 999 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0830 -7.8519 -44.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.0108 REMARK 3 T33: 0.1152 T12: -0.0355 REMARK 3 T13: 0.1156 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 1 R 999 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6690 28.3598 -8.2811 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.1961 REMARK 3 T33: 0.1412 T12: -0.0203 REMARK 3 T13: 0.0943 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 3EEB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%PEG3350, 15% MPD, 0.1M TRIS-HCL, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.92700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 127.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.92700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A SINGLE MONOMER IN COMPLEX WITH A REMARK 300 SINGLE INOSITOL HEXAKISPHOSPHATE MOLECULE AND A SINGLE CBZ-LEU-LEU- REMARK 300 (AZA)LEU-EPOXIDE INHIBITOR REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 206 REMARK 465 ALA A 207 REMARK 465 GLN A 208 REMARK 465 GLY A 209 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 206 REMARK 465 ALA B 207 REMARK 465 GLN B 208 REMARK 465 GLY B 209 REMARK 465 ALA C 1 REMARK 465 ASP C 2 REMARK 465 GLY C 3 REMARK 465 ASP C 206 REMARK 465 ALA C 207 REMARK 465 GLN C 208 REMARK 465 GLY C 209 REMARK 465 ALA D 1 REMARK 465 ASP D 2 REMARK 465 GLY D 3 REMARK 465 ASP D 206 REMARK 465 ALA D 207 REMARK 465 GLN D 208 REMARK 465 GLY D 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 81.81 46.12 REMARK 500 ARG A 29 0.56 -65.86 REMARK 500 TYR A 74 143.33 -177.17 REMARK 500 ASP A 94 76.10 69.07 REMARK 500 ASN A 99 -167.89 74.76 REMARK 500 VAL A 138 76.39 -100.65 REMARK 500 SER A 141 68.76 37.56 REMARK 500 LEU A 142 40.82 -109.44 REMARK 500 ILE B 5 118.79 -34.05 REMARK 500 ASN B 10 77.51 43.78 REMARK 500 HIS B 55 49.53 -142.21 REMARK 500 ASP B 94 63.77 63.59 REMARK 500 ASN B 99 -156.32 76.94 REMARK 500 SER B 141 65.96 31.86 REMARK 500 LEU B 142 32.29 -99.83 REMARK 500 ASN C 10 77.75 42.26 REMARK 500 ASP C 94 78.25 68.54 REMARK 500 ASN C 99 -169.56 59.48 REMARK 500 ASN C 123 7.09 -59.81 REMARK 500 VAL C 138 72.34 -106.90 REMARK 500 SER C 141 73.20 20.61 REMARK 500 LEU C 164 59.29 -150.22 REMARK 500 ASN D 10 75.74 45.55 REMARK 500 ASP D 24 25.57 -164.10 REMARK 500 ASP D 31 39.36 -82.69 REMARK 500 ALA D 56 -19.82 -48.14 REMARK 500 SER D 78 29.27 -78.53 REMARK 500 LYS D 79 -15.36 -145.26 REMARK 500 ASP D 94 70.94 65.27 REMARK 500 ASN D 99 -177.31 79.85 REMARK 500 SER D 141 89.48 34.01 REMARK 500 LYS D 147 12.04 58.97 REMARK 500 ASN D 198 2.43 -65.30 REMARK 500 SER D 204 -166.57 -169.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 215 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 O REMARK 620 2 IHP A 214 O32 102.3 REMARK 620 3 IHP A 214 O31 171.2 73.5 REMARK 620 4 HOH A 252 O 88.5 81.0 98.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 215 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 27 O REMARK 620 2 IHP B 214 O31 168.9 REMARK 620 3 IHP B 214 O32 104.1 83.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 215 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 27 O REMARK 620 2 IHP C 214 O32 85.3 REMARK 620 3 IHP C 214 O31 139.7 71.7 REMARK 620 4 HOH C 240 O 121.9 152.8 84.5 REMARK 620 5 HOH C 254 O 72.6 98.7 78.7 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 215 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 27 O REMARK 620 2 IHP D 214 O31 164.6 REMARK 620 3 IHP D 214 O32 109.9 72.8 REMARK 620 N 1 2 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: ETHYL (5S,8S,14S)-14-HYDROXY-5,8,11-TRIS(2- REMARK 630 METHYLPROPYL)-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11- REMARK 630 TETRAAZAPENTADECAN-15-OATE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 AZ0 A 213 REMARK 630 AZ0 B 213 REMARK 630 AZ0 C 213 REMARK 630 AZ0 D 213 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU LEU A1X REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZ0 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZ0 B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZ0 C 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP C 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZ0 D 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP D 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 215 DBREF 3GCD A 1 209 UNP Q9KS12 Q9KS12_VIBCH 3442 3650 DBREF 3GCD B 1 209 UNP Q9KS12 Q9KS12_VIBCH 3442 3650 DBREF 3GCD C 1 209 UNP Q9KS12 Q9KS12_VIBCH 3442 3650 DBREF 3GCD D 1 209 UNP Q9KS12 Q9KS12_VIBCH 3442 3650 SEQRES 1 A 209 ALA ASP GLY LYS ILE LEU HIS ASN GLN ASN VAL ASN SER SEQRES 2 A 209 TRP GLY PRO ILE THR VAL THR PRO THR THR ASP GLY GLY SEQRES 3 A 209 GLU THR ARG PHE ASP GLY GLN ILE ILE VAL GLN MET GLU SEQRES 4 A 209 ASN ASP PRO VAL VAL ALA LYS ALA ALA ALA ASN LEU ALA SEQRES 5 A 209 GLY LYS HIS ALA GLU SER SER VAL VAL VAL GLN LEU ASP SEQRES 6 A 209 SER ASP GLY ASN TYR ARG VAL VAL TYR GLY ASP PRO SER SEQRES 7 A 209 LYS LEU ASP GLY LYS LEU ARG TRP GLN LEU VAL GLY HIS SEQRES 8 A 209 GLY ARG ASP HIS SER GLU THR ASN ASN THR ARG LEU SER SEQRES 9 A 209 GLY TYR SER ALA ASP GLU LEU ALA VAL LYS LEU ALA LYS SEQRES 10 A 209 PHE GLN GLN SER PHE ASN GLN ALA GLU ASN ILE ASN ASN SEQRES 11 A 209 LYS PRO ASP HIS ILE SER ILE VAL GLY CYS SER LEU VAL SEQRES 12 A 209 SER ASP ASP LYS GLN LYS GLY PHE GLY HIS GLN PHE ILE SEQRES 13 A 209 ASN ALA MET ASP ALA ASN GLY LEU ARG VAL ASP VAL SER SEQRES 14 A 209 VAL ARG SER SER GLU LEU ALA VAL ASP GLU ALA GLY ARG SEQRES 15 A 209 LYS HIS THR LYS ASP ALA ASN GLY ASP TRP VAL GLN LYS SEQRES 16 A 209 ALA GLU ASN ASN LYS VAL SER LEU SER TRP ASP ALA GLN SEQRES 17 A 209 GLY SEQRES 1 B 209 ALA ASP GLY LYS ILE LEU HIS ASN GLN ASN VAL ASN SER SEQRES 2 B 209 TRP GLY PRO ILE THR VAL THR PRO THR THR ASP GLY GLY SEQRES 3 B 209 GLU THR ARG PHE ASP GLY GLN ILE ILE VAL GLN MET GLU SEQRES 4 B 209 ASN ASP PRO VAL VAL ALA LYS ALA ALA ALA ASN LEU ALA SEQRES 5 B 209 GLY LYS HIS ALA GLU SER SER VAL VAL VAL GLN LEU ASP SEQRES 6 B 209 SER ASP GLY ASN TYR ARG VAL VAL TYR GLY ASP PRO SER SEQRES 7 B 209 LYS LEU ASP GLY LYS LEU ARG TRP GLN LEU VAL GLY HIS SEQRES 8 B 209 GLY ARG ASP HIS SER GLU THR ASN ASN THR ARG LEU SER SEQRES 9 B 209 GLY TYR SER ALA ASP GLU LEU ALA VAL LYS LEU ALA LYS SEQRES 10 B 209 PHE GLN GLN SER PHE ASN GLN ALA GLU ASN ILE ASN ASN SEQRES 11 B 209 LYS PRO ASP HIS ILE SER ILE VAL GLY CYS SER LEU VAL SEQRES 12 B 209 SER ASP ASP LYS GLN LYS GLY PHE GLY HIS GLN PHE ILE SEQRES 13 B 209 ASN ALA MET ASP ALA ASN GLY LEU ARG VAL ASP VAL SER SEQRES 14 B 209 VAL ARG SER SER GLU LEU ALA VAL ASP GLU ALA GLY ARG SEQRES 15 B 209 LYS HIS THR LYS ASP ALA ASN GLY ASP TRP VAL GLN LYS SEQRES 16 B 209 ALA GLU ASN ASN LYS VAL SER LEU SER TRP ASP ALA GLN SEQRES 17 B 209 GLY SEQRES 1 C 209 ALA ASP GLY LYS ILE LEU HIS ASN GLN ASN VAL ASN SER SEQRES 2 C 209 TRP GLY PRO ILE THR VAL THR PRO THR THR ASP GLY GLY SEQRES 3 C 209 GLU THR ARG PHE ASP GLY GLN ILE ILE VAL GLN MET GLU SEQRES 4 C 209 ASN ASP PRO VAL VAL ALA LYS ALA ALA ALA ASN LEU ALA SEQRES 5 C 209 GLY LYS HIS ALA GLU SER SER VAL VAL VAL GLN LEU ASP SEQRES 6 C 209 SER ASP GLY ASN TYR ARG VAL VAL TYR GLY ASP PRO SER SEQRES 7 C 209 LYS LEU ASP GLY LYS LEU ARG TRP GLN LEU VAL GLY HIS SEQRES 8 C 209 GLY ARG ASP HIS SER GLU THR ASN ASN THR ARG LEU SER SEQRES 9 C 209 GLY TYR SER ALA ASP GLU LEU ALA VAL LYS LEU ALA LYS SEQRES 10 C 209 PHE GLN GLN SER PHE ASN GLN ALA GLU ASN ILE ASN ASN SEQRES 11 C 209 LYS PRO ASP HIS ILE SER ILE VAL GLY CYS SER LEU VAL SEQRES 12 C 209 SER ASP ASP LYS GLN LYS GLY PHE GLY HIS GLN PHE ILE SEQRES 13 C 209 ASN ALA MET ASP ALA ASN GLY LEU ARG VAL ASP VAL SER SEQRES 14 C 209 VAL ARG SER SER GLU LEU ALA VAL ASP GLU ALA GLY ARG SEQRES 15 C 209 LYS HIS THR LYS ASP ALA ASN GLY ASP TRP VAL GLN LYS SEQRES 16 C 209 ALA GLU ASN ASN LYS VAL SER LEU SER TRP ASP ALA GLN SEQRES 17 C 209 GLY SEQRES 1 D 209 ALA ASP GLY LYS ILE LEU HIS ASN GLN ASN VAL ASN SER SEQRES 2 D 209 TRP GLY PRO ILE THR VAL THR PRO THR THR ASP GLY GLY SEQRES 3 D 209 GLU THR ARG PHE ASP GLY GLN ILE ILE VAL GLN MET GLU SEQRES 4 D 209 ASN ASP PRO VAL VAL ALA LYS ALA ALA ALA ASN LEU ALA SEQRES 5 D 209 GLY LYS HIS ALA GLU SER SER VAL VAL VAL GLN LEU ASP SEQRES 6 D 209 SER ASP GLY ASN TYR ARG VAL VAL TYR GLY ASP PRO SER SEQRES 7 D 209 LYS LEU ASP GLY LYS LEU ARG TRP GLN LEU VAL GLY HIS SEQRES 8 D 209 GLY ARG ASP HIS SER GLU THR ASN ASN THR ARG LEU SER SEQRES 9 D 209 GLY TYR SER ALA ASP GLU LEU ALA VAL LYS LEU ALA LYS SEQRES 10 D 209 PHE GLN GLN SER PHE ASN GLN ALA GLU ASN ILE ASN ASN SEQRES 11 D 209 LYS PRO ASP HIS ILE SER ILE VAL GLY CYS SER LEU VAL SEQRES 12 D 209 SER ASP ASP LYS GLN LYS GLY PHE GLY HIS GLN PHE ILE SEQRES 13 D 209 ASN ALA MET ASP ALA ASN GLY LEU ARG VAL ASP VAL SER SEQRES 14 D 209 VAL ARG SER SER GLU LEU ALA VAL ASP GLU ALA GLY ARG SEQRES 15 D 209 LYS HIS THR LYS ASP ALA ASN GLY ASP TRP VAL GLN LYS SEQRES 16 D 209 ALA GLU ASN ASN LYS VAL SER LEU SER TRP ASP ALA GLN SEQRES 17 D 209 GLY HET AZ0 A 213 42 HET IHP A 214 36 HET NA A 215 1 HET AZ0 B 213 42 HET IHP B 214 36 HET NA B 215 1 HET AZ0 C 213 42 HET IHP C 214 36 HET NA C 215 1 HET AZ0 D 213 42 HET IHP D 214 36 HET NA D 215 1 HETNAM AZ0 ETHYL (5S,8S,14S)-14-HYDROXY-5,8,11-TRIS(2- HETNAM 2 AZ0 METHYLPROPYL)-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10, HETNAM 3 AZ0 11-TETRAAZAPENTADECAN-15-OATE HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM NA SODIUM ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 5 AZ0 4(C30 H48 N4 O8) FORMUL 6 IHP 4(C6 H18 O24 P6) FORMUL 7 NA 4(NA 1+) FORMUL 17 HOH *145(H2 O) HELIX 1 1 ASN A 10 TRP A 14 5 5 HELIX 2 2 ASP A 41 HIS A 55 1 15 HELIX 3 3 ASP A 76 LEU A 80 5 5 HELIX 4 4 ALA A 108 ASN A 127 1 20 HELIX 5 5 GLY A 150 ASN A 162 1 13 HELIX 6 6 ALA A 196 ASN A 198 5 3 HELIX 7 7 ASN B 10 TRP B 14 5 5 HELIX 8 8 ASP B 41 HIS B 55 1 15 HELIX 9 9 ASP B 76 LEU B 80 5 5 HELIX 10 10 SER B 107 ASN B 127 1 21 HELIX 11 11 GLY B 150 ASN B 162 1 13 HELIX 12 12 ALA B 196 ASN B 198 5 3 HELIX 13 13 ASN C 10 TRP C 14 5 5 HELIX 14 14 ASP C 41 HIS C 55 1 15 HELIX 15 15 ASP C 76 LEU C 80 5 5 HELIX 16 16 SER C 107 GLU C 126 1 20 HELIX 17 17 GLY C 150 ALA C 161 1 12 HELIX 18 18 ALA C 196 ASN C 198 5 3 HELIX 19 19 ASN D 10 TRP D 14 5 5 HELIX 20 20 ASP D 41 HIS D 55 1 15 HELIX 21 21 ASP D 76 LEU D 80 5 5 HELIX 22 22 SER D 107 ASN D 127 1 21 HELIX 23 23 GLY D 150 ASN D 162 1 13 HELIX 24 24 ALA D 196 ASN D 198 5 3 SHEET 1 A 7 TYR A 70 TYR A 74 0 SHEET 2 A 7 SER A 59 LEU A 64 -1 N VAL A 61 O VAL A 73 SHEET 3 A 7 GLY A 32 GLN A 37 1 N GLN A 37 O VAL A 62 SHEET 4 A 7 LEU A 84 VAL A 89 1 O ARG A 85 N ILE A 34 SHEET 5 A 7 HIS A 134 VAL A 138 1 O VAL A 138 N LEU A 88 SHEET 6 A 7 ASP A 167 ARG A 171 1 O SER A 169 N ILE A 135 SHEET 7 A 7 LYS A 200 LEU A 203 -1 O LEU A 203 N VAL A 168 SHEET 1 B 3 GLY A 92 ARG A 93 0 SHEET 2 B 3 ARG A 102 LEU A 103 -1 O ARG A 102 N ARG A 93 SHEET 3 B 3 TYR A 106 SER A 107 -1 O TYR A 106 N LEU A 103 SHEET 1 C 3 LEU A 175 VAL A 177 0 SHEET 2 C 3 LYS A 183 LYS A 186 -1 O HIS A 184 N ALA A 176 SHEET 3 C 3 TRP A 192 VAL A 193 -1 O VAL A 193 N THR A 185 SHEET 1 D 7 TYR B 70 TYR B 74 0 SHEET 2 D 7 SER B 59 LEU B 64 -1 N GLN B 63 O ARG B 71 SHEET 3 D 7 GLY B 32 GLN B 37 1 N ILE B 35 O VAL B 60 SHEET 4 D 7 LEU B 84 VAL B 89 1 O GLN B 87 N VAL B 36 SHEET 5 D 7 HIS B 134 VAL B 138 1 O SER B 136 N TRP B 86 SHEET 6 D 7 ASP B 167 ARG B 171 1 O SER B 169 N ILE B 137 SHEET 7 D 7 LYS B 200 LEU B 203 -1 O LEU B 203 N VAL B 168 SHEET 1 E 2 GLY B 92 ARG B 93 0 SHEET 2 E 2 ARG B 102 LEU B 103 -1 O ARG B 102 N ARG B 93 SHEET 1 F 3 LEU B 175 VAL B 177 0 SHEET 2 F 3 LYS B 183 LYS B 186 -1 O HIS B 184 N ALA B 176 SHEET 3 F 3 TRP B 192 VAL B 193 -1 O VAL B 193 N THR B 185 SHEET 1 G 7 TYR C 70 TYR C 74 0 SHEET 2 G 7 SER C 59 LEU C 64 -1 N VAL C 61 O VAL C 73 SHEET 3 G 7 GLY C 32 GLN C 37 1 N ILE C 35 O VAL C 60 SHEET 4 G 7 LEU C 84 VAL C 89 1 O GLN C 87 N VAL C 36 SHEET 5 G 7 PRO C 132 VAL C 138 1 O SER C 136 N TRP C 86 SHEET 6 G 7 ASP C 167 ARG C 171 1 O SER C 169 N ILE C 137 SHEET 7 G 7 LYS C 200 LEU C 203 -1 O LEU C 203 N VAL C 168 SHEET 1 H 2 GLY C 92 ARG C 93 0 SHEET 2 H 2 ARG C 102 LEU C 103 -1 O ARG C 102 N ARG C 93 SHEET 1 I 3 LEU C 175 VAL C 177 0 SHEET 2 I 3 LYS C 183 LYS C 186 -1 O HIS C 184 N ALA C 176 SHEET 3 I 3 TRP C 192 VAL C 193 -1 O VAL C 193 N THR C 185 SHEET 1 J 7 TYR D 70 VAL D 72 0 SHEET 2 J 7 SER D 59 LEU D 64 -1 N GLN D 63 O ARG D 71 SHEET 3 J 7 GLN D 33 GLN D 37 1 N ILE D 35 O VAL D 62 SHEET 4 J 7 ARG D 85 VAL D 89 1 O VAL D 89 N VAL D 36 SHEET 5 J 7 HIS D 134 VAL D 138 1 O VAL D 138 N LEU D 88 SHEET 6 J 7 ASP D 167 ARG D 171 1 O SER D 169 N ILE D 137 SHEET 7 J 7 LYS D 200 LEU D 203 -1 O LEU D 203 N VAL D 168 SHEET 1 K 2 GLY D 92 ARG D 93 0 SHEET 2 K 2 ARG D 102 LEU D 103 -1 O ARG D 102 N ARG D 93 SHEET 1 L 3 LEU D 175 VAL D 177 0 SHEET 2 L 3 LYS D 183 LYS D 186 -1 O HIS D 184 N ALA D 176 SHEET 3 L 3 TRP D 192 GLN D 194 -1 O VAL D 193 N THR D 185 LINK SG CYS A 140 CAG AZ0 A 213 1555 1555 1.80 LINK SG CYS B 140 CAG AZ0 B 213 1555 1555 1.85 LINK SG CYS C 140 CAG AZ0 C 213 1555 1555 1.79 LINK SG CYS D 140 CAG AZ0 D 213 1555 1555 2.01 LINK O GLU A 27 NA NA A 215 1555 1555 1.99 LINK O32 IHP A 214 NA NA A 215 1555 1555 2.28 LINK O31 IHP A 214 NA NA A 215 1555 1555 1.98 LINK NA NA A 215 O HOH A 252 1555 1555 2.71 LINK O GLU B 27 NA NA B 215 1555 1555 2.37 LINK O31 IHP B 214 NA NA B 215 1555 1555 2.27 LINK O32 IHP B 214 NA NA B 215 1555 1555 2.17 LINK O GLU C 27 NA NA C 215 1555 1555 2.32 LINK O32 IHP C 214 NA NA C 215 1555 1555 2.30 LINK O31 IHP C 214 NA NA C 215 1555 1555 1.92 LINK NA NA C 215 O HOH C 240 1555 1555 3.03 LINK NA NA C 215 O HOH C 254 1555 1555 2.29 LINK O GLU D 27 NA NA D 215 1555 1555 2.31 LINK O31 IHP D 214 NA NA D 215 1555 1555 2.05 LINK O32 IHP D 214 NA NA D 215 1555 1555 2.33 SITE 1 AC1 14 VAL A 43 ALA A 47 ASN A 50 GLY A 90 SITE 2 AC1 14 HIS A 91 GLY A 92 VAL A 138 CYS A 140 SITE 3 AC1 14 GLU A 174 LEU A 175 ALA A 176 VAL A 177 SITE 4 AC1 14 HIS A 184 HOH A 220 SITE 1 AC2 22 GLU A 27 THR A 28 ARG A 29 PHE A 30 SITE 2 AC2 22 LYS A 54 HIS A 55 ARG A 85 SER A 136 SITE 3 AC2 22 SER A 169 ARG A 171 ARG A 182 LYS A 183 SITE 4 AC2 22 LYS A 195 LYS A 200 NA A 215 HOH A 221 SITE 5 AC2 22 HOH A 223 HOH A 229 HOH A 230 HOH A 249 SITE 6 AC2 22 HOH A 251 HOH A 253 SITE 1 AC3 3 GLU A 27 IHP A 214 HOH A 252 SITE 1 AC4 13 HIS A 95 VAL B 43 ALA B 47 ASN B 50 SITE 2 AC4 13 GLY B 90 HIS B 91 GLY B 92 CYS B 140 SITE 3 AC4 13 LEU B 175 ALA B 176 VAL B 177 TRP B 192 SITE 4 AC4 13 HOH B 240 SITE 1 AC5 15 GLU B 27 THR B 28 ARG B 29 LYS B 54 SITE 2 AC5 15 HIS B 55 ARG B 85 HIS B 134 SER B 136 SITE 3 AC5 15 SER B 169 ARG B 171 ARG B 182 LYS B 183 SITE 4 AC5 15 LYS B 195 LYS B 200 NA B 215 SITE 1 AC6 2 GLU B 27 IHP B 214 SITE 1 AC7 21 ASP B 109 ASN B 157 ALA B 158 LYS C 4 SITE 2 AC7 21 VAL C 43 LYS C 46 ALA C 47 ASN C 50 SITE 3 AC7 21 GLY C 90 HIS C 91 GLY C 92 VAL C 138 SITE 4 AC7 21 CYS C 140 GLU C 174 LEU C 175 ALA C 176 SITE 5 AC7 21 VAL C 177 TRP C 192 HOH C 230 HOH C 244 SITE 6 AC7 21 ARG D 165 SITE 1 AC8 19 GLU C 27 THR C 28 ARG C 29 LYS C 54 SITE 2 AC8 19 HIS C 55 ARG C 85 SER C 136 SER C 169 SITE 3 AC8 19 ARG C 171 ARG C 182 LYS C 183 LYS C 195 SITE 4 AC8 19 LYS C 200 NA C 215 HOH C 217 HOH C 219 SITE 5 AC8 19 HOH C 220 HOH C 235 HOH C 254 SITE 1 AC9 4 GLU C 27 IHP C 214 HOH C 240 HOH C 254 SITE 1 BC1 16 LYS D 4 VAL D 43 ALA D 47 ASN D 50 SITE 2 BC1 16 GLY D 90 HIS D 91 GLY D 92 HIS D 95 SITE 3 BC1 16 GLU D 97 ASN D 100 CYS D 140 LEU D 175 SITE 4 BC1 16 ALA D 176 VAL D 177 TRP D 192 HOH D 227 SITE 1 BC2 14 THR D 28 ARG D 29 LYS D 54 HIS D 55 SITE 2 BC2 14 ARG D 85 SER D 136 SER D 169 ARG D 171 SITE 3 BC2 14 ARG D 182 LYS D 183 LYS D 195 LYS D 200 SITE 4 BC2 14 NA D 215 HOH D 218 SITE 1 BC3 2 GLU D 27 IHP D 214 CRYST1 48.560 65.854 254.880 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003923 0.00000