HEADER OXIDOREDUCTASE 22-FEB-09 3GCK TITLE MODE OF LIGAND BINDING AND ASSIGNMENT OF SUBSITES IN MAMMALIAN TITLE 2 PEROXIDASES: CRYSTAL STRUCTURE OF LACTOPEROXIDASE COMPLEXES WITH TITLE 3 ACETYL SALYCYLIC ACID, SALICYLHYDROXAMIC ACID AND BENZYLHYDROXAMIC TITLE 4 ACID CAVEAT 3GCK NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 118-712; COMPND 5 SYNONYM: LPO; COMPND 6 EC: 1.11.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS PEROXIDASE, HEME, OXIDATION, OXIDOREDUCTASE, ANTIBIOTIC, KEYWDS 2 ANTIMICROBIAL, CLEAVAGE ON PAIR OF BASIC RESIDUES, GLYCOPROTEIN, KEYWDS 3 HYDROGEN PEROXIDE, IRON, METAL-BINDING, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,N.SINGH,M.SINHA,A.BHUSHAN,P.KAUR,A.SRINIVASAN,S.SHARMA, AUTHOR 2 T.P.SINGH REVDAT 5 30-OCT-24 3GCK 1 REMARK REVDAT 4 01-NOV-23 3GCK 1 HETSYN REVDAT 3 29-JUL-20 3GCK 1 CAVEAT COMPND REMARK HET REVDAT 3 2 1 HETNAM HETSYN FORMUL LINK REVDAT 3 3 1 SITE ATOM REVDAT 2 13-JUL-11 3GCK 1 VERSN REVDAT 1 31-MAR-09 3GCK 0 JRNL AUTH A.K.SINGH,N.SINGH,M.SINHA,A.BHUSHAN,P.KAUR,A.SRINIVASAN, JRNL AUTH 2 S.SHARMA,T.P.SINGH JRNL TITL MODE OF LIGAND BINDING AND ASSIGNMENT OF SUBSITES IN JRNL TITL 2 MAMMALIAN PEROXIDASES: CRYSTAL STRUCTURE OF LACTOPEROXIDASE JRNL TITL 3 COMPLEXES WITH ACETYL SALYCYLIC ACID, SALICYLHYDROXAMIC ACID JRNL TITL 4 AND BENZYLHYDROXAMIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 40559.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 11998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 614 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1914 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 199 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : 4.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.180 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.180 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.020 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 22.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ALL.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ALL.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54312 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11998 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3BXI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM IODIDE, PEG3350, PH6.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.05650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 258 CMB HEM A 605 1.57 REMARK 500 OD2 ASP A 108 CMD HEM A 605 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 14 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 LEU A 119 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 CYS A 167 CA - CB - SG ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO A 170 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 PRO A 170 C - N - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 GLN A 173 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 LEU A 199 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 PRO A 509 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 66.58 -69.93 REMARK 500 CYS A 6 165.21 -34.06 REMARK 500 PRO A 11 -82.84 -63.33 REMARK 500 LEU A 12 114.47 83.24 REMARK 500 CYS A 28 10.25 56.99 REMARK 500 ALA A 56 -34.13 -141.26 REMARK 500 ILE A 82 -52.74 -134.14 REMARK 500 LEU A 119 86.66 -65.86 REMARK 500 HIS A 124 40.53 -100.47 REMARK 500 ASP A 137 -120.45 57.44 REMARK 500 CYS A 167 -121.32 75.50 REMARK 500 PRO A 168 -118.51 -74.26 REMARK 500 THR A 169 -12.75 -171.65 REMARK 500 ALA A 200 -27.15 -35.83 REMARK 500 PRO A 209 40.61 -89.92 REMARK 500 HIS A 222 29.56 39.08 REMARK 500 ALA A 225 153.79 -48.16 REMARK 500 LYS A 232 111.47 -23.14 REMARK 500 ASN A 241 84.77 -151.48 REMARK 500 ARG A 245 74.53 37.22 REMARK 500 PRO A 247 178.70 -55.99 REMARK 500 ILE A 260 -29.00 -35.26 REMARK 500 ASN A 364 45.53 -94.32 REMARK 500 TYR A 365 48.52 34.57 REMARK 500 PRO A 367 112.57 -35.93 REMARK 500 TRP A 368 29.45 -57.05 REMARK 500 PRO A 370 -60.53 -24.38 REMARK 500 ASP A 389 42.26 -152.50 REMARK 500 MET A 412 -67.34 -106.04 REMARK 500 ASN A 473 107.60 -165.59 REMARK 500 LYS A 485 -5.43 53.97 REMARK 500 THR A 486 133.54 -171.79 REMARK 500 ARG A 504 -7.50 76.08 REMARK 500 PRO A 533 90.67 -41.57 REMARK 500 GLN A 545 5.32 -65.41 REMARK 500 SER A 580 -19.48 -46.80 REMARK 500 PRO A 589 0.56 -57.89 REMARK 500 ALA A 591 112.86 -39.70 REMARK 500 GLU A 594 11.91 90.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 O REMARK 620 2 ASP A 110 OD1 59.3 REMARK 620 3 THR A 184 O 75.6 122.6 REMARK 620 4 THR A 184 OG1 137.8 162.3 68.0 REMARK 620 5 PHE A 186 O 109.2 84.9 78.0 83.8 REMARK 620 6 ASP A 188 OD1 140.1 87.9 144.3 78.1 87.7 REMARK 620 7 SER A 190 OG 83.2 92.9 116.3 94.1 163.7 76.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 605 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 351 NE2 REMARK 620 2 HEM A 605 NA 100.1 REMARK 620 3 HEM A 605 NB 98.3 88.8 REMARK 620 4 HEM A 605 NC 81.7 175.8 87.2 REMARK 620 5 HEM A 605 ND 82.5 98.4 172.5 85.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BXI RELATED DB: PDB REMARK 900 STRUCTURE OF THE COMPLEX OF BOVINE LACTOPEROXIDASE WITH ITS REMARK 900 CATALYZED PRODUCT HYPOTHIOCYANATE ION AT 2.3A RESOLUTION REMARK 900 RELATED ID: 3GC1 RELATED DB: PDB REMARK 900 RELATED ID: 3GCJ RELATED DB: PDB REMARK 900 RELATED ID: 3GCL RELATED DB: PDB DBREF 3GCK A 1 595 UNP P80025 PERL_BOVIN 118 712 SEQRES 1 A 595 SER TRP GLU VAL GLY CYS GLY ALA PRO VAL PRO LEU VAL SEQRES 2 A 595 LYS CYS ASP GLU ASN SER PRO TYR ARG THR ILE THR GLY SEQRES 3 A 595 ASP CYS ASN ASN ARG ARG SER PRO ALA LEU GLY ALA ALA SEQRES 4 A 595 ASN ARG ALA LEU ALA ARG TRP LEU PRO ALA GLU TYR GLU SEQRES 5 A 595 ASP GLY LEU ALA LEU PRO PHE GLY TRP THR GLN ARG LYS SEQRES 6 A 595 THR ARG ASN GLY PHE ARG VAL PRO LEU ALA ARG GLU VAL SEQRES 7 A 595 SER ASN LYS ILE VAL GLY TYR LEU ASP GLU GLU GLY VAL SEQRES 8 A 595 LEU ASP GLN ASN ARG SER LEU LEU PHE MET GLN TRP GLY SEQRES 9 A 595 GLN ILE VAL ASP HIS ASP LEU ASP PHE ALA PRO GLU THR SEQRES 10 A 595 GLU LEU GLY SER ASN GLU HIS SER LYS THR GLN CYS GLU SEQRES 11 A 595 GLU TYR CYS ILE GLN GLY ASP ASN CYS PHE PRO ILE MET SEQRES 12 A 595 PHE PRO LYS ASN ASP PRO LYS LEU LYS THR GLN GLY LYS SEQRES 13 A 595 CYS MET PRO PHE PHE ARG ALA GLY PHE VAL CYS PRO THR SEQRES 14 A 595 PRO PRO TYR GLN SER LEU ALA ARG GLU GLN ILE ASN ALA SEQRES 15 A 595 VAL THR SER PHE LEU ASP ALA SER LEU VAL TYR GLY SER SEQRES 16 A 595 GLU PRO SEP LEU ALA SER ARG LEU ARG ASN LEU SER SER SEQRES 17 A 595 PRO LEU GLY LEU MET ALA VAL ASN GLN GLU ALA TRP ASP SEQRES 18 A 595 HIS GLY LEU ALA TYR LEU PRO PHE ASN ASN LYS LYS PRO SEQRES 19 A 595 SER PRO CYS GLU PHE ILE ASN THR THR ALA ARG VAL PRO SEQRES 20 A 595 CYS PHE LEU ALA GLY ASP PHE ARG ALA SER GLU GLN ILE SEQRES 21 A 595 LEU LEU ALA THR ALA HIS THR LEU LEU LEU ARG GLU HIS SEQRES 22 A 595 ASN ARG LEU ALA ARG GLU LEU LYS LYS LEU ASN PRO HIS SEQRES 23 A 595 TRP ASN GLY GLU LYS LEU TYR GLN GLU ALA ARG LYS ILE SEQRES 24 A 595 LEU GLY ALA PHE ILE GLN ILE ILE THR PHE ARG ASP TYR SEQRES 25 A 595 LEU PRO ILE VAL LEU GLY SER GLU MET GLN LYS TRP ILE SEQRES 26 A 595 PRO PRO TYR GLN GLY TYR ASN ASN SER VAL ASP PRO ARG SEQRES 27 A 595 ILE SER ASN VAL PHE THR PHE ALA PHE ARG PHE GLY HIS SEQRES 28 A 595 MET GLU VAL PRO SER THR VAL SER ARG LEU ASP GLU ASN SEQRES 29 A 595 TYR GLN PRO TRP GLY PRO GLU ALA GLU LEU PRO LEU HIS SEQRES 30 A 595 THR LEU PHE PHE ASN THR TRP ARG ILE ILE LYS ASP GLY SEQRES 31 A 595 GLY ILE ASP PRO LEU VAL ARG GLY LEU LEU ALA LYS LYS SEQRES 32 A 595 SER LYS LEU MET ASN GLN ASP LYS MET VAL THR SER GLU SEQRES 33 A 595 LEU ARG ASN LYS LEU PHE GLN PRO THR HIS LYS ILE HIS SEQRES 34 A 595 GLY PHE ASP LEU ALA ALA ILE ASN LEU GLN ARG CYS ARG SEQRES 35 A 595 ASP HIS GLY MET PRO GLY TYR ASN SER TRP ARG GLY PHE SEQRES 36 A 595 CYS GLY LEU SER GLN PRO LYS THR LEU LYS GLY LEU GLN SEQRES 37 A 595 THR VAL LEU LYS ASN LYS ILE LEU ALA LYS LYS LEU MET SEQRES 38 A 595 ASP LEU TYR LYS THR PRO ASP ASN ILE ASP ILE TRP ILE SEQRES 39 A 595 GLY GLY ASN ALA GLU PRO MET VAL GLU ARG GLY ARG VAL SEQRES 40 A 595 GLY PRO LEU LEU ALA CYS LEU LEU GLY ARG GLN PHE GLN SEQRES 41 A 595 GLN ILE ARG ASP GLY ASP ARG PHE TRP TRP GLU ASN PRO SEQRES 42 A 595 GLY VAL PHE THR GLU LYS GLN ARG ASP SER LEU GLN LYS SEQRES 43 A 595 VAL SER PHE SER ARG LEU ILE CYS ASP ASN THR HIS ILE SEQRES 44 A 595 THR LYS VAL PRO LEU HIS ALA PHE GLN ALA ASN ASN TYR SEQRES 45 A 595 PRO HIS ASP PHE VAL ASP CYS SER THR VAL ASP LYS LEU SEQRES 46 A 595 ASP LEU SER PRO TRP ALA SER ARG GLU ASN MODRES 3GCK ASN A 95 ASN GLYCOSYLATION SITE MODRES 3GCK ASN A 241 ASN GLYCOSYLATION SITE MODRES 3GCK ASN A 332 ASN GLYCOSYLATION SITE MODRES 3GCK ASN A 205 ASN GLYCOSYLATION SITE MODRES 3GCK SEP A 198 SER PHOSPHOSERINE HET SEP A 198 10 HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET HEM A 605 43 HET CA A 606 1 HET IOD A 608 1 HET IOD A 609 1 HET IOD A 610 1 HET IOD A 611 1 HET IOD A 612 1 HET IOD A 613 1 HET IOD A 614 1 HET IOD A 615 1 HET SCN A 616 3 HET BHO A 800 10 HETNAM SEP PHOSPHOSERINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM IOD IODIDE ION HETNAM SCN THIOCYANATE ION HETNAM BHO BENZHYDROXAMIC ACID HETSYN SEP PHOSPHONOSERINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 MAN 2(C6 H12 O6) FORMUL 6 HEM C34 H32 FE N4 O4 FORMUL 7 CA CA 2+ FORMUL 8 IOD 8(I 1-) FORMUL 16 SCN C N S 1- FORMUL 17 BHO C7 H7 N O2 FORMUL 18 HOH *156(H2 O) HELIX 1 1 LEU A 74 ILE A 82 1 9 HELIX 2 2 LEU A 98 ASP A 112 1 15 HELIX 3 3 LYS A 126 GLU A 131 1 6 HELIX 4 4 ASP A 148 GLY A 155 1 8 HELIX 5 5 ALA A 189 GLY A 194 1 6 HELIX 6 6 GLU A 196 ARG A 204 1 9 HELIX 7 7 GLN A 259 ASN A 284 1 26 HELIX 8 8 ASN A 288 TYR A 312 1 25 HELIX 9 9 LEU A 313 VAL A 316 5 4 HELIX 10 10 LEU A 317 SER A 319 5 3 HELIX 11 11 GLU A 320 ILE A 325 1 6 HELIX 12 12 VAL A 342 PHE A 347 1 6 HELIX 13 13 ARG A 348 VAL A 354 5 7 HELIX 14 14 HIS A 377 PHE A 380 5 4 HELIX 15 15 THR A 383 ASP A 389 1 7 HELIX 16 16 ILE A 392 LYS A 402 1 11 HELIX 17 17 THR A 414 ASN A 419 1 6 HELIX 18 18 ASP A 432 HIS A 444 1 13 HELIX 19 19 GLY A 448 CYS A 456 1 9 HELIX 20 20 THR A 463 LYS A 472 1 10 HELIX 21 21 ASN A 473 LYS A 485 1 13 HELIX 22 22 THR A 486 ILE A 490 5 5 HELIX 23 23 ASP A 491 GLU A 499 1 9 HELIX 24 24 GLY A 508 GLY A 525 1 18 HELIX 25 25 THR A 537 GLN A 545 1 9 HELIX 26 26 SER A 548 THR A 557 1 10 HELIX 27 27 SER A 580 VAL A 582 5 3 HELIX 28 28 LEU A 587 ALA A 591 5 5 SHEET 1 A 2 ARG A 41 ALA A 42 0 SHEET 2 A 2 ILE A 180 ASN A 181 -1 O ASN A 181 N ARG A 41 SHEET 1 B 2 LEU A 92 SER A 97 0 SHEET 2 B 2 LYS A 403 LYS A 405 -1 O SER A 404 N ASP A 93 SHEET 1 C 2 ILE A 142 MET A 143 0 SHEET 2 C 2 CYS A 157 MET A 158 -1 O MET A 158 N ILE A 142 SHEET 1 D 2 THR A 357 SER A 359 0 SHEET 2 D 2 GLU A 373 PRO A 375 -1 O LEU A 374 N VAL A 358 SHEET 1 E 2 LEU A 421 PHE A 422 0 SHEET 2 E 2 HIS A 429 PHE A 431 -1 O GLY A 430 N LEU A 421 SHEET 1 F 2 LYS A 561 VAL A 562 0 SHEET 2 F 2 VAL A 577 ASP A 578 -1 O VAL A 577 N VAL A 562 SSBOND 1 CYS A 6 CYS A 167 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 28 1555 1555 2.02 SSBOND 3 CYS A 129 CYS A 139 1555 1555 2.05 SSBOND 4 CYS A 133 CYS A 157 1555 1555 2.03 SSBOND 5 CYS A 237 CYS A 248 1555 1555 2.04 SSBOND 6 CYS A 456 CYS A 513 1555 1555 2.03 SSBOND 7 CYS A 554 CYS A 579 1555 1555 2.03 LINK ND2 ASN A 95 C1 NAG B 1 1555 1555 1.46 LINK C PRO A 197 N SEP A 198 1555 1555 1.30 LINK C SEP A 198 N LEU A 199 1555 1555 1.33 LINK ND2 ASN A 205 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 241 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 332 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.40 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.37 LINK O ASP A 110 CA CA A 606 1555 1555 2.64 LINK OD1 ASP A 110 CA CA A 606 1555 1555 2.58 LINK O THR A 184 CA CA A 606 1555 1555 2.64 LINK OG1 THR A 184 CA CA A 606 1555 1555 2.53 LINK O PHE A 186 CA CA A 606 1555 1555 2.66 LINK OD1 ASP A 188 CA CA A 606 1555 1555 2.70 LINK OG SER A 190 CA CA A 606 1555 1555 2.70 LINK NE2 HIS A 351 FE HEM A 605 1555 1555 2.37 CISPEP 1 LYS A 233 PRO A 234 0 0.52 CISPEP 2 TYR A 572 PRO A 573 0 0.45 CRYST1 54.515 80.113 68.571 90.00 93.99 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018344 0.000000 0.001279 0.00000 SCALE2 0.000000 0.012482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014619 0.00000 CONECT 46 1320 CONECT 106 207 CONECT 207 106 CONECT 740 4776 CONECT 865 4953 CONECT 868 4953 CONECT 1015 1094 CONECT 1051 1239 CONECT 1094 1015 CONECT 1239 1051 CONECT 1320 46 CONECT 1449 4953 CONECT 1451 4953 CONECT 1462 4953 CONECT 1484 4953 CONECT 1496 4953 CONECT 1545 1550 CONECT 1550 1545 1551 CONECT 1551 1550 1552 1554 CONECT 1552 1551 1553 CONECT 1553 1552 1556 CONECT 1554 1551 1555 1560 CONECT 1555 1554 CONECT 1556 1553 1557 1558 1559 CONECT 1557 1556 CONECT 1558 1556 CONECT 1559 1556 CONECT 1560 1554 CONECT 1616 4815 CONECT 1861 1947 CONECT 1897 4843 CONECT 1947 1861 CONECT 2646 4882 CONECT 2803 4952 CONECT 3655 4091 CONECT 4091 3655 CONECT 4443 4647 CONECT 4647 4443 CONECT 4776 740 4777 4787 CONECT 4777 4776 4778 4784 CONECT 4778 4777 4779 4785 CONECT 4779 4778 4780 4786 CONECT 4780 4779 4781 4787 CONECT 4781 4780 4788 CONECT 4782 4783 4784 4789 CONECT 4783 4782 CONECT 4784 4777 4782 CONECT 4785 4778 CONECT 4786 4779 4790 CONECT 4787 4776 4780 CONECT 4788 4781 CONECT 4789 4782 CONECT 4790 4786 4791 4801 CONECT 4791 4790 4792 4798 CONECT 4792 4791 4793 4799 CONECT 4793 4792 4794 4800 CONECT 4794 4793 4795 4801 CONECT 4795 4794 4802 CONECT 4796 4797 4798 4803 CONECT 4797 4796 CONECT 4798 4791 4796 CONECT 4799 4792 CONECT 4800 4793 4804 CONECT 4801 4790 4794 CONECT 4802 4795 CONECT 4803 4796 CONECT 4804 4800 4805 4813 CONECT 4805 4804 4806 4810 CONECT 4806 4805 4807 4811 CONECT 4807 4806 4808 4812 CONECT 4808 4807 4809 4813 CONECT 4809 4808 4814 CONECT 4810 4805 CONECT 4811 4806 CONECT 4812 4807 CONECT 4813 4804 4808 CONECT 4814 4809 CONECT 4815 1616 4816 4826 CONECT 4816 4815 4817 4823 CONECT 4817 4816 4818 4824 CONECT 4818 4817 4819 4825 CONECT 4819 4818 4820 4826 CONECT 4820 4819 4827 CONECT 4821 4822 4823 4828 CONECT 4822 4821 CONECT 4823 4816 4821 CONECT 4824 4817 CONECT 4825 4818 4829 CONECT 4826 4815 4819 CONECT 4827 4820 CONECT 4828 4821 CONECT 4829 4825 4830 4840 CONECT 4830 4829 4831 4837 CONECT 4831 4830 4832 4838 CONECT 4832 4831 4833 4839 CONECT 4833 4832 4834 4840 CONECT 4834 4833 4841 CONECT 4835 4836 4837 4842 CONECT 4836 4835 CONECT 4837 4830 4835 CONECT 4838 4831 CONECT 4839 4832 CONECT 4840 4829 4833 CONECT 4841 4834 CONECT 4842 4835 CONECT 4843 1897 4844 4854 CONECT 4844 4843 4845 4851 CONECT 4845 4844 4846 4852 CONECT 4846 4845 4847 4853 CONECT 4847 4846 4848 4854 CONECT 4848 4847 4855 CONECT 4849 4850 4851 4856 CONECT 4850 4849 CONECT 4851 4844 4849 CONECT 4852 4845 CONECT 4853 4846 4857 CONECT 4854 4843 4847 CONECT 4855 4848 CONECT 4856 4849 CONECT 4857 4853 4858 4868 CONECT 4858 4857 4859 4865 CONECT 4859 4858 4860 4866 CONECT 4860 4859 4861 4867 CONECT 4861 4860 4862 4868 CONECT 4862 4861 4869 CONECT 4863 4864 4865 4870 CONECT 4864 4863 CONECT 4865 4858 4863 CONECT 4866 4859 CONECT 4867 4860 4871 CONECT 4868 4857 4861 CONECT 4869 4862 CONECT 4870 4863 CONECT 4871 4867 4872 4880 CONECT 4872 4871 4873 4877 CONECT 4873 4872 4874 4878 CONECT 4874 4873 4875 4879 CONECT 4875 4874 4876 4880 CONECT 4876 4875 4881 CONECT 4877 4872 CONECT 4878 4873 CONECT 4879 4874 CONECT 4880 4871 4875 CONECT 4881 4876 CONECT 4882 2646 4883 4893 CONECT 4883 4882 4884 4890 CONECT 4884 4883 4885 4891 CONECT 4885 4884 4886 4892 CONECT 4886 4885 4887 4893 CONECT 4887 4886 4894 CONECT 4888 4889 4890 4895 CONECT 4889 4888 CONECT 4890 4883 4888 CONECT 4891 4884 CONECT 4892 4885 4896 CONECT 4893 4882 4886 CONECT 4894 4887 CONECT 4895 4888 CONECT 4896 4892 4897 4907 CONECT 4897 4896 4898 4904 CONECT 4898 4897 4899 4905 CONECT 4899 4898 4900 4906 CONECT 4900 4899 4901 4907 CONECT 4901 4900 4908 CONECT 4902 4903 4904 4909 CONECT 4903 4902 CONECT 4904 4897 4902 CONECT 4905 4898 CONECT 4906 4899 CONECT 4907 4896 4900 CONECT 4908 4901 CONECT 4909 4902 CONECT 4910 4914 4941 CONECT 4911 4917 4924 CONECT 4912 4927 4931 CONECT 4913 4934 4938 CONECT 4914 4910 4915 4948 CONECT 4915 4914 4916 4919 CONECT 4916 4915 4917 4918 CONECT 4917 4911 4916 4948 CONECT 4918 4916 CONECT 4919 4915 4920 CONECT 4920 4919 4921 CONECT 4921 4920 4922 4923 CONECT 4922 4921 CONECT 4923 4921 CONECT 4924 4911 4925 4949 CONECT 4925 4924 4926 4928 CONECT 4926 4925 4927 4929 CONECT 4927 4912 4926 4949 CONECT 4928 4925 CONECT 4929 4926 4930 CONECT 4930 4929 CONECT 4931 4912 4932 4950 CONECT 4932 4931 4933 4935 CONECT 4933 4932 4934 4936 CONECT 4934 4913 4933 4950 CONECT 4935 4932 CONECT 4936 4933 4937 CONECT 4937 4936 CONECT 4938 4913 4939 4951 CONECT 4939 4938 4940 4942 CONECT 4940 4939 4941 4943 CONECT 4941 4910 4940 4951 CONECT 4942 4939 CONECT 4943 4940 4944 CONECT 4944 4943 4945 CONECT 4945 4944 4946 4947 CONECT 4946 4945 CONECT 4947 4945 CONECT 4948 4914 4917 4952 CONECT 4949 4924 4927 4952 CONECT 4950 4931 4934 4952 CONECT 4951 4938 4941 4952 CONECT 4952 2803 4948 4949 4950 CONECT 4952 4951 CONECT 4953 865 868 1449 1451 CONECT 4953 1462 1484 1496 CONECT 4962 4963 CONECT 4963 4962 4964 CONECT 4964 4963 CONECT 4965 4966 4970 4971 CONECT 4966 4965 4967 CONECT 4967 4966 4968 CONECT 4968 4967 4969 CONECT 4969 4968 4970 CONECT 4970 4965 4969 CONECT 4971 4965 4972 4973 CONECT 4972 4971 CONECT 4973 4971 4974 CONECT 4974 4973 MASTER 339 0 23 28 12 0 0 6 5129 1 231 46 END