HEADER TRANSFERASE / PROTEIN BINDING 22-FEB-09 3GCM TITLE CRYSTAL STRUCTURE OF E. COLI POLYNUCLEOTIDE PHOSPHORYLASE BOUND TO RNA TITLE 2 AND RNASE E COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 1-549; COMPND 5 SYNONYM: POLYNUCLEOTIDE PHOSPHORYLASE, PNPASE; COMPND 6 EC: 2.7.7.8; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBONUCLEASE E; COMPND 9 CHAIN: D, E, F; COMPND 10 FRAGMENT: RNASE E RECOGNITION MICRODOMAIN, RESIDUES 1021-1061; COMPND 11 EC: 3.1.4.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI E24377A; SOURCE 3 ORGANISM_TAXID: 331111; SOURCE 4 STRAIN: BL21 DE3; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_COMMON: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN E. COLI KEYWDS PROTEIN-RNA COMPLEX, CYTOPLASM, NUCLEOTIDYLTRANSFERASE, RNA-BINDING, KEYWDS 2 TRANSFERASE, HYDROLASE, TRANSFERASE - PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.NURMOHAMED,B.L.LUISI REVDAT 2 06-SEP-23 3GCM 1 REMARK REVDAT 1 09-JUN-09 3GCM 0 JRNL AUTH S.NURMOHAMED,B.VAIDIALINGAM,A.J.CALLAGHAN,B.F.LUISI JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI POLYNUCLEOTIDE JRNL TITL 2 PHOSPHORYLASE CORE BOUND TO RNASE E, RNA AND MANGANESE: JRNL TITL 3 IMPLICATIONS FOR CATALYTIC MECHANISM AND RNA DEGRADOSOME JRNL TITL 4 ASSEMBLY. JRNL REF J.MOL.BIOL. V. 389 17 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19327365 JRNL DOI 10.1016/J.JMB.2009.03.051 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 97645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5134 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7130 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 369 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 12785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 884 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13247 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 10 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17995 ; 1.939 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22 ; 1.247 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1709 ; 6.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 578 ;39.495 ;24.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2217 ;15.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 101 ;20.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2073 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10052 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5679 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 17 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 9038 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 7 ; 0.051 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 716 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8728 ; 1.229 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 13614 ; 2.010 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5073 ; 3.361 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4369 ; 5.440 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : HORIZONTALLY DIFFRACTING SILICON REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1E3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM HYDROGEN CITRATE, 17 % REMARK 280 W/V PEG 3350, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.81400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 88.16750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 88.16750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.22100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 88.16750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 88.16750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.40700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 88.16750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.16750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 142.22100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 88.16750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.16750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.40700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.81400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, E, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 546 REMARK 465 ASP A 547 REMARK 465 ILE A 548 REMARK 465 SER A 549 REMARK 465 GLU D 1021 REMARK 465 ALA D 1022 REMARK 465 PRO D 1023 REMARK 465 ARG D 1024 REMARK 465 HIS D 1025 REMARK 465 SER D 1026 REMARK 465 ASP D 1027 REMARK 465 TRP D 1028 REMARK 465 GLN D 1029 REMARK 465 ARG D 1030 REMARK 465 PRO D 1031 REMARK 465 THR D 1032 REMARK 465 PHE D 1033 REMARK 465 ALA D 1034 REMARK 465 PHE D 1035 REMARK 465 GLU D 1036 REMARK 465 GLY D 1037 REMARK 465 LYS D 1038 REMARK 465 VAL D 1060 REMARK 465 GLU D 1061 REMARK 465 ARG B 545 REMARK 465 GLY B 546 REMARK 465 ASP B 547 REMARK 465 ILE B 548 REMARK 465 SER B 549 REMARK 465 GLU E 1021 REMARK 465 ALA E 1022 REMARK 465 PRO E 1023 REMARK 465 ARG E 1024 REMARK 465 HIS E 1025 REMARK 465 SER E 1026 REMARK 465 ASP E 1027 REMARK 465 TRP E 1028 REMARK 465 GLN E 1029 REMARK 465 ARG E 1030 REMARK 465 PRO E 1031 REMARK 465 THR E 1032 REMARK 465 PHE E 1033 REMARK 465 ALA E 1034 REMARK 465 PHE E 1035 REMARK 465 GLU E 1036 REMARK 465 GLY E 1037 REMARK 465 LYS E 1038 REMARK 465 GLY E 1039 REMARK 465 VAL E 1060 REMARK 465 GLU E 1061 REMARK 465 ARG C 545 REMARK 465 GLY C 546 REMARK 465 ASP C 547 REMARK 465 ILE C 548 REMARK 465 SER C 549 REMARK 465 GLU F 1021 REMARK 465 ALA F 1022 REMARK 465 PRO F 1023 REMARK 465 ARG F 1024 REMARK 465 HIS F 1025 REMARK 465 SER F 1026 REMARK 465 ASP F 1027 REMARK 465 TRP F 1028 REMARK 465 GLN F 1029 REMARK 465 ARG F 1030 REMARK 465 PRO F 1031 REMARK 465 THR F 1032 REMARK 465 PHE F 1033 REMARK 465 ALA F 1034 REMARK 465 PHE F 1035 REMARK 465 GLU F 1036 REMARK 465 GLY F 1037 REMARK 465 LYS F 1038 REMARK 465 VAL F 1060 REMARK 465 GLU F 1061 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 51 CD CE NZ REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 174 CD CE NZ REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 ARG A 360 CD NE CZ NH1 NH2 REMARK 470 GLN D1058 CG CD OE1 NE2 REMARK 470 LYS B 51 CD CE NZ REMARK 470 ARG B 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 174 CD CE NZ REMARK 470 GLN E1058 CG CD OE1 NE2 REMARK 470 LYS C 51 CD CE NZ REMARK 470 ARG C 83 NE CZ NH1 NH2 REMARK 470 LYS C 174 CD CE NZ REMARK 470 ARG C 360 CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 398 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 398 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 559 O HOH B 625 1.90 REMARK 500 O HOH B 651 O HOH B 674 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 392 CA MET A 392 C -0.282 REMARK 500 MET A 392 CA MET A 392 C -0.276 REMARK 500 ARG A 398 N ARG A 398 CA -0.191 REMARK 500 ARG A 398 N ARG A 398 CA -0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 398 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -17.81 77.72 REMARK 500 PRO A 122 2.75 -66.44 REMARK 500 PRO A 144 109.67 -48.94 REMARK 500 ASN A 146 43.22 -89.87 REMARK 500 ASN A 164 63.58 39.41 REMARK 500 MET A 392 106.90 -32.02 REMARK 500 MET A 392 107.35 -32.97 REMARK 500 PRO A 396 126.89 -30.07 REMARK 500 PHE A 421 75.76 -158.85 REMARK 500 ASN A 435 47.70 -150.02 REMARK 500 ALA A 459 129.87 -172.96 REMARK 500 ASP A 480 74.95 47.98 REMARK 500 ASP B 36 70.16 47.00 REMARK 500 ASP B 37 -8.46 84.32 REMARK 500 PRO B 52 -65.31 -28.50 REMARK 500 ASN B 146 38.33 -90.77 REMARK 500 ASN B 164 63.75 39.24 REMARK 500 ARG B 360 -39.96 -28.65 REMARK 500 ASN B 435 42.18 -151.59 REMARK 500 ASP B 480 76.43 48.37 REMARK 500 ASP C 37 -14.59 80.47 REMARK 500 PRO C 122 -8.73 -58.30 REMARK 500 ASN C 146 41.87 -86.35 REMARK 500 THR C 182 -168.67 -77.78 REMARK 500 ASN C 435 56.43 -154.34 REMARK 500 ASP C 480 72.21 48.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 436 SER A 437 -88.80 REMARK 500 GLY B 436 SER B 437 -96.74 REMARK 500 GLY C 436 SER C 437 -96.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 392 13.96 REMARK 500 MET A 392 14.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 5GP B 550 REMARK 610 5GP B 551 REMARK 610 5GP C 550 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 553 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 554 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 556 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP C 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC C 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC C 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 553 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GLL RELATED DB: PDB REMARK 900 RELATED ID: 3GME RELATED DB: PDB DBREF 3GCM A 1 549 UNP A7ZS61 PNP_ECO24 1 549 DBREF 3GCM D 1021 1061 UNP A7ZKI9 A7ZKI9_ECO24 1021 1061 DBREF 3GCM B 1 549 UNP A7ZS61 PNP_ECO24 1 549 DBREF 3GCM E 1021 1061 UNP A7ZKI9 A7ZKI9_ECO24 1021 1061 DBREF 3GCM C 1 549 UNP A7ZS61 PNP_ECO24 1 549 DBREF 3GCM F 1021 1061 UNP A7ZKI9 A7ZKI9_ECO24 1021 1061 SEQRES 1 A 549 MET LEU ASN PRO ILE VAL ARG LYS PHE GLN TYR GLY GLN SEQRES 2 A 549 HIS THR VAL THR LEU GLU THR GLY MET MET ALA ARG GLN SEQRES 3 A 549 ALA THR ALA ALA VAL MET VAL SER MET ASP ASP THR ALA SEQRES 4 A 549 VAL PHE VAL THR VAL VAL GLY GLN LYS LYS ALA LYS PRO SEQRES 5 A 549 GLY GLN ASP PHE PHE PRO LEU THR VAL ASN TYR GLN GLU SEQRES 6 A 549 ARG THR TYR ALA ALA GLY ARG ILE PRO GLY SER PHE PHE SEQRES 7 A 549 ARG ARG GLU GLY ARG PRO SER GLU GLY GLU THR LEU ILE SEQRES 8 A 549 ALA ARG LEU ILE ASP ARG PRO ILE ARG PRO LEU PHE PRO SEQRES 9 A 549 GLU GLY PHE VAL ASN GLU VAL GLN VAL ILE ALA THR VAL SEQRES 10 A 549 VAL SER VAL ASN PRO GLN VAL ASN PRO ASP ILE VAL ALA SEQRES 11 A 549 MET ILE GLY ALA SER ALA ALA LEU SER LEU SER GLY ILE SEQRES 12 A 549 PRO PHE ASN GLY PRO ILE GLY ALA ALA ARG VAL GLY TYR SEQRES 13 A 549 ILE ASN ASP GLN TYR VAL LEU ASN PRO THR GLN ASP GLU SEQRES 14 A 549 LEU LYS GLU SER LYS LEU ASP LEU VAL VAL ALA GLY THR SEQRES 15 A 549 GLU ALA ALA VAL LEU MET VAL GLU SER GLU ALA GLU LEU SEQRES 16 A 549 LEU SER GLU ASP GLN MET LEU GLY ALA VAL VAL PHE GLY SEQRES 17 A 549 HIS GLU GLN GLN GLN VAL VAL ILE GLN ASN ILE ASN GLU SEQRES 18 A 549 LEU VAL LYS GLU ALA GLY LYS PRO ARG TRP ASP TRP GLN SEQRES 19 A 549 PRO GLU PRO VAL ASN GLU ALA LEU ASN ALA ARG VAL ALA SEQRES 20 A 549 ALA LEU ALA GLU ALA ARG LEU SER ASP ALA TYR ARG ILE SEQRES 21 A 549 THR ASP LYS GLN GLU ARG TYR ALA GLN VAL ASP VAL ILE SEQRES 22 A 549 LYS SER GLU THR ILE ALA THR LEU LEU ALA GLU ASP GLU SEQRES 23 A 549 THR LEU ASP GLU ASN GLU LEU GLY GLU ILE LEU HIS ALA SEQRES 24 A 549 ILE GLU LYS ASN VAL VAL ARG SER ARG VAL LEU ALA GLY SEQRES 25 A 549 GLU PRO ARG ILE ASP GLY ARG GLU LYS ASP MET ILE ARG SEQRES 26 A 549 GLY LEU ASP VAL ARG THR GLY VAL LEU PRO ARG THR HIS SEQRES 27 A 549 GLY SER ALA LEU PHE THR ARG GLY GLU THR GLN ALA LEU SEQRES 28 A 549 VAL THR ALA THR LEU GLY THR ALA ARG ASP ALA GLN VAL SEQRES 29 A 549 LEU ASP GLU LEU MET GLY GLU ARG THR ASP THR PHE LEU SEQRES 30 A 549 PHE HIS TYR ASN PHE PRO PRO TYR SER VAL GLY GLU THR SEQRES 31 A 549 GLY MET VAL GLY SER PRO LYS ARG ARG GLU ILE GLY HIS SEQRES 32 A 549 GLY ARG LEU ALA LYS ARG GLY VAL LEU ALA VAL MET PRO SEQRES 33 A 549 ASP MET ASP LYS PHE PRO TYR THR VAL ARG VAL VAL SER SEQRES 34 A 549 GLU ILE THR GLU SER ASN GLY SER SER SER MET ALA SER SEQRES 35 A 549 VAL CYS GLY ALA SER LEU ALA LEU MET ASP ALA GLY VAL SEQRES 36 A 549 PRO ILE LYS ALA ALA VAL ALA GLY ILE ALA MET GLY LEU SEQRES 37 A 549 VAL LYS GLU GLY ASP ASN TYR VAL VAL LEU SER ASP ILE SEQRES 38 A 549 LEU GLY ASP GLU ASP HIS LEU GLY ASP MET ASP PHE LYS SEQRES 39 A 549 VAL ALA GLY SER ARG ASP GLY ILE SER ALA LEU GLN MET SEQRES 40 A 549 ASP ILE LYS ILE GLU GLY ILE THR LYS GLU ILE MET GLN SEQRES 41 A 549 VAL ALA LEU ASN GLN ALA LYS GLY ALA ARG LEU HIS ILE SEQRES 42 A 549 LEU GLY VAL MET GLU GLN ALA ILE ASN ALA PRO ARG GLY SEQRES 43 A 549 ASP ILE SER SEQRES 1 D 41 GLU ALA PRO ARG HIS SER ASP TRP GLN ARG PRO THR PHE SEQRES 2 D 41 ALA PHE GLU GLY LYS GLY ALA ALA GLY GLY HIS THR ALA SEQRES 3 D 41 THR HIS HIS ALA SER ALA ALA PRO ALA ARG PRO GLN PRO SEQRES 4 D 41 VAL GLU SEQRES 1 B 549 MET LEU ASN PRO ILE VAL ARG LYS PHE GLN TYR GLY GLN SEQRES 2 B 549 HIS THR VAL THR LEU GLU THR GLY MET MET ALA ARG GLN SEQRES 3 B 549 ALA THR ALA ALA VAL MET VAL SER MET ASP ASP THR ALA SEQRES 4 B 549 VAL PHE VAL THR VAL VAL GLY GLN LYS LYS ALA LYS PRO SEQRES 5 B 549 GLY GLN ASP PHE PHE PRO LEU THR VAL ASN TYR GLN GLU SEQRES 6 B 549 ARG THR TYR ALA ALA GLY ARG ILE PRO GLY SER PHE PHE SEQRES 7 B 549 ARG ARG GLU GLY ARG PRO SER GLU GLY GLU THR LEU ILE SEQRES 8 B 549 ALA ARG LEU ILE ASP ARG PRO ILE ARG PRO LEU PHE PRO SEQRES 9 B 549 GLU GLY PHE VAL ASN GLU VAL GLN VAL ILE ALA THR VAL SEQRES 10 B 549 VAL SER VAL ASN PRO GLN VAL ASN PRO ASP ILE VAL ALA SEQRES 11 B 549 MET ILE GLY ALA SER ALA ALA LEU SER LEU SER GLY ILE SEQRES 12 B 549 PRO PHE ASN GLY PRO ILE GLY ALA ALA ARG VAL GLY TYR SEQRES 13 B 549 ILE ASN ASP GLN TYR VAL LEU ASN PRO THR GLN ASP GLU SEQRES 14 B 549 LEU LYS GLU SER LYS LEU ASP LEU VAL VAL ALA GLY THR SEQRES 15 B 549 GLU ALA ALA VAL LEU MET VAL GLU SER GLU ALA GLU LEU SEQRES 16 B 549 LEU SER GLU ASP GLN MET LEU GLY ALA VAL VAL PHE GLY SEQRES 17 B 549 HIS GLU GLN GLN GLN VAL VAL ILE GLN ASN ILE ASN GLU SEQRES 18 B 549 LEU VAL LYS GLU ALA GLY LYS PRO ARG TRP ASP TRP GLN SEQRES 19 B 549 PRO GLU PRO VAL ASN GLU ALA LEU ASN ALA ARG VAL ALA SEQRES 20 B 549 ALA LEU ALA GLU ALA ARG LEU SER ASP ALA TYR ARG ILE SEQRES 21 B 549 THR ASP LYS GLN GLU ARG TYR ALA GLN VAL ASP VAL ILE SEQRES 22 B 549 LYS SER GLU THR ILE ALA THR LEU LEU ALA GLU ASP GLU SEQRES 23 B 549 THR LEU ASP GLU ASN GLU LEU GLY GLU ILE LEU HIS ALA SEQRES 24 B 549 ILE GLU LYS ASN VAL VAL ARG SER ARG VAL LEU ALA GLY SEQRES 25 B 549 GLU PRO ARG ILE ASP GLY ARG GLU LYS ASP MET ILE ARG SEQRES 26 B 549 GLY LEU ASP VAL ARG THR GLY VAL LEU PRO ARG THR HIS SEQRES 27 B 549 GLY SER ALA LEU PHE THR ARG GLY GLU THR GLN ALA LEU SEQRES 28 B 549 VAL THR ALA THR LEU GLY THR ALA ARG ASP ALA GLN VAL SEQRES 29 B 549 LEU ASP GLU LEU MET GLY GLU ARG THR ASP THR PHE LEU SEQRES 30 B 549 PHE HIS TYR ASN PHE PRO PRO TYR SER VAL GLY GLU THR SEQRES 31 B 549 GLY MET VAL GLY SER PRO LYS ARG ARG GLU ILE GLY HIS SEQRES 32 B 549 GLY ARG LEU ALA LYS ARG GLY VAL LEU ALA VAL MET PRO SEQRES 33 B 549 ASP MET ASP LYS PHE PRO TYR THR VAL ARG VAL VAL SER SEQRES 34 B 549 GLU ILE THR GLU SER ASN GLY SER SER SER MET ALA SER SEQRES 35 B 549 VAL CYS GLY ALA SER LEU ALA LEU MET ASP ALA GLY VAL SEQRES 36 B 549 PRO ILE LYS ALA ALA VAL ALA GLY ILE ALA MET GLY LEU SEQRES 37 B 549 VAL LYS GLU GLY ASP ASN TYR VAL VAL LEU SER ASP ILE SEQRES 38 B 549 LEU GLY ASP GLU ASP HIS LEU GLY ASP MET ASP PHE LYS SEQRES 39 B 549 VAL ALA GLY SER ARG ASP GLY ILE SER ALA LEU GLN MET SEQRES 40 B 549 ASP ILE LYS ILE GLU GLY ILE THR LYS GLU ILE MET GLN SEQRES 41 B 549 VAL ALA LEU ASN GLN ALA LYS GLY ALA ARG LEU HIS ILE SEQRES 42 B 549 LEU GLY VAL MET GLU GLN ALA ILE ASN ALA PRO ARG GLY SEQRES 43 B 549 ASP ILE SER SEQRES 1 E 41 GLU ALA PRO ARG HIS SER ASP TRP GLN ARG PRO THR PHE SEQRES 2 E 41 ALA PHE GLU GLY LYS GLY ALA ALA GLY GLY HIS THR ALA SEQRES 3 E 41 THR HIS HIS ALA SER ALA ALA PRO ALA ARG PRO GLN PRO SEQRES 4 E 41 VAL GLU SEQRES 1 C 549 MET LEU ASN PRO ILE VAL ARG LYS PHE GLN TYR GLY GLN SEQRES 2 C 549 HIS THR VAL THR LEU GLU THR GLY MET MET ALA ARG GLN SEQRES 3 C 549 ALA THR ALA ALA VAL MET VAL SER MET ASP ASP THR ALA SEQRES 4 C 549 VAL PHE VAL THR VAL VAL GLY GLN LYS LYS ALA LYS PRO SEQRES 5 C 549 GLY GLN ASP PHE PHE PRO LEU THR VAL ASN TYR GLN GLU SEQRES 6 C 549 ARG THR TYR ALA ALA GLY ARG ILE PRO GLY SER PHE PHE SEQRES 7 C 549 ARG ARG GLU GLY ARG PRO SER GLU GLY GLU THR LEU ILE SEQRES 8 C 549 ALA ARG LEU ILE ASP ARG PRO ILE ARG PRO LEU PHE PRO SEQRES 9 C 549 GLU GLY PHE VAL ASN GLU VAL GLN VAL ILE ALA THR VAL SEQRES 10 C 549 VAL SER VAL ASN PRO GLN VAL ASN PRO ASP ILE VAL ALA SEQRES 11 C 549 MET ILE GLY ALA SER ALA ALA LEU SER LEU SER GLY ILE SEQRES 12 C 549 PRO PHE ASN GLY PRO ILE GLY ALA ALA ARG VAL GLY TYR SEQRES 13 C 549 ILE ASN ASP GLN TYR VAL LEU ASN PRO THR GLN ASP GLU SEQRES 14 C 549 LEU LYS GLU SER LYS LEU ASP LEU VAL VAL ALA GLY THR SEQRES 15 C 549 GLU ALA ALA VAL LEU MET VAL GLU SER GLU ALA GLU LEU SEQRES 16 C 549 LEU SER GLU ASP GLN MET LEU GLY ALA VAL VAL PHE GLY SEQRES 17 C 549 HIS GLU GLN GLN GLN VAL VAL ILE GLN ASN ILE ASN GLU SEQRES 18 C 549 LEU VAL LYS GLU ALA GLY LYS PRO ARG TRP ASP TRP GLN SEQRES 19 C 549 PRO GLU PRO VAL ASN GLU ALA LEU ASN ALA ARG VAL ALA SEQRES 20 C 549 ALA LEU ALA GLU ALA ARG LEU SER ASP ALA TYR ARG ILE SEQRES 21 C 549 THR ASP LYS GLN GLU ARG TYR ALA GLN VAL ASP VAL ILE SEQRES 22 C 549 LYS SER GLU THR ILE ALA THR LEU LEU ALA GLU ASP GLU SEQRES 23 C 549 THR LEU ASP GLU ASN GLU LEU GLY GLU ILE LEU HIS ALA SEQRES 24 C 549 ILE GLU LYS ASN VAL VAL ARG SER ARG VAL LEU ALA GLY SEQRES 25 C 549 GLU PRO ARG ILE ASP GLY ARG GLU LYS ASP MET ILE ARG SEQRES 26 C 549 GLY LEU ASP VAL ARG THR GLY VAL LEU PRO ARG THR HIS SEQRES 27 C 549 GLY SER ALA LEU PHE THR ARG GLY GLU THR GLN ALA LEU SEQRES 28 C 549 VAL THR ALA THR LEU GLY THR ALA ARG ASP ALA GLN VAL SEQRES 29 C 549 LEU ASP GLU LEU MET GLY GLU ARG THR ASP THR PHE LEU SEQRES 30 C 549 PHE HIS TYR ASN PHE PRO PRO TYR SER VAL GLY GLU THR SEQRES 31 C 549 GLY MET VAL GLY SER PRO LYS ARG ARG GLU ILE GLY HIS SEQRES 32 C 549 GLY ARG LEU ALA LYS ARG GLY VAL LEU ALA VAL MET PRO SEQRES 33 C 549 ASP MET ASP LYS PHE PRO TYR THR VAL ARG VAL VAL SER SEQRES 34 C 549 GLU ILE THR GLU SER ASN GLY SER SER SER MET ALA SER SEQRES 35 C 549 VAL CYS GLY ALA SER LEU ALA LEU MET ASP ALA GLY VAL SEQRES 36 C 549 PRO ILE LYS ALA ALA VAL ALA GLY ILE ALA MET GLY LEU SEQRES 37 C 549 VAL LYS GLU GLY ASP ASN TYR VAL VAL LEU SER ASP ILE SEQRES 38 C 549 LEU GLY ASP GLU ASP HIS LEU GLY ASP MET ASP PHE LYS SEQRES 39 C 549 VAL ALA GLY SER ARG ASP GLY ILE SER ALA LEU GLN MET SEQRES 40 C 549 ASP ILE LYS ILE GLU GLY ILE THR LYS GLU ILE MET GLN SEQRES 41 C 549 VAL ALA LEU ASN GLN ALA LYS GLY ALA ARG LEU HIS ILE SEQRES 42 C 549 LEU GLY VAL MET GLU GLN ALA ILE ASN ALA PRO ARG GLY SEQRES 43 C 549 ASP ILE SER SEQRES 1 F 41 GLU ALA PRO ARG HIS SER ASP TRP GLN ARG PRO THR PHE SEQRES 2 F 41 ALA PHE GLU GLY LYS GLY ALA ALA GLY GLY HIS THR ALA SEQRES 3 F 41 THR HIS HIS ALA SER ALA ALA PRO ALA ARG PRO GLN PRO SEQRES 4 F 41 VAL GLU HET FLC A 550 13 HET FLC A 551 13 HET MG A 552 1 HET 5GP B 550 20 HET 5GP B 551 20 HET FLC B 552 13 HET FLC B 553 13 HET FLC B 554 13 HET FLC B 555 13 HET MG B 556 1 HET 5GP C 550 20 HET FLC C 551 13 HET FLC C 552 13 HET MG C 553 1 HETNAM FLC CITRATE ANION HETNAM MG MAGNESIUM ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 7 FLC 8(C6 H5 O7 3-) FORMUL 9 MG 3(MG 2+) FORMUL 10 5GP 3(C10 H14 N5 O8 P) FORMUL 21 HOH *884(H2 O) HELIX 1 1 THR A 67 GLY A 71 5 5 HELIX 2 2 SER A 85 ARG A 100 1 16 HELIX 3 3 PRO A 101 PHE A 103 5 3 HELIX 4 4 ASN A 125 GLY A 142 1 18 HELIX 5 5 THR A 166 LYS A 171 1 6 HELIX 6 6 SER A 197 GLN A 212 1 16 HELIX 7 7 GLN A 212 GLY A 227 1 16 HELIX 8 8 ASN A 239 TYR A 258 1 20 HELIX 9 9 ASP A 262 ASP A 285 1 24 HELIX 10 10 ASP A 289 ALA A 311 1 23 HELIX 11 11 THR A 358 ALA A 362 5 5 HELIX 12 12 PRO A 383 GLY A 388 5 6 HELIX 13 13 LYS A 397 LEU A 412 1 16 HELIX 14 14 SER A 437 ALA A 453 1 17 HELIX 15 15 LEU A 482 LEU A 488 1 7 HELIX 16 16 THR A 515 ILE A 541 1 27 HELIX 17 17 GLY D 1042 ALA D 1046 5 5 HELIX 18 18 THR B 67 ALA B 70 5 4 HELIX 19 19 SER B 85 ARG B 100 1 16 HELIX 20 20 PRO B 101 PHE B 103 5 3 HELIX 21 21 ASN B 125 GLY B 142 1 18 HELIX 22 22 GLU B 169 SER B 173 5 5 HELIX 23 23 SER B 197 GLN B 212 1 16 HELIX 24 24 GLN B 212 GLY B 227 1 16 HELIX 25 25 ASN B 239 TYR B 258 1 20 HELIX 26 26 ASP B 262 ASP B 285 1 24 HELIX 27 27 ASP B 289 ALA B 311 1 23 HELIX 28 28 PRO B 383 GLY B 388 5 6 HELIX 29 29 LYS B 397 GLY B 410 1 14 HELIX 30 30 VAL B 411 MET B 415 5 5 HELIX 31 31 SER B 437 ALA B 453 1 17 HELIX 32 32 LEU B 482 LEU B 488 1 7 HELIX 33 33 THR B 515 ILE B 541 1 27 HELIX 34 34 GLY E 1042 ALA E 1046 5 5 HELIX 35 35 THR C 67 ALA C 70 5 4 HELIX 36 36 SER C 85 ARG C 100 1 16 HELIX 37 37 PRO C 101 PHE C 103 5 3 HELIX 38 38 ASN C 125 GLY C 142 1 18 HELIX 39 39 ASP C 168 SER C 173 5 6 HELIX 40 40 SER C 197 GLN C 212 1 16 HELIX 41 41 GLN C 212 GLY C 227 1 16 HELIX 42 42 ASN C 239 TYR C 258 1 20 HELIX 43 43 ASP C 262 ASP C 285 1 24 HELIX 44 44 ASP C 289 ALA C 311 1 23 HELIX 45 45 THR C 358 ALA C 362 5 5 HELIX 46 46 PRO C 383 GLY C 388 5 6 HELIX 47 47 LYS C 397 LEU C 412 1 16 HELIX 48 48 ALA C 413 MET C 415 5 3 HELIX 49 49 SER C 437 ALA C 453 1 17 HELIX 50 50 LEU C 482 LEU C 488 1 7 HELIX 51 51 THR C 515 ILE C 541 1 27 HELIX 52 52 GLY F 1042 ALA F 1046 5 5 SHEET 1 A 6 ILE A 5 TYR A 11 0 SHEET 2 A 6 HIS A 14 THR A 20 -1 O VAL A 16 N PHE A 9 SHEET 3 A 6 ALA A 29 MET A 35 -1 O MET A 32 N GLU A 19 SHEET 4 A 6 THR A 38 GLY A 46 -1 O VAL A 42 N VAL A 31 SHEET 5 A 6 VAL A 111 SER A 119 -1 O THR A 116 N PHE A 41 SHEET 6 A 6 LEU A 59 GLU A 65 1 N ASN A 62 O VAL A 113 SHEET 1 B 8 GLN A 160 LEU A 163 0 SHEET 2 B 8 GLY A 150 ILE A 157 -1 N GLY A 155 O VAL A 162 SHEET 3 B 8 LEU A 175 GLY A 181 -1 O LEU A 177 N VAL A 154 SHEET 4 B 8 VAL A 186 LEU A 196 -1 O GLU A 190 N VAL A 178 SHEET 5 B 8 ILE A 502 ILE A 509 -1 O SER A 503 N ALA A 193 SHEET 6 B 8 MET A 491 GLY A 497 -1 N LYS A 494 O GLN A 506 SHEET 7 B 8 ALA A 462 GLU A 471 -1 N MET A 466 O PHE A 493 SHEET 8 B 8 ASN A 474 LEU A 478 -1 O ASN A 474 N GLU A 471 SHEET 1 C 6 PHE A 376 ASN A 381 0 SHEET 2 C 6 THR A 424 GLU A 433 1 O VAL A 427 N LEU A 377 SHEET 3 C 6 THR A 348 GLY A 357 -1 N LEU A 351 O GLU A 430 SHEET 4 C 6 GLY A 339 ARG A 345 -1 N GLY A 339 O ALA A 354 SHEET 5 C 6 LEU A 327 THR A 331 -1 N ASP A 328 O THR A 344 SHEET 6 C 6 HIS D1048 ALA D1052 -1 O ALA D1050 N VAL A 329 SHEET 1 D 2 GLN A 363 GLU A 367 0 SHEET 2 D 2 GLY A 370 ASP A 374 -1 O ARG A 372 N LEU A 365 SHEET 1 E 6 ILE B 5 TYR B 11 0 SHEET 2 E 6 HIS B 14 THR B 20 -1 O HIS B 14 N TYR B 11 SHEET 3 E 6 ALA B 29 MET B 35 -1 O MET B 32 N GLU B 19 SHEET 4 E 6 THR B 38 GLY B 46 -1 O VAL B 42 N VAL B 31 SHEET 5 E 6 VAL B 111 SER B 119 -1 O THR B 116 N PHE B 41 SHEET 6 E 6 LEU B 59 GLU B 65 1 N ASN B 62 O VAL B 113 SHEET 1 F 8 GLN B 160 LEU B 163 0 SHEET 2 F 8 GLY B 150 ILE B 157 -1 N GLY B 155 O VAL B 162 SHEET 3 F 8 LEU B 175 GLY B 181 -1 O LEU B 177 N VAL B 154 SHEET 4 F 8 VAL B 186 LEU B 196 -1 O GLU B 190 N VAL B 178 SHEET 5 F 8 ILE B 502 ILE B 509 -1 O SER B 503 N ALA B 193 SHEET 6 F 8 MET B 491 GLY B 497 -1 N LYS B 494 O GLN B 506 SHEET 7 F 8 ALA B 462 GLU B 471 -1 N MET B 466 O PHE B 493 SHEET 8 F 8 ASN B 474 SER B 479 -1 O LEU B 478 N GLY B 467 SHEET 1 G 6 PHE B 376 ASN B 381 0 SHEET 2 G 6 THR B 424 GLU B 433 1 O VAL B 427 N LEU B 377 SHEET 3 G 6 THR B 348 GLY B 357 -1 N LEU B 351 O GLU B 430 SHEET 4 G 6 GLY B 339 ARG B 345 -1 N ARG B 345 O THR B 348 SHEET 5 G 6 LEU B 327 THR B 331 -1 N ASP B 328 O THR B 344 SHEET 6 G 6 HIS E1048 ALA E1052 -1 O ALA E1050 N VAL B 329 SHEET 1 H 2 GLN B 363 LEU B 365 0 SHEET 2 H 2 ARG B 372 ASP B 374 -1 O ASP B 374 N GLN B 363 SHEET 1 I 6 ILE C 5 TYR C 11 0 SHEET 2 I 6 HIS C 14 THR C 20 -1 O HIS C 14 N TYR C 11 SHEET 3 I 6 ALA C 29 MET C 35 -1 O MET C 32 N GLU C 19 SHEET 4 I 6 THR C 38 GLY C 46 -1 O VAL C 42 N VAL C 31 SHEET 5 I 6 VAL C 111 SER C 119 -1 O THR C 116 N PHE C 41 SHEET 6 I 6 LEU C 59 GLU C 65 1 N ASN C 62 O VAL C 113 SHEET 1 J 8 GLN C 160 LEU C 163 0 SHEET 2 J 8 GLY C 150 ILE C 157 -1 N GLY C 155 O VAL C 162 SHEET 3 J 8 LEU C 175 GLY C 181 -1 O LEU C 177 N VAL C 154 SHEET 4 J 8 VAL C 186 LEU C 196 -1 O LEU C 187 N ALA C 180 SHEET 5 J 8 ILE C 502 ILE C 509 -1 O ILE C 502 N LEU C 196 SHEET 6 J 8 MET C 491 GLY C 497 -1 N LYS C 494 O GLN C 506 SHEET 7 J 8 ALA C 462 GLU C 471 -1 N MET C 466 O PHE C 493 SHEET 8 J 8 ASN C 474 SER C 479 -1 O ASN C 474 N GLU C 471 SHEET 1 K 6 PHE C 376 ASN C 381 0 SHEET 2 K 6 THR C 424 GLU C 433 1 O VAL C 427 N LEU C 377 SHEET 3 K 6 THR C 348 GLY C 357 -1 N LEU C 351 O GLU C 430 SHEET 4 K 6 GLY C 339 ARG C 345 -1 N ALA C 341 O VAL C 352 SHEET 5 K 6 LEU C 327 THR C 331 -1 N ASP C 328 O THR C 344 SHEET 6 K 6 HIS F1048 ALA F1052 -1 O ALA F1050 N VAL C 329 SHEET 1 L 2 GLN C 363 GLU C 367 0 SHEET 2 L 2 GLY C 370 ASP C 374 -1 O ARG C 372 N LEU C 365 CISPEP 1 GLY A 147 PRO A 148 0 -0.80 CISPEP 2 GLY B 147 PRO B 148 0 -1.12 CISPEP 3 GLY C 147 PRO C 148 0 -0.98 SITE 1 AC1 11 ARG A 93 ARG A 399 HIS A 403 ASP A 486 SITE 2 AC1 11 ASP A 492 LYS A 494 ASP A 508 FLC A 551 SITE 3 AC1 11 HOH A 701 HOH A1047 HOH A1055 SITE 1 AC2 8 HIS A 403 GLY A 436 SER A 437 SER A 438 SITE 2 AC2 8 SER A 439 LYS A 494 FLC A 550 MG A 552 SITE 1 AC3 3 ALA A 465 ASP A 492 FLC A 551 SITE 1 AC4 3 PHE B 77 5GP B 551 HOH B 899 SITE 1 AC5 4 ASP B 366 5GP B 550 PHE C 77 PHE C 78 SITE 1 AC6 11 LEU B 94 ARG B 153 ASP B 176 VAL B 178 SITE 2 AC6 11 GLU B 190 SER B 191 GLU B 192 ARG B 409 SITE 3 AC6 11 HOH B 731 HOH B1067 HOH B1068 SITE 1 AC7 9 ARG B 93 ARG B 399 HIS B 403 ASP B 486 SITE 2 AC7 9 ASP B 492 LYS B 494 ASP B 508 FLC B 555 SITE 3 AC7 9 HOH B 721 SITE 1 AC8 8 GLU B 192 ARG B 372 ASP B 374 ARG B 405 SITE 2 AC8 8 LYS B 408 ARG B 409 LEU B 412 HOH B 934 SITE 1 AC9 10 HIS B 403 GLY B 436 SER B 437 SER B 438 SITE 2 AC9 10 SER B 439 ASP B 486 HIS B 487 LYS B 494 SITE 3 AC9 10 FLC B 553 MG B 556 SITE 1 BC1 4 SER B 437 ALA B 465 ASP B 492 FLC B 555 SITE 1 BC2 5 PHE A 77 PHE A 78 PHE C 78 ASP C 366 SITE 2 BC2 5 HOH C1083 SITE 1 BC3 9 ARG C 93 ARG C 399 HIS C 403 ASP C 486 SITE 2 BC3 9 ASP C 492 LYS C 494 ASP C 508 FLC C 552 SITE 3 BC3 9 HOH C 562 SITE 1 BC4 11 ARG C 399 HIS C 403 GLY C 436 SER C 437 SITE 2 BC4 11 SER C 438 SER C 439 ASP C 486 HIS C 487 SITE 3 BC4 11 LYS C 494 FLC C 551 MG C 553 SITE 1 BC5 3 ALA C 465 ASP C 492 FLC C 552 CRYST1 176.335 176.335 189.628 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005273 0.00000 CONECT12872128731287812879 CONECT128731287212874 CONECT1287412873128751287612884 CONECT12875128741288012881 CONECT128761287412877 CONECT12877128761288212883 CONECT1287812872 CONECT1287912872 CONECT1288012875 CONECT1288112875 CONECT1288212877 CONECT1288312877 CONECT1288412874 CONECT12885128861289112892 CONECT128861288512887 CONECT1288712886128881288912897 CONECT12888128871289312894 CONECT128891288712890 CONECT12890128891289512896 CONECT1289112885 CONECT1289212885 CONECT1289312888 CONECT1289412888 CONECT1289512890 CONECT1289612890 CONECT1289712887 CONECT1289912900 CONECT129001289912901 CONECT12901129001290212903 CONECT129021290112907 CONECT12903129011290412905 CONECT1290412903 CONECT12905129031290612907 CONECT1290612905 CONECT12907129021290512908 CONECT12908129071290912918 CONECT129091290812910 CONECT129101290912911 CONECT12911129101291212918 CONECT12912129111291312914 CONECT1291312912 CONECT129141291212915 CONECT12915129141291612917 CONECT1291612915 CONECT129171291512918 CONECT12918129081291112917 CONECT1291912920 CONECT129201291912921 CONECT12921129201292212923 CONECT129221292112927 CONECT12923129211292412925 CONECT1292412923 CONECT12925129231292612927 CONECT1292612925 CONECT12927129221292512928 CONECT12928129271292912938 CONECT129291292812930 CONECT129301292912931 CONECT12931129301293212938 CONECT12932129311293312934 CONECT1293312932 CONECT129341293212935 CONECT12935129341293612937 CONECT1293612935 CONECT129371293512938 CONECT12938129281293112937 CONECT12939129401294512946 CONECT129401293912941 CONECT1294112940129421294312951 CONECT12942129411294712948 CONECT129431294112944 CONECT12944129431294912950 CONECT1294512939 CONECT1294612939 CONECT1294712942 CONECT1294812942 CONECT1294912944 CONECT1295012944 CONECT1295112941 CONECT12952129531295812959 CONECT129531295212954 CONECT1295412953129551295612964 CONECT12955129541296012961 CONECT129561295412957 CONECT12957129561296212963 CONECT1295812952 CONECT1295912952 CONECT1296012955 CONECT1296112955 CONECT1296212957 CONECT1296312957 CONECT1296412954 CONECT12965129661297112972 CONECT129661296512967 CONECT1296712966129681296912977 CONECT12968129671297312974 CONECT129691296712970 CONECT12970129691297512976 CONECT1297112965 CONECT1297212965 CONECT1297312968 CONECT1297412968 CONECT1297512970 CONECT1297612970 CONECT1297712967 CONECT12978129791298412985 CONECT129791297812980 CONECT1298012979129811298212990 CONECT12981129801298612987 CONECT129821298012983 CONECT12983129821298812989 CONECT1298412978 CONECT1298512978 CONECT1298612981 CONECT1298712981 CONECT1298812983 CONECT1298912983 CONECT1299012980 CONECT1299212993 CONECT129931299212994 CONECT12994129931299512996 CONECT129951299413000 CONECT12996129941299712998 CONECT1299712996 CONECT12998129961299913000 CONECT1299912998 CONECT13000129951299813001 CONECT13001130001300213011 CONECT130021300113003 CONECT130031300213004 CONECT13004130031300513011 CONECT13005130041300613007 CONECT1300613005 CONECT130071300513008 CONECT13008130071300913010 CONECT1300913008 CONECT130101300813011 CONECT13011130011300413010 CONECT13012130131301813019 CONECT130131301213014 CONECT1301413013130151301613024 CONECT13015130141302013021 CONECT130161301413017 CONECT13017130161302213023 CONECT1301813012 CONECT1301913012 CONECT1302013015 CONECT1302113015 CONECT1302213017 CONECT1302313017 CONECT1302413014 CONECT13025130261303113032 CONECT130261302513027 CONECT1302713026130281302913037 CONECT13028130271303313034 CONECT130291302713030 CONECT13030130291303513036 CONECT1303113025 CONECT1303213025 CONECT1303313028 CONECT1303413028 CONECT1303513030 CONECT1303613030 CONECT1303713027 MASTER 570 0 14 52 66 0 29 613836 6 164 141 END