HEADER ISOMERASE, LYASE 23-FEB-09 3GD6 TITLE CRYSTAL STRUCTURE OF DIVERGENT ENOLASE FROM OCEANOBACILLUS IHEYENSIS TITLE 2 COMPLEXED WITH PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCONATE CYCLOISOMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS HTE831; SOURCE 3 ORGANISM_TAXID: 221109; SOURCE 4 STRAIN: DSM 14371 / JCM 11309 / KCTC 3954 / HTE831; SOURCE 5 GENE: OB2843; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NYSGXRC, TARGET 9375A, DIVERGENT ENOLASE, KEYWDS 2 ISOMERASE, LYASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.M.SAUDER,S.K.BURLEY,J.A.GERLT,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 06-SEP-23 3GD6 1 REMARK REVDAT 3 10-FEB-21 3GD6 1 AUTHOR JRNL REMARK REVDAT 2 21-NOV-18 3GD6 1 AUTHOR REVDAT 1 03-MAR-09 3GD6 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,J.M.SAUDER,S.K.BURLEY,J.A.GERLT, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF DIVERGENT ENOLASE FROM OCEANOBACILLUS JRNL TITL 2 IHEYENSIS COMPLEXED WITH PHOSPHATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3282778.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3114 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5708 REMARK 3 BIN R VALUE (WORKING SET) : 0.4490 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 316 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.66000 REMARK 3 B22 (A**2) : -8.66000 REMARK 3 B33 (A**2) : 17.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.790 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.880 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 52.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : &_1_PARAMETER_INFILE_4 REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3FYY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM PHOSPHATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.50300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.37050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 58.50300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.37050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.50300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.37050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 58.50300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.37050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.50300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.37050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.50300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.37050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.50300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.37050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.50300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.50300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.37050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -117.00600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 92830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -117.00600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -117.00600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -117.00600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -117.00600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -117.00600 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -117.00600 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -117.00600 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -117.00600 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 375 REMARK 465 ASN A 376 REMARK 465 VAL A 377 REMARK 465 THR A 378 REMARK 465 VAL A 379 REMARK 465 HIS A 380 REMARK 465 GLN A 381 REMARK 465 LEU A 382 REMARK 465 GLN A 383 REMARK 465 ASP A 384 REMARK 465 ARG A 385 REMARK 465 THR A 386 REMARK 465 ALA A 387 REMARK 465 ASP A 388 REMARK 465 THR A 389 REMARK 465 LYS A 390 REMARK 465 SER A 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 86 O THR A 86 7555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 16 2.74 -61.45 REMARK 500 TYR A 90 44.63 -104.33 REMARK 500 VAL A 165 -169.05 -116.50 REMARK 500 LYS A 167 -75.91 -68.22 REMARK 500 ASP A 214 78.11 -111.47 REMARK 500 LEU A 300 -159.79 -86.29 REMARK 500 ASP A 349 116.88 -39.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OQY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 3FYY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 3ES7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MALATE REMARK 900 RELATED ID: 3ES8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MALATE REMARK 900 RELATED ID: NYSGXRC-9375A RELATED DB: TARGETDB DBREF 3GD6 A 1 391 UNP Q8EMJ9 Q8EMJ9_OCEIH 1 391 SEQRES 1 A 391 MET LYS ILE THR ASP LEU GLU LEU HIS ALA VAL GLY ILE SEQRES 2 A 391 PRO ARG HIS THR GLY PHE VAL ASN LYS HIS VAL ILE VAL SEQRES 3 A 391 LYS ILE HIS THR ASP GLU GLY LEU THR GLY ILE GLY GLU SEQRES 4 A 391 MET SER ASP PHE SER HIS LEU PRO LEU TYR SER VAL ASP SEQRES 5 A 391 LEU HIS ASP LEU LYS GLN GLY LEU LEU SER ILE LEU LEU SEQRES 6 A 391 GLY GLN ASN PRO PHE ASP LEU MET LYS ILE ASN LYS GLU SEQRES 7 A 391 LEU THR ASP ASN PHE PRO GLU THR MET TYR TYR TYR GLU SEQRES 8 A 391 LYS GLY SER PHE ILE ARG ASN GLY ILE ASP ASN ALA LEU SEQRES 9 A 391 HIS ASP LEU CYS ALA LYS TYR LEU ASP ILE SER VAL SER SEQRES 10 A 391 ASP PHE LEU GLY GLY ARG VAL LYS GLU LYS ILE LYS VAL SEQRES 11 A 391 CYS TYR PRO ILE PHE ARG HIS ARG PHE SER GLU GLU VAL SEQRES 12 A 391 GLU SER ASN LEU ASP VAL VAL ARG GLN LYS LEU GLU GLN SEQRES 13 A 391 GLY PHE ASP VAL PHE ARG LEU TYR VAL GLY LYS ASN LEU SEQRES 14 A 391 ASP ALA ASP GLU GLU PHE LEU SER ARG VAL LYS GLU GLU SEQRES 15 A 391 PHE GLY SER ARG VAL ARG ILE LYS SER TYR ASP PHE SER SEQRES 16 A 391 HIS LEU LEU ASN TRP LYS ASP ALA HIS ARG ALA ILE LYS SEQRES 17 A 391 ARG LEU THR LYS TYR ASP LEU GLY LEU GLU MET ILE GLU SEQRES 18 A 391 SER PRO ALA PRO ARG ASN ASP PHE ASP GLY LEU TYR GLN SEQRES 19 A 391 LEU ARG LEU LYS THR ASP TYR PRO ILE SER GLU HIS VAL SEQRES 20 A 391 TRP SER PHE LYS GLN GLN GLN GLU MET ILE LYS LYS ASP SEQRES 21 A 391 ALA ILE ASP ILE PHE ASN ILE SER PRO VAL PHE ILE GLY SEQRES 22 A 391 GLY LEU THR SER ALA LYS LYS ALA ALA TYR ALA ALA GLU SEQRES 23 A 391 VAL ALA SER LYS ASP VAL VAL LEU GLY THR THR GLN GLU SEQRES 24 A 391 LEU SER VAL GLY THR ALA ALA MET ALA HIS LEU GLY CYS SEQRES 25 A 391 SER LEU THR ASN ILE ASN HIS THR SER ASP PRO THR GLY SEQRES 26 A 391 PRO GLU LEU TYR VAL GLY ASP VAL VAL LYS ASN ARG VAL SEQRES 27 A 391 THR TYR LYS ASP GLY TYR LEU TYR ALA PRO ASP ARG SER SEQRES 28 A 391 VAL LYS GLY LEU GLY ILE GLU LEU ASP GLU SER LEU LEU SEQRES 29 A 391 ALA LYS TYR GLN VAL PRO ASP LEU SER TRP ASP ASN VAL SEQRES 30 A 391 THR VAL HIS GLN LEU GLN ASP ARG THR ALA ASP THR LYS SEQRES 31 A 391 SER HET PO4 A 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *196(H2 O) HELIX 1 1 ASP A 52 LEU A 65 1 14 HELIX 2 2 ASP A 71 PHE A 83 1 13 HELIX 3 3 GLU A 91 ASP A 113 1 23 HELIX 4 4 SER A 115 LEU A 120 1 6 HELIX 5 5 GLU A 141 GLN A 156 1 16 HELIX 6 6 ASN A 168 GLY A 184 1 17 HELIX 7 7 SER A 185 VAL A 187 5 3 HELIX 8 8 ASN A 199 THR A 211 1 13 HELIX 9 9 ASP A 228 THR A 239 1 12 HELIX 10 10 SER A 249 ASP A 260 1 12 HELIX 11 11 SER A 268 GLY A 273 1 6 HELIX 12 12 GLY A 274 ALA A 288 1 15 HELIX 13 13 LEU A 300 CYS A 312 1 13 HELIX 14 14 THR A 324 TYR A 329 5 6 HELIX 15 15 ASP A 360 TYR A 367 1 8 SHEET 1 A 3 ILE A 3 PRO A 14 0 SHEET 2 A 3 VAL A 20 THR A 30 -1 O ILE A 25 N HIS A 9 SHEET 3 A 3 THR A 35 MET A 40 -1 O GLY A 38 N VAL A 26 SHEET 1 B 3 LYS A 127 LYS A 129 0 SHEET 2 B 3 TYR A 344 TYR A 346 -1 O LEU A 345 N ILE A 128 SHEET 3 B 3 TYR A 340 LYS A 341 -1 N LYS A 341 O TYR A 344 SHEET 1 C 7 TYR A 132 ILE A 134 0 SHEET 2 C 7 VAL A 160 TYR A 164 1 O TYR A 164 N ILE A 134 SHEET 3 C 7 ARG A 188 ASP A 193 1 O ASP A 193 N LEU A 163 SHEET 4 C 7 MET A 219 GLU A 221 1 N MET A 219 O LYS A 190 SHEET 5 C 7 ILE A 243 HIS A 246 1 O SER A 244 N ILE A 220 SHEET 6 C 7 ILE A 264 ILE A 267 1 O ASN A 266 N GLU A 245 SHEET 7 C 7 ASP A 291 LEU A 294 1 O ASP A 291 N PHE A 265 CISPEP 1 LEU A 46 PRO A 47 0 0.38 SITE 1 AC1 9 TYR A 89 TYR A 164 ASP A 193 SER A 195 SITE 2 AC1 9 HIS A 196 SER A 222 HIS A 246 HOH A 501 SITE 3 AC1 9 HOH A 622 CRYST1 117.006 117.006 134.741 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007422 0.00000