data_3GDW # _entry.id 3GDW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GDW RCSB RCSB051738 WWPDB D_1000051738 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC62877.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GDW _pdbx_database_status.recvd_initial_deposition_date 2009-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Sather, A.' 2 'Buck, K.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of sigma-54 interaction domain protein from Enterococcus faecalis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Sather, A.' 2 primary 'Buck, K.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3GDW _cell.length_a 43.127 _cell.length_b 71.418 _cell.length_c 94.502 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GDW _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sigma-54 interaction domain protein' 15903.516 2 ? ? 'UNP residues 544-679' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 200 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNANVGVFVL(MSE)HGDSTASS(MSE)LKTAQELLGTSIGTA(MSE)N(MSE)PLT(MSE)EVQT(MSE)YEQLRNQVI TQKESLNNGILLLTD(MSE)GSLNSFGN(MSE)LFEETGIRTKAIT(MSE)TST(MSE)IVLEAIR(MSE)ASVGRSLED IYQNIQLSFESVVREQFRSSLQK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNANVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGN MLFEETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQNIQLSFESVVREQFRSSLQK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC62877.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ASN n 1 5 VAL n 1 6 GLY n 1 7 VAL n 1 8 PHE n 1 9 VAL n 1 10 LEU n 1 11 MSE n 1 12 HIS n 1 13 GLY n 1 14 ASP n 1 15 SER n 1 16 THR n 1 17 ALA n 1 18 SER n 1 19 SER n 1 20 MSE n 1 21 LEU n 1 22 LYS n 1 23 THR n 1 24 ALA n 1 25 GLN n 1 26 GLU n 1 27 LEU n 1 28 LEU n 1 29 GLY n 1 30 THR n 1 31 SER n 1 32 ILE n 1 33 GLY n 1 34 THR n 1 35 ALA n 1 36 MSE n 1 37 ASN n 1 38 MSE n 1 39 PRO n 1 40 LEU n 1 41 THR n 1 42 MSE n 1 43 GLU n 1 44 VAL n 1 45 GLN n 1 46 THR n 1 47 MSE n 1 48 TYR n 1 49 GLU n 1 50 GLN n 1 51 LEU n 1 52 ARG n 1 53 ASN n 1 54 GLN n 1 55 VAL n 1 56 ILE n 1 57 THR n 1 58 GLN n 1 59 LYS n 1 60 GLU n 1 61 SER n 1 62 LEU n 1 63 ASN n 1 64 ASN n 1 65 GLY n 1 66 ILE n 1 67 LEU n 1 68 LEU n 1 69 LEU n 1 70 THR n 1 71 ASP n 1 72 MSE n 1 73 GLY n 1 74 SER n 1 75 LEU n 1 76 ASN n 1 77 SER n 1 78 PHE n 1 79 GLY n 1 80 ASN n 1 81 MSE n 1 82 LEU n 1 83 PHE n 1 84 GLU n 1 85 GLU n 1 86 THR n 1 87 GLY n 1 88 ILE n 1 89 ARG n 1 90 THR n 1 91 LYS n 1 92 ALA n 1 93 ILE n 1 94 THR n 1 95 MSE n 1 96 THR n 1 97 SER n 1 98 THR n 1 99 MSE n 1 100 ILE n 1 101 VAL n 1 102 LEU n 1 103 GLU n 1 104 ALA n 1 105 ILE n 1 106 ARG n 1 107 MSE n 1 108 ALA n 1 109 SER n 1 110 VAL n 1 111 GLY n 1 112 ARG n 1 113 SER n 1 114 LEU n 1 115 GLU n 1 116 ASP n 1 117 ILE n 1 118 TYR n 1 119 GLN n 1 120 ASN n 1 121 ILE n 1 122 GLN n 1 123 LEU n 1 124 SER n 1 125 PHE n 1 126 GLU n 1 127 SER n 1 128 VAL n 1 129 VAL n 1 130 ARG n 1 131 GLU n 1 132 GLN n 1 133 PHE n 1 134 ARG n 1 135 SER n 1 136 SER n 1 137 LEU n 1 138 GLN n 1 139 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene EF_1010 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain V583 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterococcus faecalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226185 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700802 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q836U6_ENTFA _struct_ref.pdbx_db_accession Q836U6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGNMLF EETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQNIQLSFESVVREQFRSSLQK ; _struct_ref.pdbx_align_begin 544 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GDW A 4 ? 139 ? Q836U6 544 ? 679 ? 544 679 2 1 3GDW B 4 ? 139 ? Q836U6 544 ? 679 ? 544 679 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GDW SER A 1 ? UNP Q836U6 ? ? 'EXPRESSION TAG' 541 1 1 3GDW ASN A 2 ? UNP Q836U6 ? ? 'EXPRESSION TAG' 542 2 1 3GDW ALA A 3 ? UNP Q836U6 ? ? 'EXPRESSION TAG' 543 3 2 3GDW SER B 1 ? UNP Q836U6 ? ? 'EXPRESSION TAG' 541 4 2 3GDW ASN B 2 ? UNP Q836U6 ? ? 'EXPRESSION TAG' 542 5 2 3GDW ALA B 3 ? UNP Q836U6 ? ? 'EXPRESSION TAG' 543 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GDW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.1 M Sodium malonate, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM Q315r' _diffrn_detector.pdbx_collection_date 2009-01-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97931 # _reflns.entry_id 3GDW _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.00 _reflns.number_obs 20315 _reflns.number_all 20362 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 65.7 _reflns.B_iso_Wilson_estimate 34.8 _reflns.pdbx_redundancy 13.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.606 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.35 _reflns_shell.pdbx_redundancy 13.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 483 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GDW _refine.ls_number_reflns_obs 20261 _refine.ls_number_reflns_all 20261 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.56 _refine.ls_R_factor_obs 0.18503 _refine.ls_R_factor_all 0.18503 _refine.ls_R_factor_R_work 0.18349 _refine.ls_R_factor_R_free 0.21431 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1041 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.B_iso_mean 28.495 _refine.aniso_B[1][1] 1.97 _refine.aniso_B[2][2] -0.75 _refine.aniso_B[3][3] -1.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.187 _refine.pdbx_overall_ESU_R_Free 0.155 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 8.777 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2088 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 200 _refine_hist.number_atoms_total 2292 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2230 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.329 1.965 ? 3018 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.973 5.000 ? 296 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.412 25.625 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.239 15.000 ? 433 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.405 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 363 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1639 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.724 1.500 ? 1424 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.357 2.000 ? 2316 'X-RAY DIFFRACTION' ? r_scbond_it 2.701 3.000 ? 806 'X-RAY DIFFRACTION' ? r_scangle_it 4.315 4.500 ? 702 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 1363 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.percent_reflns_obs 97.21 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 68 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1431 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GDW _struct.title 'Crystal structure of sigma-54 interaction domain protein from Enterococcus faecalis' _struct.pdbx_descriptor 'Sigma-54 interaction domain protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GDW _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Enterococcus faecalis, sigma-54 interaction domain protein, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, ATP-binding, Nucleotide-binding, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? GLY A 29 ? SER A 555 GLY A 569 1 ? 15 HELX_P HELX_P2 2 GLU A 43 ? THR A 57 ? GLU A 583 THR A 597 1 ? 15 HELX_P HELX_P3 3 GLN A 58 ? ASN A 63 ? GLN A 598 ASN A 603 5 ? 6 HELX_P HELX_P4 4 MSE A 72 ? ASN A 76 ? MSE A 612 ASN A 616 5 ? 5 HELX_P HELX_P5 5 SER A 77 ? GLY A 87 ? SER A 617 GLY A 627 1 ? 11 HELX_P HELX_P6 6 SER A 97 ? VAL A 110 ? SER A 637 VAL A 650 1 ? 14 HELX_P HELX_P7 7 SER A 113 ? PHE A 133 ? SER A 653 PHE A 673 1 ? 21 HELX_P HELX_P8 8 SER B 15 ? GLY B 29 ? SER B 555 GLY B 569 1 ? 15 HELX_P HELX_P9 9 GLU B 43 ? GLN B 58 ? GLU B 583 GLN B 598 1 ? 16 HELX_P HELX_P10 10 LYS B 59 ? LEU B 62 ? LYS B 599 LEU B 602 5 ? 4 HELX_P HELX_P11 11 MSE B 72 ? ASN B 76 ? MSE B 612 ASN B 616 5 ? 5 HELX_P HELX_P12 12 SER B 77 ? GLY B 87 ? SER B 617 GLY B 627 1 ? 11 HELX_P HELX_P13 13 SER B 97 ? VAL B 110 ? SER B 637 VAL B 650 1 ? 14 HELX_P HELX_P14 14 SER B 113 ? SER B 136 ? SER B 653 SER B 676 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 10 C ? ? ? 1_555 A MSE 11 N ? ? A LEU 550 A MSE 551 1_555 ? ? ? ? ? ? ? 1.339 ? covale2 covale ? ? A MSE 11 C ? ? ? 1_555 A HIS 12 N ? ? A MSE 551 A HIS 552 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A SER 19 C ? ? ? 1_555 A MSE 20 N ? ? A SER 559 A MSE 560 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? A MSE 20 C ? ? ? 1_555 A LEU 21 N ? ? A MSE 560 A LEU 561 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A ALA 35 C ? ? ? 1_555 A MSE 36 N ? ? A ALA 575 A MSE 576 1_555 ? ? ? ? ? ? ? 1.322 ? covale6 covale ? ? A MSE 36 C ? ? ? 1_555 A ASN 37 N ? ? A MSE 576 A ASN 577 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A ASN 37 C ? ? ? 1_555 A MSE 38 N ? ? A ASN 577 A MSE 578 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A MSE 38 C ? ? ? 1_555 A PRO 39 N ? ? A MSE 578 A PRO 579 1_555 ? ? ? ? ? ? ? 1.340 ? covale9 covale ? ? A THR 41 C ? ? ? 1_555 A MSE 42 N ? ? A THR 581 A MSE 582 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? A MSE 42 C ? ? ? 1_555 A GLU 43 N ? ? A MSE 582 A GLU 583 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A THR 46 C ? ? ? 1_555 A MSE 47 N ? ? A THR 586 A MSE 587 1_555 ? ? ? ? ? ? ? 1.340 ? covale12 covale ? ? A MSE 47 C ? ? ? 1_555 A TYR 48 N ? ? A MSE 587 A TYR 588 1_555 ? ? ? ? ? ? ? 1.346 ? covale13 covale ? ? A ASP 71 C ? ? ? 1_555 A MSE 72 N ? ? A ASP 611 A MSE 612 1_555 ? ? ? ? ? ? ? 1.317 ? covale14 covale ? ? A MSE 72 C ? ? ? 1_555 A GLY 73 N ? ? A MSE 612 A GLY 613 1_555 ? ? ? ? ? ? ? 1.319 ? covale15 covale ? ? A ASN 80 C ? ? ? 1_555 A MSE 81 N ? ? A ASN 620 A MSE 621 1_555 ? ? ? ? ? ? ? 1.328 ? covale16 covale ? ? A MSE 81 C ? ? ? 1_555 A LEU 82 N ? ? A MSE 621 A LEU 622 1_555 ? ? ? ? ? ? ? 1.332 ? covale17 covale ? ? A THR 94 C A ? ? 1_555 A MSE 95 N ? ? A THR 634 A MSE 635 1_555 ? ? ? ? ? ? ? 1.332 ? covale18 covale ? ? A THR 94 C B ? ? 1_555 A MSE 95 N ? ? A THR 634 A MSE 635 1_555 ? ? ? ? ? ? ? 1.330 ? covale19 covale ? ? A MSE 95 C ? ? ? 1_555 A THR 96 N ? ? A MSE 635 A THR 636 1_555 ? ? ? ? ? ? ? 1.324 ? covale20 covale ? ? A THR 98 C ? ? ? 1_555 A MSE 99 N A ? A THR 638 A MSE 639 1_555 ? ? ? ? ? ? ? 1.326 ? covale21 covale ? ? A THR 98 C ? ? ? 1_555 A MSE 99 N B ? A THR 638 A MSE 639 1_555 ? ? ? ? ? ? ? 1.334 ? covale22 covale ? ? A THR 98 C ? ? ? 1_555 A MSE 99 N C ? A THR 638 A MSE 639 1_555 ? ? ? ? ? ? ? 1.332 ? covale23 covale ? ? A MSE 99 C A ? ? 1_555 A ILE 100 N ? ? A MSE 639 A ILE 640 1_555 ? ? ? ? ? ? ? 1.336 ? covale24 covale ? ? A MSE 99 C B ? ? 1_555 A ILE 100 N ? ? A MSE 639 A ILE 640 1_555 ? ? ? ? ? ? ? 1.334 ? covale25 covale ? ? A MSE 99 C C ? ? 1_555 A ILE 100 N ? ? A MSE 639 A ILE 640 1_555 ? ? ? ? ? ? ? 1.335 ? covale26 covale ? ? A ARG 106 C A ? ? 1_555 A MSE 107 N ? ? A ARG 646 A MSE 647 1_555 ? ? ? ? ? ? ? 1.327 ? covale27 covale ? ? A ARG 106 C B ? ? 1_555 A MSE 107 N ? ? A ARG 646 A MSE 647 1_555 ? ? ? ? ? ? ? 1.330 ? covale28 covale ? ? A MSE 107 C ? ? ? 1_555 A ALA 108 N ? ? A MSE 647 A ALA 648 1_555 ? ? ? ? ? ? ? 1.327 ? covale29 covale ? ? B LEU 10 C ? ? ? 1_555 B MSE 11 N ? ? B LEU 550 B MSE 551 1_555 ? ? ? ? ? ? ? 1.339 ? covale30 covale ? ? B MSE 11 C ? ? ? 1_555 B HIS 12 N ? ? B MSE 551 B HIS 552 1_555 ? ? ? ? ? ? ? 1.325 ? covale31 covale ? ? B SER 19 C ? ? ? 1_555 B MSE 20 N ? ? B SER 559 B MSE 560 1_555 ? ? ? ? ? ? ? 1.334 ? covale32 covale ? ? B MSE 20 C ? ? ? 1_555 B LEU 21 N ? ? B MSE 560 B LEU 561 1_555 ? ? ? ? ? ? ? 1.343 ? covale33 covale ? ? B ALA 35 C ? ? ? 1_555 B MSE 36 N ? ? B ALA 575 B MSE 576 1_555 ? ? ? ? ? ? ? 1.339 ? covale34 covale ? ? B MSE 36 C ? ? ? 1_555 B ASN 37 N ? ? B MSE 576 B ASN 577 1_555 ? ? ? ? ? ? ? 1.328 ? covale35 covale ? ? B ASN 37 C ? ? ? 1_555 B MSE 38 N ? ? B ASN 577 B MSE 578 1_555 ? ? ? ? ? ? ? 1.329 ? covale36 covale ? ? B MSE 38 C ? ? ? 1_555 B PRO 39 N ? ? B MSE 578 B PRO 579 1_555 ? ? ? ? ? ? ? 1.349 ? covale37 covale ? ? B THR 41 C ? ? ? 1_555 B MSE 42 N ? ? B THR 581 B MSE 582 1_555 ? ? ? ? ? ? ? 1.339 ? covale38 covale ? ? B MSE 42 C ? ? ? 1_555 B GLU 43 N ? ? B MSE 582 B GLU 583 1_555 ? ? ? ? ? ? ? 1.333 ? covale39 covale ? ? B THR 46 C ? ? ? 1_555 B MSE 47 N ? ? B THR 586 B MSE 587 1_555 ? ? ? ? ? ? ? 1.329 ? covale40 covale ? ? B MSE 47 C ? ? ? 1_555 B TYR 48 N ? ? B MSE 587 B TYR 588 1_555 ? ? ? ? ? ? ? 1.324 ? covale41 covale ? ? B ASP 71 C ? ? ? 1_555 B MSE 72 N ? ? B ASP 611 B MSE 612 1_555 ? ? ? ? ? ? ? 1.330 ? covale42 covale ? ? B MSE 72 C ? ? ? 1_555 B GLY 73 N ? ? B MSE 612 B GLY 613 1_555 ? ? ? ? ? ? ? 1.336 ? covale43 covale ? ? B ASN 80 C ? ? ? 1_555 B MSE 81 N ? ? B ASN 620 B MSE 621 1_555 ? ? ? ? ? ? ? 1.335 ? covale44 covale ? ? B MSE 81 C ? ? ? 1_555 B LEU 82 N ? ? B MSE 621 B LEU 622 1_555 ? ? ? ? ? ? ? 1.328 ? covale45 covale ? ? B THR 94 C A ? ? 1_555 B MSE 95 N ? ? B THR 634 B MSE 635 1_555 ? ? ? ? ? ? ? 1.339 ? covale46 covale ? ? B THR 94 C B ? ? 1_555 B MSE 95 N ? ? B THR 634 B MSE 635 1_555 ? ? ? ? ? ? ? 1.338 ? covale47 covale ? ? B MSE 95 C ? ? ? 1_555 B THR 96 N ? ? B MSE 635 B THR 636 1_555 ? ? ? ? ? ? ? 1.330 ? covale48 covale ? ? B THR 98 C ? ? ? 1_555 B MSE 99 N ? ? B THR 638 B MSE 639 1_555 ? ? ? ? ? ? ? 1.334 ? covale49 covale ? ? B MSE 99 C ? ? ? 1_555 B ILE 100 N ? ? B MSE 639 B ILE 640 1_555 ? ? ? ? ? ? ? 1.331 ? covale50 covale ? ? B ARG 106 C ? ? ? 1_555 B MSE 107 N ? ? B ARG 646 B MSE 647 1_555 ? ? ? ? ? ? ? 1.330 ? covale51 covale ? ? B MSE 107 C ? ? ? 1_555 B ALA 108 N ? ? B MSE 647 B ALA 648 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 34 ? MSE A 38 ? THR A 574 MSE A 578 A 2 GLY A 6 ? HIS A 12 ? GLY A 546 HIS A 552 A 3 ILE A 66 ? THR A 70 ? ILE A 606 THR A 610 A 4 THR A 90 ? ILE A 93 ? THR A 630 ILE A 633 B 1 THR B 34 ? MSE B 38 ? THR B 574 MSE B 578 B 2 GLY B 6 ? HIS B 12 ? GLY B 546 HIS B 552 B 3 ILE B 66 ? THR B 70 ? ILE B 606 THR B 610 B 4 THR B 90 ? ILE B 93 ? THR B 630 ILE B 633 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 38 ? O MSE A 578 N MSE A 11 ? N MSE A 551 A 2 3 N LEU A 10 ? N LEU A 550 O LEU A 69 ? O LEU A 609 A 3 4 N LEU A 68 ? N LEU A 608 O LYS A 91 ? O LYS A 631 B 1 2 O THR B 34 ? O THR B 574 N VAL B 9 ? N VAL B 549 B 2 3 N GLY B 6 ? N GLY B 546 O LEU B 67 ? O LEU B 607 B 3 4 N THR B 70 ? N THR B 610 O ILE B 93 ? O ILE B 633 # _database_PDB_matrix.entry_id 3GDW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GDW _atom_sites.fract_transf_matrix[1][1] 0.023187 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014002 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010582 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 541 541 SER ALA A . n A 1 2 ASN 2 542 542 ASN ASN A . n A 1 3 ALA 3 543 543 ALA ALA A . n A 1 4 ASN 4 544 544 ASN ASN A . n A 1 5 VAL 5 545 545 VAL VAL A . n A 1 6 GLY 6 546 546 GLY GLY A . n A 1 7 VAL 7 547 547 VAL VAL A . n A 1 8 PHE 8 548 548 PHE PHE A . n A 1 9 VAL 9 549 549 VAL VAL A . n A 1 10 LEU 10 550 550 LEU LEU A . n A 1 11 MSE 11 551 551 MSE MSE A . n A 1 12 HIS 12 552 552 HIS HIS A . n A 1 13 GLY 13 553 553 GLY GLY A . n A 1 14 ASP 14 554 554 ASP ASP A . n A 1 15 SER 15 555 555 SER SER A . n A 1 16 THR 16 556 556 THR THR A . n A 1 17 ALA 17 557 557 ALA ALA A . n A 1 18 SER 18 558 558 SER SER A . n A 1 19 SER 19 559 559 SER SER A . n A 1 20 MSE 20 560 560 MSE MSE A . n A 1 21 LEU 21 561 561 LEU LEU A . n A 1 22 LYS 22 562 562 LYS LYS A . n A 1 23 THR 23 563 563 THR THR A . n A 1 24 ALA 24 564 564 ALA ALA A . n A 1 25 GLN 25 565 565 GLN GLN A . n A 1 26 GLU 26 566 566 GLU GLU A . n A 1 27 LEU 27 567 567 LEU LEU A . n A 1 28 LEU 28 568 568 LEU LEU A . n A 1 29 GLY 29 569 569 GLY GLY A . n A 1 30 THR 30 570 570 THR THR A . n A 1 31 SER 31 571 571 SER SER A . n A 1 32 ILE 32 572 572 ILE ILE A . n A 1 33 GLY 33 573 573 GLY GLY A . n A 1 34 THR 34 574 574 THR THR A . n A 1 35 ALA 35 575 575 ALA ALA A . n A 1 36 MSE 36 576 576 MSE MSE A . n A 1 37 ASN 37 577 577 ASN ASN A . n A 1 38 MSE 38 578 578 MSE MSE A . n A 1 39 PRO 39 579 579 PRO PRO A . n A 1 40 LEU 40 580 580 LEU LEU A . n A 1 41 THR 41 581 581 THR THR A . n A 1 42 MSE 42 582 582 MSE MSE A . n A 1 43 GLU 43 583 583 GLU GLU A . n A 1 44 VAL 44 584 584 VAL VAL A . n A 1 45 GLN 45 585 585 GLN GLN A . n A 1 46 THR 46 586 586 THR THR A . n A 1 47 MSE 47 587 587 MSE MSE A . n A 1 48 TYR 48 588 588 TYR TYR A . n A 1 49 GLU 49 589 589 GLU GLU A . n A 1 50 GLN 50 590 590 GLN GLN A . n A 1 51 LEU 51 591 591 LEU LEU A . n A 1 52 ARG 52 592 592 ARG ARG A . n A 1 53 ASN 53 593 593 ASN ASN A . n A 1 54 GLN 54 594 594 GLN GLN A . n A 1 55 VAL 55 595 595 VAL VAL A . n A 1 56 ILE 56 596 596 ILE ILE A . n A 1 57 THR 57 597 597 THR THR A . n A 1 58 GLN 58 598 598 GLN GLN A . n A 1 59 LYS 59 599 599 LYS LYS A . n A 1 60 GLU 60 600 600 GLU GLU A . n A 1 61 SER 61 601 601 SER SER A . n A 1 62 LEU 62 602 602 LEU LEU A . n A 1 63 ASN 63 603 603 ASN ASN A . n A 1 64 ASN 64 604 604 ASN ASN A . n A 1 65 GLY 65 605 605 GLY GLY A . n A 1 66 ILE 66 606 606 ILE ILE A . n A 1 67 LEU 67 607 607 LEU LEU A . n A 1 68 LEU 68 608 608 LEU LEU A . n A 1 69 LEU 69 609 609 LEU LEU A . n A 1 70 THR 70 610 610 THR THR A . n A 1 71 ASP 71 611 611 ASP ASP A . n A 1 72 MSE 72 612 612 MSE MSE A . n A 1 73 GLY 73 613 613 GLY GLY A . n A 1 74 SER 74 614 614 SER SER A . n A 1 75 LEU 75 615 615 LEU LEU A . n A 1 76 ASN 76 616 616 ASN ASN A . n A 1 77 SER 77 617 617 SER SER A . n A 1 78 PHE 78 618 618 PHE PHE A . n A 1 79 GLY 79 619 619 GLY GLY A . n A 1 80 ASN 80 620 620 ASN ASN A . n A 1 81 MSE 81 621 621 MSE MSE A . n A 1 82 LEU 82 622 622 LEU LEU A . n A 1 83 PHE 83 623 623 PHE PHE A . n A 1 84 GLU 84 624 624 GLU GLU A . n A 1 85 GLU 85 625 625 GLU GLU A . n A 1 86 THR 86 626 626 THR THR A . n A 1 87 GLY 87 627 627 GLY GLY A . n A 1 88 ILE 88 628 628 ILE ILE A . n A 1 89 ARG 89 629 629 ARG ARG A . n A 1 90 THR 90 630 630 THR THR A . n A 1 91 LYS 91 631 631 LYS LYS A . n A 1 92 ALA 92 632 632 ALA ALA A . n A 1 93 ILE 93 633 633 ILE ILE A . n A 1 94 THR 94 634 634 THR THR A . n A 1 95 MSE 95 635 635 MSE MSE A . n A 1 96 THR 96 636 636 THR THR A . n A 1 97 SER 97 637 637 SER SER A . n A 1 98 THR 98 638 638 THR THR A . n A 1 99 MSE 99 639 639 MSE MSE A . n A 1 100 ILE 100 640 640 ILE ILE A . n A 1 101 VAL 101 641 641 VAL VAL A . n A 1 102 LEU 102 642 642 LEU LEU A . n A 1 103 GLU 103 643 643 GLU GLU A . n A 1 104 ALA 104 644 644 ALA ALA A . n A 1 105 ILE 105 645 645 ILE ILE A . n A 1 106 ARG 106 646 646 ARG ARG A . n A 1 107 MSE 107 647 647 MSE MSE A . n A 1 108 ALA 108 648 648 ALA ALA A . n A 1 109 SER 109 649 649 SER SER A . n A 1 110 VAL 110 650 650 VAL VAL A . n A 1 111 GLY 111 651 651 GLY GLY A . n A 1 112 ARG 112 652 652 ARG ARG A . n A 1 113 SER 113 653 653 SER SER A . n A 1 114 LEU 114 654 654 LEU LEU A . n A 1 115 GLU 115 655 655 GLU GLU A . n A 1 116 ASP 116 656 656 ASP ASP A . n A 1 117 ILE 117 657 657 ILE ILE A . n A 1 118 TYR 118 658 658 TYR TYR A . n A 1 119 GLN 119 659 659 GLN GLN A . n A 1 120 ASN 120 660 660 ASN ASN A . n A 1 121 ILE 121 661 661 ILE ILE A . n A 1 122 GLN 122 662 662 GLN GLN A . n A 1 123 LEU 123 663 663 LEU LEU A . n A 1 124 SER 124 664 664 SER SER A . n A 1 125 PHE 125 665 665 PHE PHE A . n A 1 126 GLU 126 666 666 GLU GLU A . n A 1 127 SER 127 667 667 SER SER A . n A 1 128 VAL 128 668 668 VAL VAL A . n A 1 129 VAL 129 669 669 VAL VAL A . n A 1 130 ARG 130 670 670 ARG ARG A . n A 1 131 GLU 131 671 671 GLU GLU A . n A 1 132 GLN 132 672 672 GLN GLN A . n A 1 133 PHE 133 673 673 PHE PHE A . n A 1 134 ARG 134 674 674 ARG ARG A . n A 1 135 SER 135 675 675 SER ALA A . n A 1 136 SER 136 676 ? ? ? A . n A 1 137 LEU 137 677 ? ? ? A . n A 1 138 GLN 138 678 ? ? ? A . n A 1 139 LYS 139 679 ? ? ? A . n B 1 1 SER 1 541 541 SER ALA B . n B 1 2 ASN 2 542 542 ASN ASN B . n B 1 3 ALA 3 543 543 ALA ALA B . n B 1 4 ASN 4 544 544 ASN ASN B . n B 1 5 VAL 5 545 545 VAL VAL B . n B 1 6 GLY 6 546 546 GLY GLY B . n B 1 7 VAL 7 547 547 VAL VAL B . n B 1 8 PHE 8 548 548 PHE PHE B . n B 1 9 VAL 9 549 549 VAL VAL B . n B 1 10 LEU 10 550 550 LEU LEU B . n B 1 11 MSE 11 551 551 MSE MSE B . n B 1 12 HIS 12 552 552 HIS HIS B . n B 1 13 GLY 13 553 553 GLY GLY B . n B 1 14 ASP 14 554 554 ASP ASP B . n B 1 15 SER 15 555 555 SER SER B . n B 1 16 THR 16 556 556 THR THR B . n B 1 17 ALA 17 557 557 ALA ALA B . n B 1 18 SER 18 558 558 SER SER B . n B 1 19 SER 19 559 559 SER SER B . n B 1 20 MSE 20 560 560 MSE MSE B . n B 1 21 LEU 21 561 561 LEU LEU B . n B 1 22 LYS 22 562 562 LYS LYS B . n B 1 23 THR 23 563 563 THR THR B . n B 1 24 ALA 24 564 564 ALA ALA B . n B 1 25 GLN 25 565 565 GLN GLN B . n B 1 26 GLU 26 566 566 GLU GLU B . n B 1 27 LEU 27 567 567 LEU LEU B . n B 1 28 LEU 28 568 568 LEU LEU B . n B 1 29 GLY 29 569 569 GLY GLY B . n B 1 30 THR 30 570 570 THR THR B . n B 1 31 SER 31 571 571 SER SER B . n B 1 32 ILE 32 572 572 ILE ILE B . n B 1 33 GLY 33 573 573 GLY GLY B . n B 1 34 THR 34 574 574 THR THR B . n B 1 35 ALA 35 575 575 ALA ALA B . n B 1 36 MSE 36 576 576 MSE MSE B . n B 1 37 ASN 37 577 577 ASN ASN B . n B 1 38 MSE 38 578 578 MSE MSE B . n B 1 39 PRO 39 579 579 PRO PRO B . n B 1 40 LEU 40 580 580 LEU LEU B . n B 1 41 THR 41 581 581 THR THR B . n B 1 42 MSE 42 582 582 MSE MSE B . n B 1 43 GLU 43 583 583 GLU GLU B . n B 1 44 VAL 44 584 584 VAL VAL B . n B 1 45 GLN 45 585 585 GLN GLN B . n B 1 46 THR 46 586 586 THR THR B . n B 1 47 MSE 47 587 587 MSE MSE B . n B 1 48 TYR 48 588 588 TYR TYR B . n B 1 49 GLU 49 589 589 GLU GLU B . n B 1 50 GLN 50 590 590 GLN GLN B . n B 1 51 LEU 51 591 591 LEU LEU B . n B 1 52 ARG 52 592 592 ARG ARG B . n B 1 53 ASN 53 593 593 ASN ASN B . n B 1 54 GLN 54 594 594 GLN GLN B . n B 1 55 VAL 55 595 595 VAL VAL B . n B 1 56 ILE 56 596 596 ILE ILE B . n B 1 57 THR 57 597 597 THR THR B . n B 1 58 GLN 58 598 598 GLN GLN B . n B 1 59 LYS 59 599 599 LYS LYS B . n B 1 60 GLU 60 600 600 GLU GLU B . n B 1 61 SER 61 601 601 SER SER B . n B 1 62 LEU 62 602 602 LEU LEU B . n B 1 63 ASN 63 603 603 ASN ASN B . n B 1 64 ASN 64 604 604 ASN ASN B . n B 1 65 GLY 65 605 605 GLY GLY B . n B 1 66 ILE 66 606 606 ILE ILE B . n B 1 67 LEU 67 607 607 LEU LEU B . n B 1 68 LEU 68 608 608 LEU LEU B . n B 1 69 LEU 69 609 609 LEU LEU B . n B 1 70 THR 70 610 610 THR THR B . n B 1 71 ASP 71 611 611 ASP ASP B . n B 1 72 MSE 72 612 612 MSE MSE B . n B 1 73 GLY 73 613 613 GLY GLY B . n B 1 74 SER 74 614 614 SER SER B . n B 1 75 LEU 75 615 615 LEU LEU B . n B 1 76 ASN 76 616 616 ASN ASN B . n B 1 77 SER 77 617 617 SER SER B . n B 1 78 PHE 78 618 618 PHE PHE B . n B 1 79 GLY 79 619 619 GLY GLY B . n B 1 80 ASN 80 620 620 ASN ASN B . n B 1 81 MSE 81 621 621 MSE MSE B . n B 1 82 LEU 82 622 622 LEU LEU B . n B 1 83 PHE 83 623 623 PHE PHE B . n B 1 84 GLU 84 624 624 GLU GLU B . n B 1 85 GLU 85 625 625 GLU GLU B . n B 1 86 THR 86 626 626 THR THR B . n B 1 87 GLY 87 627 627 GLY GLY B . n B 1 88 ILE 88 628 628 ILE ILE B . n B 1 89 ARG 89 629 629 ARG ARG B . n B 1 90 THR 90 630 630 THR THR B . n B 1 91 LYS 91 631 631 LYS LYS B . n B 1 92 ALA 92 632 632 ALA ALA B . n B 1 93 ILE 93 633 633 ILE ILE B . n B 1 94 THR 94 634 634 THR THR B . n B 1 95 MSE 95 635 635 MSE MSE B . n B 1 96 THR 96 636 636 THR THR B . n B 1 97 SER 97 637 637 SER SER B . n B 1 98 THR 98 638 638 THR THR B . n B 1 99 MSE 99 639 639 MSE MSE B . n B 1 100 ILE 100 640 640 ILE ILE B . n B 1 101 VAL 101 641 641 VAL VAL B . n B 1 102 LEU 102 642 642 LEU LEU B . n B 1 103 GLU 103 643 643 GLU GLU B . n B 1 104 ALA 104 644 644 ALA ALA B . n B 1 105 ILE 105 645 645 ILE ILE B . n B 1 106 ARG 106 646 646 ARG ARG B . n B 1 107 MSE 107 647 647 MSE MSE B . n B 1 108 ALA 108 648 648 ALA ALA B . n B 1 109 SER 109 649 649 SER SER B . n B 1 110 VAL 110 650 650 VAL VAL B . n B 1 111 GLY 111 651 651 GLY GLY B . n B 1 112 ARG 112 652 652 ARG ARG B . n B 1 113 SER 113 653 653 SER SER B . n B 1 114 LEU 114 654 654 LEU LEU B . n B 1 115 GLU 115 655 655 GLU GLU B . n B 1 116 ASP 116 656 656 ASP ASP B . n B 1 117 ILE 117 657 657 ILE ILE B . n B 1 118 TYR 118 658 658 TYR TYR B . n B 1 119 GLN 119 659 659 GLN GLN B . n B 1 120 ASN 120 660 660 ASN ASN B . n B 1 121 ILE 121 661 661 ILE ILE B . n B 1 122 GLN 122 662 662 GLN GLN B . n B 1 123 LEU 123 663 663 LEU LEU B . n B 1 124 SER 124 664 664 SER SER B . n B 1 125 PHE 125 665 665 PHE PHE B . n B 1 126 GLU 126 666 666 GLU GLU B . n B 1 127 SER 127 667 667 SER SER B . n B 1 128 VAL 128 668 668 VAL VAL B . n B 1 129 VAL 129 669 669 VAL VAL B . n B 1 130 ARG 130 670 670 ARG ARG B . n B 1 131 GLU 131 671 671 GLU GLU B . n B 1 132 GLN 132 672 672 GLN GLN B . n B 1 133 PHE 133 673 673 PHE PHE B . n B 1 134 ARG 134 674 674 ARG ARG B . n B 1 135 SER 135 675 675 SER SER B . n B 1 136 SER 136 676 676 SER SER B . n B 1 137 LEU 137 677 677 LEU LEU B . n B 1 138 GLN 138 678 678 GLN ALA B . n B 1 139 LYS 139 679 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 701 701 EDO EDO B . D 3 HOH 1 1 1 HOH HOH A . D 3 HOH 2 2 2 HOH HOH A . D 3 HOH 3 3 3 HOH HOH A . D 3 HOH 4 4 4 HOH HOH A . D 3 HOH 5 6 6 HOH HOH A . D 3 HOH 6 8 8 HOH HOH A . D 3 HOH 7 11 11 HOH HOH A . D 3 HOH 8 13 13 HOH HOH A . D 3 HOH 9 17 17 HOH HOH A . D 3 HOH 10 19 19 HOH HOH A . D 3 HOH 11 21 21 HOH HOH A . D 3 HOH 12 24 24 HOH HOH A . D 3 HOH 13 25 25 HOH HOH A . D 3 HOH 14 26 26 HOH HOH A . D 3 HOH 15 27 27 HOH HOH A . D 3 HOH 16 28 28 HOH HOH A . D 3 HOH 17 29 29 HOH HOH A . D 3 HOH 18 30 30 HOH HOH A . D 3 HOH 19 32 32 HOH HOH A . D 3 HOH 20 33 33 HOH HOH A . D 3 HOH 21 34 34 HOH HOH A . D 3 HOH 22 36 36 HOH HOH A . D 3 HOH 23 37 37 HOH HOH A . D 3 HOH 24 40 40 HOH HOH A . D 3 HOH 25 44 44 HOH HOH A . D 3 HOH 26 45 45 HOH HOH A . D 3 HOH 27 46 46 HOH HOH A . D 3 HOH 28 47 47 HOH HOH A . D 3 HOH 29 48 48 HOH HOH A . D 3 HOH 30 51 51 HOH HOH A . D 3 HOH 31 60 60 HOH HOH A . D 3 HOH 32 61 61 HOH HOH A . D 3 HOH 33 62 62 HOH HOH A . D 3 HOH 34 63 63 HOH HOH A . D 3 HOH 35 64 64 HOH HOH A . D 3 HOH 36 65 65 HOH HOH A . D 3 HOH 37 66 66 HOH HOH A . D 3 HOH 38 67 67 HOH HOH A . D 3 HOH 39 68 68 HOH HOH A . D 3 HOH 40 69 69 HOH HOH A . D 3 HOH 41 70 70 HOH HOH A . D 3 HOH 42 71 71 HOH HOH A . D 3 HOH 43 74 74 HOH HOH A . D 3 HOH 44 77 77 HOH HOH A . D 3 HOH 45 78 78 HOH HOH A . D 3 HOH 46 79 79 HOH HOH A . D 3 HOH 47 82 82 HOH HOH A . D 3 HOH 48 83 83 HOH HOH A . D 3 HOH 49 84 84 HOH HOH A . D 3 HOH 50 86 86 HOH HOH A . D 3 HOH 51 87 87 HOH HOH A . D 3 HOH 52 88 88 HOH HOH A . D 3 HOH 53 89 89 HOH HOH A . D 3 HOH 54 90 90 HOH HOH A . D 3 HOH 55 92 92 HOH HOH A . D 3 HOH 56 94 94 HOH HOH A . D 3 HOH 57 95 95 HOH HOH A . D 3 HOH 58 101 101 HOH HOH A . D 3 HOH 59 105 105 HOH HOH A . D 3 HOH 60 106 106 HOH HOH A . D 3 HOH 61 107 107 HOH HOH A . D 3 HOH 62 109 109 HOH HOH A . D 3 HOH 63 111 111 HOH HOH A . D 3 HOH 64 116 116 HOH HOH A . D 3 HOH 65 119 119 HOH HOH A . D 3 HOH 66 122 122 HOH HOH A . D 3 HOH 67 126 126 HOH HOH A . D 3 HOH 68 133 133 HOH HOH A . D 3 HOH 69 134 134 HOH HOH A . D 3 HOH 70 136 136 HOH HOH A . D 3 HOH 71 138 138 HOH HOH A . D 3 HOH 72 139 139 HOH HOH A . D 3 HOH 73 140 140 HOH HOH A . D 3 HOH 74 141 141 HOH HOH A . D 3 HOH 75 142 142 HOH HOH A . D 3 HOH 76 143 143 HOH HOH A . D 3 HOH 77 145 145 HOH HOH A . D 3 HOH 78 146 146 HOH HOH A . D 3 HOH 79 148 148 HOH HOH A . D 3 HOH 80 149 149 HOH HOH A . D 3 HOH 81 150 150 HOH HOH A . D 3 HOH 82 151 151 HOH HOH A . D 3 HOH 83 152 152 HOH HOH A . D 3 HOH 84 154 154 HOH HOH A . D 3 HOH 85 157 157 HOH HOH A . D 3 HOH 86 158 158 HOH HOH A . D 3 HOH 87 159 159 HOH HOH A . D 3 HOH 88 160 160 HOH HOH A . D 3 HOH 89 162 162 HOH HOH A . D 3 HOH 90 163 163 HOH HOH A . D 3 HOH 91 166 166 HOH HOH A . D 3 HOH 92 168 168 HOH HOH A . D 3 HOH 93 170 170 HOH HOH A . D 3 HOH 94 171 171 HOH HOH A . D 3 HOH 95 174 174 HOH HOH A . D 3 HOH 96 175 175 HOH HOH A . D 3 HOH 97 176 176 HOH HOH A . D 3 HOH 98 177 177 HOH HOH A . D 3 HOH 99 178 178 HOH HOH A . D 3 HOH 100 179 179 HOH HOH A . D 3 HOH 101 181 181 HOH HOH A . D 3 HOH 102 183 183 HOH HOH A . D 3 HOH 103 185 185 HOH HOH A . D 3 HOH 104 186 186 HOH HOH A . D 3 HOH 105 187 187 HOH HOH A . D 3 HOH 106 189 189 HOH HOH A . D 3 HOH 107 190 190 HOH HOH A . D 3 HOH 108 191 191 HOH HOH A . D 3 HOH 109 193 193 HOH HOH A . D 3 HOH 110 195 195 HOH HOH A . D 3 HOH 111 197 197 HOH HOH A . D 3 HOH 112 198 198 HOH HOH A . E 3 HOH 1 5 5 HOH HOH B . E 3 HOH 2 7 7 HOH HOH B . E 3 HOH 3 9 9 HOH HOH B . E 3 HOH 4 10 10 HOH HOH B . E 3 HOH 5 12 12 HOH HOH B . E 3 HOH 6 14 14 HOH HOH B . E 3 HOH 7 15 15 HOH HOH B . E 3 HOH 8 16 16 HOH HOH B . E 3 HOH 9 18 18 HOH HOH B . E 3 HOH 10 20 20 HOH HOH B . E 3 HOH 11 22 22 HOH HOH B . E 3 HOH 12 23 23 HOH HOH B . E 3 HOH 13 31 31 HOH HOH B . E 3 HOH 14 35 35 HOH HOH B . E 3 HOH 15 38 38 HOH HOH B . E 3 HOH 16 39 39 HOH HOH B . E 3 HOH 17 41 41 HOH HOH B . E 3 HOH 18 42 42 HOH HOH B . E 3 HOH 19 43 43 HOH HOH B . E 3 HOH 20 49 49 HOH HOH B . E 3 HOH 21 50 50 HOH HOH B . E 3 HOH 22 52 52 HOH HOH B . E 3 HOH 23 53 53 HOH HOH B . E 3 HOH 24 54 54 HOH HOH B . E 3 HOH 25 55 55 HOH HOH B . E 3 HOH 26 56 56 HOH HOH B . E 3 HOH 27 57 57 HOH HOH B . E 3 HOH 28 58 58 HOH HOH B . E 3 HOH 29 59 59 HOH HOH B . E 3 HOH 30 72 72 HOH HOH B . E 3 HOH 31 73 73 HOH HOH B . E 3 HOH 32 75 75 HOH HOH B . E 3 HOH 33 76 76 HOH HOH B . E 3 HOH 34 80 80 HOH HOH B . E 3 HOH 35 81 81 HOH HOH B . E 3 HOH 36 85 85 HOH HOH B . E 3 HOH 37 91 91 HOH HOH B . E 3 HOH 38 93 93 HOH HOH B . E 3 HOH 39 96 96 HOH HOH B . E 3 HOH 40 97 97 HOH HOH B . E 3 HOH 41 98 98 HOH HOH B . E 3 HOH 42 99 99 HOH HOH B . E 3 HOH 43 100 100 HOH HOH B . E 3 HOH 44 102 102 HOH HOH B . E 3 HOH 45 103 103 HOH HOH B . E 3 HOH 46 104 104 HOH HOH B . E 3 HOH 47 108 108 HOH HOH B . E 3 HOH 48 110 110 HOH HOH B . E 3 HOH 49 112 112 HOH HOH B . E 3 HOH 50 113 113 HOH HOH B . E 3 HOH 51 114 114 HOH HOH B . E 3 HOH 52 115 115 HOH HOH B . E 3 HOH 53 117 117 HOH HOH B . E 3 HOH 54 118 118 HOH HOH B . E 3 HOH 55 120 120 HOH HOH B . E 3 HOH 56 121 121 HOH HOH B . E 3 HOH 57 123 123 HOH HOH B . E 3 HOH 58 124 124 HOH HOH B . E 3 HOH 59 125 125 HOH HOH B . E 3 HOH 60 127 127 HOH HOH B . E 3 HOH 61 128 128 HOH HOH B . E 3 HOH 62 129 129 HOH HOH B . E 3 HOH 63 130 130 HOH HOH B . E 3 HOH 64 131 131 HOH HOH B . E 3 HOH 65 132 132 HOH HOH B . E 3 HOH 66 135 135 HOH HOH B . E 3 HOH 67 137 137 HOH HOH B . E 3 HOH 68 144 144 HOH HOH B . E 3 HOH 69 147 147 HOH HOH B . E 3 HOH 70 153 153 HOH HOH B . E 3 HOH 71 155 155 HOH HOH B . E 3 HOH 72 156 156 HOH HOH B . E 3 HOH 73 161 161 HOH HOH B . E 3 HOH 74 164 164 HOH HOH B . E 3 HOH 75 165 165 HOH HOH B . E 3 HOH 76 167 167 HOH HOH B . E 3 HOH 77 169 169 HOH HOH B . E 3 HOH 78 172 172 HOH HOH B . E 3 HOH 79 173 173 HOH HOH B . E 3 HOH 80 180 180 HOH HOH B . E 3 HOH 81 182 182 HOH HOH B . E 3 HOH 82 184 184 HOH HOH B . E 3 HOH 83 188 188 HOH HOH B . E 3 HOH 84 192 192 HOH HOH B . E 3 HOH 85 194 194 HOH HOH B . E 3 HOH 86 196 196 HOH HOH B . E 3 HOH 87 199 199 HOH HOH B . E 3 HOH 88 200 200 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 551 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 560 ? MET SELENOMETHIONINE 3 A MSE 36 A MSE 576 ? MET SELENOMETHIONINE 4 A MSE 38 A MSE 578 ? MET SELENOMETHIONINE 5 A MSE 42 A MSE 582 ? MET SELENOMETHIONINE 6 A MSE 47 A MSE 587 ? MET SELENOMETHIONINE 7 A MSE 72 A MSE 612 ? MET SELENOMETHIONINE 8 A MSE 81 A MSE 621 ? MET SELENOMETHIONINE 9 A MSE 95 A MSE 635 ? MET SELENOMETHIONINE 10 A MSE 99 A MSE 639 ? MET SELENOMETHIONINE 11 A MSE 107 A MSE 647 ? MET SELENOMETHIONINE 12 B MSE 11 B MSE 551 ? MET SELENOMETHIONINE 13 B MSE 20 B MSE 560 ? MET SELENOMETHIONINE 14 B MSE 36 B MSE 576 ? MET SELENOMETHIONINE 15 B MSE 38 B MSE 578 ? MET SELENOMETHIONINE 16 B MSE 42 B MSE 582 ? MET SELENOMETHIONINE 17 B MSE 47 B MSE 587 ? MET SELENOMETHIONINE 18 B MSE 72 B MSE 612 ? MET SELENOMETHIONINE 19 B MSE 81 B MSE 621 ? MET SELENOMETHIONINE 20 B MSE 95 B MSE 635 ? MET SELENOMETHIONINE 21 B MSE 99 B MSE 639 ? MET SELENOMETHIONINE 22 B MSE 107 B MSE 647 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2910 ? 1 MORE -25.7 ? 1 'SSA (A^2)' 12120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 22.0316 23.0456 19.4271 0.0295 0.0779 0.0111 -0.0118 0.0004 -0.0204 1.5928 3.1207 1.1298 -0.7552 -0.3271 0.4852 -0.0812 -0.0838 -0.0347 -0.1035 0.0034 0.0801 0.0145 -0.0602 0.0778 'X-RAY DIFFRACTION' 2 ? refined 25.8552 27.5112 9.9470 0.0918 0.0943 0.0137 -0.0106 0.0113 0.0101 3.3677 7.9540 2.8780 -1.9299 -0.5587 0.4489 0.1961 0.2230 0.1639 -0.7998 -0.0689 -0.1295 -0.0889 -0.0635 -0.1271 'X-RAY DIFFRACTION' 3 ? refined 39.5253 19.6488 13.4933 0.0972 0.2275 0.2575 -0.0253 0.0553 -0.0480 0.3536 3.6167 3.0853 0.1201 -0.0922 2.1723 -0.0917 -0.1464 0.0700 -0.2081 0.2758 -0.7365 -0.0102 0.4364 -0.1841 'X-RAY DIFFRACTION' 4 ? refined 28.0231 -3.1530 16.0898 0.0566 0.0606 0.0991 -0.0053 0.0044 0.0550 1.4556 1.3283 2.1500 -0.9941 -0.1926 -0.3863 -0.0597 -0.1558 -0.2061 -0.0813 0.0697 0.0281 0.2330 0.0894 -0.0100 'X-RAY DIFFRACTION' 5 ? refined 37.8898 -3.4324 11.5663 0.0403 0.1475 0.1418 0.0474 0.0546 0.0166 1.8501 8.1511 4.3281 -2.0963 0.1425 0.7492 0.0158 -0.1504 -0.0364 -0.2114 0.0252 -0.4358 0.2522 0.4713 -0.0411 'X-RAY DIFFRACTION' 6 ? refined 31.8895 7.8532 0.7237 0.3656 0.1422 0.1528 -0.0283 0.0816 -0.0800 0.1789 1.7050 1.1575 0.3155 -0.2351 -1.3334 -0.0037 0.1199 -0.0787 -0.4032 0.1424 0.0549 0.1567 -0.0633 -0.1387 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 541 ? ? A 602 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 603 ? ? A 636 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 637 ? ? A 675 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 541 ? ? B 602 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 603 ? ? B 636 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 637 ? ? B 675 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 SHELXD phasing . ? 5 RESOLVE 'model building' . ? 6 ARP/wARP 'model building' . ? 7 Coot 'model building' . ? 8 REFMAC refinement 5.5.0054 ? 9 HKL-3000 'data reduction' . ? 10 HKL-3000 'data scaling' . ? 11 DM phasing . ? 12 RESOLVE phasing . ? 13 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 97 ? ? O B HOH 182 ? ? 2.10 2 1 O B HOH 53 ? ? O B HOH 173 ? ? 2.11 3 1 O B GLY 573 ? ? O B HOH 53 ? ? 2.15 4 1 O B HOH 53 ? ? O B HOH 58 ? ? 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 670 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 670 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 670 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.18 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.12 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 555 ? ? -150.33 20.22 2 1 GLN A 598 ? ? -144.24 40.84 3 1 SER B 555 ? ? -152.71 15.72 4 1 ASP B 611 ? ? -98.54 -60.64 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 541 ? OG ? A SER 1 OG 2 1 Y 1 A SER 675 ? OG ? A SER 135 OG 3 1 Y 1 B SER 541 ? OG ? B SER 1 OG 4 1 Y 1 B GLN 678 ? CG ? B GLN 138 CG 5 1 Y 1 B GLN 678 ? CD ? B GLN 138 CD 6 1 Y 1 B GLN 678 ? OE1 ? B GLN 138 OE1 7 1 Y 1 B GLN 678 ? NE2 ? B GLN 138 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 676 ? A SER 136 2 1 Y 1 A LEU 677 ? A LEU 137 3 1 Y 1 A GLN 678 ? A GLN 138 4 1 Y 1 A LYS 679 ? A LYS 139 5 1 Y 1 B LYS 679 ? B LYS 139 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #