HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-09 3GDW TITLE CRYSTAL STRUCTURE OF SIGMA-54 INTERACTION DOMAIN PROTEIN FROM TITLE 2 ENTEROCOCCUS FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGMA-54 INTERACTION DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 544-679; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 ATCC: 700802; SOURCE 6 GENE: EF_1010; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ENTEROCOCCUS FAECALIS, SIGMA-54 INTERACTION DOMAIN PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, ATP-BINDING, NUCLEOTIDE- KEYWDS 4 BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,A.SATHER,K.BUCK,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 01-NOV-17 3GDW 1 REMARK REVDAT 2 13-JUL-11 3GDW 1 VERSN REVDAT 1 10-MAR-09 3GDW 0 JRNL AUTH C.CHANG,A.SATHER,K.BUCK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF SIGMA-54 INTERACTION DOMAIN PROTEIN JRNL TITL 2 FROM ENTEROCOCCUS FAECALIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.97000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2230 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3018 ; 1.329 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 4.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.412 ;25.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;14.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1639 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 0.724 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ; 1.357 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 806 ; 2.701 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 702 ; 4.315 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 541 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0316 23.0456 19.4271 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0779 REMARK 3 T33: 0.0111 T12: -0.0118 REMARK 3 T13: 0.0004 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.5928 L22: 3.1207 REMARK 3 L33: 1.1298 L12: -0.7552 REMARK 3 L13: -0.3271 L23: 0.4852 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.0838 S13: -0.0347 REMARK 3 S21: -0.1035 S22: 0.0034 S23: 0.0801 REMARK 3 S31: 0.0145 S32: -0.0602 S33: 0.0778 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 603 A 636 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8552 27.5112 9.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0943 REMARK 3 T33: 0.0137 T12: -0.0106 REMARK 3 T13: 0.0113 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.3677 L22: 7.9540 REMARK 3 L33: 2.8780 L12: -1.9299 REMARK 3 L13: -0.5587 L23: 0.4489 REMARK 3 S TENSOR REMARK 3 S11: 0.1961 S12: 0.2230 S13: 0.1639 REMARK 3 S21: -0.7998 S22: -0.0689 S23: -0.1295 REMARK 3 S31: -0.0889 S32: -0.0635 S33: -0.1271 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 637 A 675 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5253 19.6488 13.4933 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.2275 REMARK 3 T33: 0.2575 T12: -0.0253 REMARK 3 T13: 0.0553 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 0.3536 L22: 3.6167 REMARK 3 L33: 3.0853 L12: 0.1201 REMARK 3 L13: -0.0922 L23: 2.1723 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: -0.1464 S13: 0.0700 REMARK 3 S21: -0.2081 S22: 0.2758 S23: -0.7365 REMARK 3 S31: -0.0102 S32: 0.4364 S33: -0.1841 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 541 B 602 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0231 -3.1530 16.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0606 REMARK 3 T33: 0.0991 T12: -0.0053 REMARK 3 T13: 0.0044 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.4556 L22: 1.3283 REMARK 3 L33: 2.1500 L12: -0.9941 REMARK 3 L13: -0.1926 L23: -0.3863 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.1558 S13: -0.2061 REMARK 3 S21: -0.0813 S22: 0.0697 S23: 0.0281 REMARK 3 S31: 0.2330 S32: 0.0894 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 603 B 636 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8898 -3.4324 11.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.1475 REMARK 3 T33: 0.1418 T12: 0.0474 REMARK 3 T13: 0.0546 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.8501 L22: 8.1511 REMARK 3 L33: 4.3281 L12: -2.0963 REMARK 3 L13: 0.1425 L23: 0.7492 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.1504 S13: -0.0364 REMARK 3 S21: -0.2114 S22: 0.0252 S23: -0.4358 REMARK 3 S31: 0.2522 S32: 0.4713 S33: -0.0411 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 637 B 675 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8895 7.8532 0.7237 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.1422 REMARK 3 T33: 0.1528 T12: -0.0283 REMARK 3 T13: 0.0816 T23: -0.0800 REMARK 3 L TENSOR REMARK 3 L11: 0.1789 L22: 1.7050 REMARK 3 L33: 1.1575 L12: 0.3155 REMARK 3 L13: -0.2351 L23: -1.3334 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.1199 S13: -0.0787 REMARK 3 S21: -0.4032 S22: 0.1424 S23: 0.0549 REMARK 3 S31: 0.1567 S32: -0.0633 S33: -0.1387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20315 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 65.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE, 20% PEG 3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.56350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.25100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.70900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.25100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.56350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.70900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 676 REMARK 465 LEU A 677 REMARK 465 GLN A 678 REMARK 465 LYS A 679 REMARK 465 LYS B 679 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 541 OG REMARK 470 SER A 675 OG REMARK 470 SER B 541 OG REMARK 470 GLN B 678 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 97 O HOH B 182 2.10 REMARK 500 O HOH B 53 O HOH B 173 2.11 REMARK 500 O GLY B 573 O HOH B 53 2.15 REMARK 500 O HOH B 53 O HOH B 58 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 670 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 555 20.22 -150.33 REMARK 500 GLN A 598 40.84 -144.24 REMARK 500 SER B 555 15.72 -152.71 REMARK 500 ASP B 611 -60.64 -98.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62877.1 RELATED DB: TARGETDB DBREF 3GDW A 544 679 UNP Q836U6 Q836U6_ENTFA 544 679 DBREF 3GDW B 544 679 UNP Q836U6 Q836U6_ENTFA 544 679 SEQADV 3GDW SER A 541 UNP Q836U6 EXPRESSION TAG SEQADV 3GDW ASN A 542 UNP Q836U6 EXPRESSION TAG SEQADV 3GDW ALA A 543 UNP Q836U6 EXPRESSION TAG SEQADV 3GDW SER B 541 UNP Q836U6 EXPRESSION TAG SEQADV 3GDW ASN B 542 UNP Q836U6 EXPRESSION TAG SEQADV 3GDW ALA B 543 UNP Q836U6 EXPRESSION TAG SEQRES 1 A 139 SER ASN ALA ASN VAL GLY VAL PHE VAL LEU MSE HIS GLY SEQRES 2 A 139 ASP SER THR ALA SER SER MSE LEU LYS THR ALA GLN GLU SEQRES 3 A 139 LEU LEU GLY THR SER ILE GLY THR ALA MSE ASN MSE PRO SEQRES 4 A 139 LEU THR MSE GLU VAL GLN THR MSE TYR GLU GLN LEU ARG SEQRES 5 A 139 ASN GLN VAL ILE THR GLN LYS GLU SER LEU ASN ASN GLY SEQRES 6 A 139 ILE LEU LEU LEU THR ASP MSE GLY SER LEU ASN SER PHE SEQRES 7 A 139 GLY ASN MSE LEU PHE GLU GLU THR GLY ILE ARG THR LYS SEQRES 8 A 139 ALA ILE THR MSE THR SER THR MSE ILE VAL LEU GLU ALA SEQRES 9 A 139 ILE ARG MSE ALA SER VAL GLY ARG SER LEU GLU ASP ILE SEQRES 10 A 139 TYR GLN ASN ILE GLN LEU SER PHE GLU SER VAL VAL ARG SEQRES 11 A 139 GLU GLN PHE ARG SER SER LEU GLN LYS SEQRES 1 B 139 SER ASN ALA ASN VAL GLY VAL PHE VAL LEU MSE HIS GLY SEQRES 2 B 139 ASP SER THR ALA SER SER MSE LEU LYS THR ALA GLN GLU SEQRES 3 B 139 LEU LEU GLY THR SER ILE GLY THR ALA MSE ASN MSE PRO SEQRES 4 B 139 LEU THR MSE GLU VAL GLN THR MSE TYR GLU GLN LEU ARG SEQRES 5 B 139 ASN GLN VAL ILE THR GLN LYS GLU SER LEU ASN ASN GLY SEQRES 6 B 139 ILE LEU LEU LEU THR ASP MSE GLY SER LEU ASN SER PHE SEQRES 7 B 139 GLY ASN MSE LEU PHE GLU GLU THR GLY ILE ARG THR LYS SEQRES 8 B 139 ALA ILE THR MSE THR SER THR MSE ILE VAL LEU GLU ALA SEQRES 9 B 139 ILE ARG MSE ALA SER VAL GLY ARG SER LEU GLU ASP ILE SEQRES 10 B 139 TYR GLN ASN ILE GLN LEU SER PHE GLU SER VAL VAL ARG SEQRES 11 B 139 GLU GLN PHE ARG SER SER LEU GLN LYS MODRES 3GDW MSE A 551 MET SELENOMETHIONINE MODRES 3GDW MSE A 560 MET SELENOMETHIONINE MODRES 3GDW MSE A 576 MET SELENOMETHIONINE MODRES 3GDW MSE A 578 MET SELENOMETHIONINE MODRES 3GDW MSE A 582 MET SELENOMETHIONINE MODRES 3GDW MSE A 587 MET SELENOMETHIONINE MODRES 3GDW MSE A 612 MET SELENOMETHIONINE MODRES 3GDW MSE A 621 MET SELENOMETHIONINE MODRES 3GDW MSE A 635 MET SELENOMETHIONINE MODRES 3GDW MSE A 639 MET SELENOMETHIONINE MODRES 3GDW MSE A 647 MET SELENOMETHIONINE MODRES 3GDW MSE B 551 MET SELENOMETHIONINE MODRES 3GDW MSE B 560 MET SELENOMETHIONINE MODRES 3GDW MSE B 576 MET SELENOMETHIONINE MODRES 3GDW MSE B 578 MET SELENOMETHIONINE MODRES 3GDW MSE B 582 MET SELENOMETHIONINE MODRES 3GDW MSE B 587 MET SELENOMETHIONINE MODRES 3GDW MSE B 612 MET SELENOMETHIONINE MODRES 3GDW MSE B 621 MET SELENOMETHIONINE MODRES 3GDW MSE B 635 MET SELENOMETHIONINE MODRES 3GDW MSE B 639 MET SELENOMETHIONINE MODRES 3GDW MSE B 647 MET SELENOMETHIONINE HET MSE A 551 8 HET MSE A 560 8 HET MSE A 576 8 HET MSE A 578 8 HET MSE A 582 8 HET MSE A 587 8 HET MSE A 612 8 HET MSE A 621 8 HET MSE A 635 8 HET MSE A 639 24 HET MSE A 647 8 HET MSE B 551 8 HET MSE B 560 8 HET MSE B 576 8 HET MSE B 578 8 HET MSE B 582 8 HET MSE B 587 8 HET MSE B 612 8 HET MSE B 621 8 HET MSE B 635 8 HET MSE B 639 8 HET MSE B 647 8 HET EDO B 701 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *200(H2 O) HELIX 1 1 SER A 555 GLY A 569 1 15 HELIX 2 2 GLU A 583 THR A 597 1 15 HELIX 3 3 GLN A 598 ASN A 603 5 6 HELIX 4 4 MSE A 612 ASN A 616 5 5 HELIX 5 5 SER A 617 GLY A 627 1 11 HELIX 6 6 SER A 637 VAL A 650 1 14 HELIX 7 7 SER A 653 PHE A 673 1 21 HELIX 8 8 SER B 555 GLY B 569 1 15 HELIX 9 9 GLU B 583 GLN B 598 1 16 HELIX 10 10 LYS B 599 LEU B 602 5 4 HELIX 11 11 MSE B 612 ASN B 616 5 5 HELIX 12 12 SER B 617 GLY B 627 1 11 HELIX 13 13 SER B 637 VAL B 650 1 14 HELIX 14 14 SER B 653 SER B 676 1 24 SHEET 1 A 4 THR A 574 MSE A 578 0 SHEET 2 A 4 GLY A 546 HIS A 552 1 N MSE A 551 O MSE A 578 SHEET 3 A 4 ILE A 606 THR A 610 1 O LEU A 609 N LEU A 550 SHEET 4 A 4 THR A 630 ILE A 633 1 O LYS A 631 N LEU A 608 SHEET 1 B 4 THR B 574 MSE B 578 0 SHEET 2 B 4 GLY B 546 HIS B 552 1 N VAL B 549 O THR B 574 SHEET 3 B 4 ILE B 606 THR B 610 1 O LEU B 607 N GLY B 546 SHEET 4 B 4 THR B 630 ILE B 633 1 O ILE B 633 N THR B 610 LINK C LEU A 550 N MSE A 551 1555 1555 1.34 LINK C MSE A 551 N HIS A 552 1555 1555 1.33 LINK C SER A 559 N MSE A 560 1555 1555 1.34 LINK C MSE A 560 N LEU A 561 1555 1555 1.33 LINK C ALA A 575 N MSE A 576 1555 1555 1.32 LINK C MSE A 576 N ASN A 577 1555 1555 1.33 LINK C ASN A 577 N MSE A 578 1555 1555 1.33 LINK C MSE A 578 N PRO A 579 1555 1555 1.34 LINK C THR A 581 N MSE A 582 1555 1555 1.33 LINK C MSE A 582 N GLU A 583 1555 1555 1.33 LINK C THR A 586 N MSE A 587 1555 1555 1.34 LINK C MSE A 587 N TYR A 588 1555 1555 1.35 LINK C ASP A 611 N MSE A 612 1555 1555 1.32 LINK C MSE A 612 N GLY A 613 1555 1555 1.32 LINK C ASN A 620 N MSE A 621 1555 1555 1.33 LINK C MSE A 621 N LEU A 622 1555 1555 1.33 LINK C ATHR A 634 N MSE A 635 1555 1555 1.33 LINK C BTHR A 634 N MSE A 635 1555 1555 1.33 LINK C MSE A 635 N THR A 636 1555 1555 1.32 LINK C THR A 638 N AMSE A 639 1555 1555 1.33 LINK C THR A 638 N BMSE A 639 1555 1555 1.33 LINK C THR A 638 N CMSE A 639 1555 1555 1.33 LINK C AMSE A 639 N ILE A 640 1555 1555 1.34 LINK C BMSE A 639 N ILE A 640 1555 1555 1.33 LINK C CMSE A 639 N ILE A 640 1555 1555 1.34 LINK C AARG A 646 N MSE A 647 1555 1555 1.33 LINK C BARG A 646 N MSE A 647 1555 1555 1.33 LINK C MSE A 647 N ALA A 648 1555 1555 1.33 LINK C LEU B 550 N MSE B 551 1555 1555 1.34 LINK C MSE B 551 N HIS B 552 1555 1555 1.33 LINK C SER B 559 N MSE B 560 1555 1555 1.33 LINK C MSE B 560 N LEU B 561 1555 1555 1.34 LINK C ALA B 575 N MSE B 576 1555 1555 1.34 LINK C MSE B 576 N ASN B 577 1555 1555 1.33 LINK C ASN B 577 N MSE B 578 1555 1555 1.33 LINK C MSE B 578 N PRO B 579 1555 1555 1.35 LINK C THR B 581 N MSE B 582 1555 1555 1.34 LINK C MSE B 582 N GLU B 583 1555 1555 1.33 LINK C THR B 586 N MSE B 587 1555 1555 1.33 LINK C MSE B 587 N TYR B 588 1555 1555 1.32 LINK C ASP B 611 N MSE B 612 1555 1555 1.33 LINK C MSE B 612 N GLY B 613 1555 1555 1.34 LINK C ASN B 620 N MSE B 621 1555 1555 1.34 LINK C MSE B 621 N LEU B 622 1555 1555 1.33 LINK C ATHR B 634 N MSE B 635 1555 1555 1.34 LINK C BTHR B 634 N MSE B 635 1555 1555 1.34 LINK C MSE B 635 N THR B 636 1555 1555 1.33 LINK C THR B 638 N MSE B 639 1555 1555 1.33 LINK C MSE B 639 N ILE B 640 1555 1555 1.33 LINK C ARG B 646 N MSE B 647 1555 1555 1.33 LINK C MSE B 647 N ALA B 648 1555 1555 1.34 CRYST1 43.127 71.418 94.502 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023187 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010582 0.00000