data_3GDX # _entry.id 3GDX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GDX pdb_00003gdx 10.2210/pdb3gdx/pdb NDB PD1257 ? ? RCSB RCSB051739 ? ? WWPDB D_1000051739 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2FMS _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GDX _pdbx_database_status.recvd_initial_deposition_date 2009-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wilson, S.H.' 1 'Batra, V.K.' 2 'Pedersen, L.C.' 3 # _citation.id primary _citation.title ;Alpha,beta-difluoromethylene deoxynucleoside 5'-triphosphates: a convenient synthesis of useful probes for DNA polymerase beta structure and function ; _citation.journal_abbrev Org.Lett. _citation.journal_volume 11 _citation.page_first 1883 _citation.page_last 1886 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1523-7060 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19351147 _citation.pdbx_database_id_DOI 10.1021/ol701755k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Upton, T.G.' 1 ? primary 'Kashemirov, B.A.' 2 ? primary 'McKenna, C.E.' 3 ? primary 'Goodman, M.F.' 4 ? primary 'Prakash, G.K.' 5 ? primary 'Kultyshev, R.' 6 ? primary 'Batra, V.K.' 7 ? primary 'Shock, D.D.' 8 ? primary 'Pedersen, L.C.' 9 ? primary 'Beard, W.A.' 10 ? primary 'Wilson, S.H.' 11 ? # _cell.entry_id 3GDX _cell.length_a 50.500 _cell.length_b 79.700 _cell.length_c 55.300 _cell.angle_alpha 90.00 _cell.angle_beta 107.90 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GDX _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase beta' 37182.410 1 '2.7.7.7, 4.2.99.-' ? ? ? 2 polymer syn "5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'" 4853.158 1 ? ? ? ? 3 polymer syn "5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'" 3061.004 1 ? ? ? ? 4 polymer syn "5'-D(P*GP*TP*CP*GP*G)-3'" 1536.035 1 ? ? ? ? 5 non-polymer syn "5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]thymidine" 516.176 1 ? ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 7 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 8 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 9 water nat water 18.015 277 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIR QDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKV DSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE YPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYRE PKDRSE ; ;TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIR QDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKV DSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE YPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYRE PKDRSE ; A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACAGCGCATCAGC T ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DC)' GCTGATGCGC P ? 4 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 ASN n 1 4 GLY n 1 5 GLY n 1 6 ILE n 1 7 THR n 1 8 ASP n 1 9 MET n 1 10 LEU n 1 11 THR n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 ASN n 1 16 PHE n 1 17 GLU n 1 18 LYS n 1 19 ASN n 1 20 VAL n 1 21 SER n 1 22 GLN n 1 23 ALA n 1 24 ILE n 1 25 HIS n 1 26 LYS n 1 27 TYR n 1 28 ASN n 1 29 ALA n 1 30 TYR n 1 31 ARG n 1 32 LYS n 1 33 ALA n 1 34 ALA n 1 35 SER n 1 36 VAL n 1 37 ILE n 1 38 ALA n 1 39 LYS n 1 40 TYR n 1 41 PRO n 1 42 HIS n 1 43 LYS n 1 44 ILE n 1 45 LYS n 1 46 SER n 1 47 GLY n 1 48 ALA n 1 49 GLU n 1 50 ALA n 1 51 LYS n 1 52 LYS n 1 53 LEU n 1 54 PRO n 1 55 GLY n 1 56 VAL n 1 57 GLY n 1 58 THR n 1 59 LYS n 1 60 ILE n 1 61 ALA n 1 62 GLU n 1 63 LYS n 1 64 ILE n 1 65 ASP n 1 66 GLU n 1 67 PHE n 1 68 LEU n 1 69 ALA n 1 70 THR n 1 71 GLY n 1 72 LYS n 1 73 LEU n 1 74 ARG n 1 75 LYS n 1 76 LEU n 1 77 GLU n 1 78 LYS n 1 79 ILE n 1 80 ARG n 1 81 GLN n 1 82 ASP n 1 83 ASP n 1 84 THR n 1 85 SER n 1 86 SER n 1 87 SER n 1 88 ILE n 1 89 ASN n 1 90 PHE n 1 91 LEU n 1 92 THR n 1 93 ARG n 1 94 VAL n 1 95 SER n 1 96 GLY n 1 97 ILE n 1 98 GLY n 1 99 PRO n 1 100 SER n 1 101 ALA n 1 102 ALA n 1 103 ARG n 1 104 LYS n 1 105 PHE n 1 106 VAL n 1 107 ASP n 1 108 GLU n 1 109 GLY n 1 110 ILE n 1 111 LYS n 1 112 THR n 1 113 LEU n 1 114 GLU n 1 115 ASP n 1 116 LEU n 1 117 ARG n 1 118 LYS n 1 119 ASN n 1 120 GLU n 1 121 ASP n 1 122 LYS n 1 123 LEU n 1 124 ASN n 1 125 HIS n 1 126 HIS n 1 127 GLN n 1 128 ARG n 1 129 ILE n 1 130 GLY n 1 131 LEU n 1 132 LYS n 1 133 TYR n 1 134 PHE n 1 135 GLY n 1 136 ASP n 1 137 PHE n 1 138 GLU n 1 139 LYS n 1 140 ARG n 1 141 ILE n 1 142 PRO n 1 143 ARG n 1 144 GLU n 1 145 GLU n 1 146 MET n 1 147 LEU n 1 148 GLN n 1 149 MET n 1 150 GLN n 1 151 ASP n 1 152 ILE n 1 153 VAL n 1 154 LEU n 1 155 ASN n 1 156 GLU n 1 157 VAL n 1 158 LYS n 1 159 LYS n 1 160 VAL n 1 161 ASP n 1 162 SER n 1 163 GLU n 1 164 TYR n 1 165 ILE n 1 166 ALA n 1 167 THR n 1 168 VAL n 1 169 CYS n 1 170 GLY n 1 171 SER n 1 172 PHE n 1 173 ARG n 1 174 ARG n 1 175 GLY n 1 176 ALA n 1 177 GLU n 1 178 SER n 1 179 SER n 1 180 GLY n 1 181 ASP n 1 182 MET n 1 183 ASP n 1 184 VAL n 1 185 LEU n 1 186 LEU n 1 187 THR n 1 188 HIS n 1 189 PRO n 1 190 SER n 1 191 PHE n 1 192 THR n 1 193 SER n 1 194 GLU n 1 195 SER n 1 196 THR n 1 197 LYS n 1 198 GLN n 1 199 PRO n 1 200 LYS n 1 201 LEU n 1 202 LEU n 1 203 HIS n 1 204 GLN n 1 205 VAL n 1 206 VAL n 1 207 GLU n 1 208 GLN n 1 209 LEU n 1 210 GLN n 1 211 LYS n 1 212 VAL n 1 213 HIS n 1 214 PHE n 1 215 ILE n 1 216 THR n 1 217 ASP n 1 218 THR n 1 219 LEU n 1 220 SER n 1 221 LYS n 1 222 GLY n 1 223 GLU n 1 224 THR n 1 225 LYS n 1 226 PHE n 1 227 MET n 1 228 GLY n 1 229 VAL n 1 230 CYS n 1 231 GLN n 1 232 LEU n 1 233 PRO n 1 234 SER n 1 235 LYS n 1 236 ASN n 1 237 ASP n 1 238 GLU n 1 239 LYS n 1 240 GLU n 1 241 TYR n 1 242 PRO n 1 243 HIS n 1 244 ARG n 1 245 ARG n 1 246 ILE n 1 247 ASP n 1 248 ILE n 1 249 ARG n 1 250 LEU n 1 251 ILE n 1 252 PRO n 1 253 LYS n 1 254 ASP n 1 255 GLN n 1 256 TYR n 1 257 TYR n 1 258 CYS n 1 259 GLY n 1 260 VAL n 1 261 LEU n 1 262 TYR n 1 263 PHE n 1 264 THR n 1 265 GLY n 1 266 SER n 1 267 ASP n 1 268 ILE n 1 269 PHE n 1 270 ASN n 1 271 LYS n 1 272 ASN n 1 273 MET n 1 274 ARG n 1 275 ALA n 1 276 HIS n 1 277 ALA n 1 278 LEU n 1 279 GLU n 1 280 LYS n 1 281 GLY n 1 282 PHE n 1 283 THR n 1 284 ILE n 1 285 ASN n 1 286 GLU n 1 287 TYR n 1 288 THR n 1 289 ILE n 1 290 ARG n 1 291 PRO n 1 292 LEU n 1 293 GLY n 1 294 VAL n 1 295 THR n 1 296 GLY n 1 297 VAL n 1 298 ALA n 1 299 GLY n 1 300 GLU n 1 301 PRO n 1 302 LEU n 1 303 PRO n 1 304 VAL n 1 305 ASP n 1 306 SER n 1 307 GLU n 1 308 LYS n 1 309 ASP n 1 310 ILE n 1 311 PHE n 1 312 ASP n 1 313 TYR n 1 314 ILE n 1 315 GLN n 1 316 TRP n 1 317 LYS n 1 318 TYR n 1 319 ARG n 1 320 GLU n 1 321 PRO n 1 322 LYS n 1 323 ASP n 1 324 ARG n 1 325 SER n 1 326 GLU n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DA n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DC n 2 11 DA n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DG n 2 16 DC n 3 1 DG n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DA n 3 6 DT n 3 7 DG n 3 8 DC n 3 9 DG n 3 10 DC n 4 1 DG n 4 2 DT n 4 3 DC n 4 4 DG n 4 5 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POLB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPOLB_HUMAN P06746 1 ;TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIR QDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKV DSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE YPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYRE PKDRSE ; 10 ? 2 PDB 3GDX 3GDX 2 CCGACAGCGCATCAGC 1 ? 3 PDB 3GDX 3GDX 3 GCTGATGCGC 1 ? 4 PDB 3GDX 3GDX 4 GTCGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GDX A 1 ? 326 ? P06746 10 ? 335 ? 10 335 2 2 3GDX T 1 ? 16 ? 3GDX 1 ? 16 ? 1 16 3 3 3GDX P 1 ? 10 ? 3GDX 1 ? 10 ? 1 10 4 4 3GDX D 1 ? 5 ? 3GDX 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4BD non-polymer . "5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]thymidine" ? 'C11 H17 F2 N2 O13 P3' 516.176 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GDX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '100 mM IMIDAZOLE,pH 8.0, SODIUM ACETATE 350 mM, PEG2000 MONOMETHYL ETHER 20%, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 IMIDAZOLE ? ? ? 1 2 1 'SODIUM ACETATE' ? ? ? 1 3 1 PEG2000 ? ? ? 1 4 1 'MONOMETHYL ETHER' ? ? ? 1 5 2 'SODIUM ACETATE' ? ? ? 1 6 2 PEG2000 ? ? ? 1 7 2 'MONOMETHYL ETHER' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.pdbx_collection_date 2005-04-19 _diffrn_detector.details VIRAMAX # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3GDX _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.2 _reflns.number_obs 18597 _reflns.number_all 18597 _reflns.percent_possible_obs 86.4 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.2 _reflns.B_iso_Wilson_estimate 17.5 _reflns.pdbx_redundancy 2.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 82.2 _reflns_shell.Rmerge_I_obs 0.438 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.28 _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1757 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GDX _refine.ls_number_reflns_obs 15889 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 333638.11 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.58 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 74.9 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.266 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1559 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 29.8 _refine.aniso_B[1][1] 2.09 _refine.aniso_B[2][2] -1.14 _refine.aniso_B[3][3] -0.94 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 5.36 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.324569 _refine.solvent_model_param_bsol 34.1284 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 2FMS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GDX _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.29 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.38 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2656 _refine_hist.pdbx_number_atoms_nucleic_acid 631 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 277 _refine_hist.number_atoms_total 3601 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 20.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.01 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.34 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.14 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.92 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.89 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 2359 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 75.3 _refine_ls_shell.R_factor_R_free 0.345 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 271 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 4BD.param protein.top 'X-RAY DIFFRACTION' 2 ? dna-rna.top 'X-RAY DIFFRACTION' 3 ? water.top 'X-RAY DIFFRACTION' 4 ? dtf.top 'X-RAY DIFFRACTION' 5 ? dNTP.top 'X-RAY DIFFRACTION' # _struct.entry_id 3GDX _struct.title 'Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GDX _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text ;NUCLOETIDYL TRANSFERASE, DNA POLYMERASE, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Lyase, Magnesium, Metal-binding, Nucleotidyltransferase, Nucleus, Polymorphism, Sodium, Transferase, TRANSFERASE-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 8 ? K N N 8 ? L N N 9 ? M N N 9 ? N N N 9 ? O N N 9 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? VAL A 20 ? ASN A 12 VAL A 29 1 ? 18 HELX_P HELX_P2 2 ALA A 23 ? LYS A 39 ? ALA A 32 LYS A 48 1 ? 17 HELX_P HELX_P3 3 SER A 46 ? LYS A 52 ? SER A 55 LYS A 61 1 ? 7 HELX_P HELX_P4 4 GLY A 57 ? GLY A 71 ? GLY A 66 GLY A 80 1 ? 15 HELX_P HELX_P5 5 LEU A 73 ? ASP A 82 ? LEU A 82 ASP A 91 1 ? 10 HELX_P HELX_P6 6 ASP A 82 ? THR A 92 ? ASP A 91 THR A 101 1 ? 11 HELX_P HELX_P7 7 GLY A 98 ? ASP A 107 ? GLY A 107 ASP A 116 1 ? 10 HELX_P HELX_P8 8 THR A 112 ? ASN A 119 ? THR A 121 ASN A 128 1 ? 8 HELX_P HELX_P9 9 GLU A 120 ? LEU A 123 ? GLU A 129 LEU A 132 5 ? 4 HELX_P HELX_P10 10 ASN A 124 ? TYR A 133 ? ASN A 133 TYR A 142 1 ? 10 HELX_P HELX_P11 11 TYR A 133 ? LYS A 139 ? TYR A 142 LYS A 148 1 ? 7 HELX_P HELX_P12 12 ARG A 143 ? ASP A 161 ? ARG A 152 ASP A 170 1 ? 19 HELX_P HELX_P13 13 CYS A 169 ? ARG A 174 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P14 14 LYS A 200 ? VAL A 212 ? LYS A 209 VAL A 221 1 ? 13 HELX_P HELX_P15 15 PRO A 252 ? ASP A 254 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P16 16 GLN A 255 ? GLY A 265 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P17 17 SER A 266 ? LYS A 280 ? SER A 275 LYS A 289 1 ? 15 HELX_P HELX_P18 18 SER A 306 ? ILE A 314 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P19 19 GLU A 320 ? ARG A 324 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 1 A MG 347 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc2 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 2 A MG 348 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc3 metalc ? ? A LYS 51 O ? ? ? 1_555 I NA . NA ? ? A LYS 60 A NA 350 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc4 metalc ? ? A LEU 53 O ? ? ? 1_555 I NA . NA ? ? A LEU 62 A NA 350 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc5 metalc ? ? A VAL 56 O ? ? ? 1_555 I NA . NA ? ? A VAL 65 A NA 350 1_555 ? ? ? ? ? ? ? 2.667 ? ? metalc6 metalc ? ? A THR 92 O ? ? ? 1_555 H NA . NA ? ? A THR 101 A NA 349 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc7 metalc ? ? A VAL 94 O ? ? ? 1_555 H NA . NA ? ? A VAL 103 A NA 349 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc8 metalc ? ? A ILE 97 O ? ? ? 1_555 H NA . NA ? ? A ILE 106 A NA 349 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc9 metalc ? ? A ASP 181 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 190 A MG 347 1_555 ? ? ? ? ? ? ? 1.795 ? ? metalc10 metalc ? ? A ASP 181 OD2 ? ? ? 1_555 G MG . MG ? ? A ASP 190 A MG 348 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc11 metalc ? ? A ASP 183 OD2 ? ? ? 1_555 F MG . MG ? ? A ASP 192 A MG 347 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc12 metalc ? ? A ASP 183 OD1 ? ? ? 1_555 G MG . MG ? ? A ASP 192 A MG 348 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc13 metalc ? ? A ASP 247 OD2 ? ? ? 1_555 G MG . MG ? ? A ASP 256 A MG 348 1_555 ? ? ? ? ? ? ? 2.028 ? ? metalc14 metalc ? ? E 4BD . O1A ? ? ? 1_555 F MG . MG ? ? A 4BD 346 A MG 347 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc15 metalc ? ? E 4BD . O2B ? ? ? 1_555 F MG . MG ? ? A 4BD 346 A MG 347 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc16 metalc ? ? E 4BD . O3G ? ? ? 1_555 F MG . MG ? ? A 4BD 346 A MG 347 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc17 metalc ? ? E 4BD . O1A ? ? ? 1_555 G MG . MG ? ? A 4BD 346 A MG 348 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 C DC 10 "O3'" ? ? A MG 348 P DC 10 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc19 metalc ? ? H NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 349 A HOH 510 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc20 metalc ? ? H NA . NA ? ? ? 1_555 C DG 9 OP1 ? ? A NA 349 P DG 9 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc21 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 349 P HOH 56 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc22 metalc ? ? I NA . NA ? ? ? 1_555 D DC 3 OP1 ? ? A NA 350 D DC 3 1_555 ? ? ? ? ? ? ? 2.513 ? ? metalc23 metalc ? ? I NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 350 D HOH 55 1_555 ? ? ? ? ? ? ? 2.637 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 D DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 D DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 D DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 D DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 D DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 D DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 D DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 D DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 D DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 D DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 D DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 10 N3 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 10 O2 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 10 N4 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 16 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 16 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DC 16 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 265 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 266 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.64 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 141 ? PRO A 142 ? ILE A 150 PRO A 151 A 2 SER A 178 ? SER A 179 ? SER A 187 SER A 188 B 1 ILE A 165 ? VAL A 168 ? ILE A 174 VAL A 177 B 2 MET A 182 ? THR A 187 ? MET A 191 THR A 196 B 3 ARG A 244 ? LEU A 250 ? ARG A 253 LEU A 259 B 4 LYS A 225 ? CYS A 230 ? LYS A 234 CYS A 239 B 5 ILE A 215 ? LYS A 221 ? ILE A 224 LYS A 230 C 1 PHE A 191 ? THR A 192 ? PHE A 200 THR A 201 C 2 SER A 195 ? THR A 196 ? SER A 204 THR A 205 D 1 PHE A 282 ? ILE A 284 ? PHE A 291 ILE A 293 D 2 ILE A 289 ? PRO A 291 ? ILE A 298 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 141 ? N ILE A 150 O SER A 179 ? O SER A 188 B 1 2 N THR A 167 ? N THR A 176 O LEU A 185 ? O LEU A 194 B 2 3 O LEU A 186 ? O LEU A 195 N ARG A 249 ? N ARG A 258 B 3 4 O ARG A 244 ? O ARG A 253 N CYS A 230 ? N CYS A 239 B 4 5 O VAL A 229 ? O VAL A 238 N THR A 216 ? N THR A 225 C 1 2 N THR A 192 ? N THR A 201 O SER A 195 ? O SER A 204 D 1 2 N THR A 283 ? N THR A 292 O ARG A 290 ? O ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 4BD 346 ? 23 'BINDING SITE FOR RESIDUE 4BD A 346' AC2 Software A MG 347 ? 5 'BINDING SITE FOR RESIDUE MG A 347' AC3 Software A MG 348 ? 7 'BINDING SITE FOR RESIDUE MG A 348' AC4 Software A NA 349 ? 6 'BINDING SITE FOR RESIDUE NA A 349' AC5 Software A NA 350 ? 5 'BINDING SITE FOR RESIDUE NA A 350' AC6 Software A CL 351 ? 3 'BINDING SITE FOR RESIDUE CL A 351' AC7 Software A CL 352 ? 4 'BINDING SITE FOR RESIDUE CL A 352' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 HOH L . ? HOH A 1 . ? 1_555 ? 2 AC1 23 HOH L . ? HOH A 2 . ? 1_555 ? 3 AC1 23 GLY A 170 ? GLY A 179 . ? 1_555 ? 4 AC1 23 SER A 171 ? SER A 180 . ? 1_555 ? 5 AC1 23 ARG A 174 ? ARG A 183 . ? 1_555 ? 6 AC1 23 GLY A 180 ? GLY A 189 . ? 1_555 ? 7 AC1 23 ASP A 181 ? ASP A 190 . ? 1_555 ? 8 AC1 23 ASP A 183 ? ASP A 192 . ? 1_555 ? 9 AC1 23 TYR A 262 ? TYR A 271 . ? 1_555 ? 10 AC1 23 PHE A 263 ? PHE A 272 . ? 1_555 ? 11 AC1 23 THR A 264 ? THR A 273 . ? 1_555 ? 12 AC1 23 GLY A 265 ? GLY A 274 . ? 1_555 ? 13 AC1 23 ASP A 267 ? ASP A 276 . ? 1_555 ? 14 AC1 23 ASN A 270 ? ASN A 279 . ? 1_555 ? 15 AC1 23 MG F . ? MG A 347 . ? 1_555 ? 16 AC1 23 MG G . ? MG A 348 . ? 1_555 ? 17 AC1 23 HOH L . ? HOH A 362 . ? 1_555 ? 18 AC1 23 HOH L . ? HOH A 427 . ? 1_555 ? 19 AC1 23 HOH L . ? HOH A 448 . ? 1_555 ? 20 AC1 23 HOH L . ? HOH A 459 . ? 1_555 ? 21 AC1 23 HOH L . ? HOH A 488 . ? 1_555 ? 22 AC1 23 DC C 10 ? DC P 10 . ? 1_555 ? 23 AC1 23 DA B 6 ? DA T 6 . ? 1_555 ? 24 AC2 5 HOH L . ? HOH A 1 . ? 1_555 ? 25 AC2 5 ASP A 181 ? ASP A 190 . ? 1_555 ? 26 AC2 5 ASP A 183 ? ASP A 192 . ? 1_555 ? 27 AC2 5 4BD E . ? 4BD A 346 . ? 1_555 ? 28 AC2 5 MG G . ? MG A 348 . ? 1_555 ? 29 AC3 7 HOH L . ? HOH A 2 . ? 1_555 ? 30 AC3 7 ASP A 181 ? ASP A 190 . ? 1_555 ? 31 AC3 7 ASP A 183 ? ASP A 192 . ? 1_555 ? 32 AC3 7 ASP A 247 ? ASP A 256 . ? 1_555 ? 33 AC3 7 4BD E . ? 4BD A 346 . ? 1_555 ? 34 AC3 7 MG F . ? MG A 347 . ? 1_555 ? 35 AC3 7 DC C 10 ? DC P 10 . ? 1_555 ? 36 AC4 6 THR A 92 ? THR A 101 . ? 1_555 ? 37 AC4 6 VAL A 94 ? VAL A 103 . ? 1_555 ? 38 AC4 6 ILE A 97 ? ILE A 106 . ? 1_555 ? 39 AC4 6 HOH L . ? HOH A 510 . ? 1_555 ? 40 AC4 6 DG C 9 ? DG P 9 . ? 1_555 ? 41 AC4 6 HOH N . ? HOH P 56 . ? 1_555 ? 42 AC5 5 LYS A 51 ? LYS A 60 . ? 1_555 ? 43 AC5 5 LEU A 53 ? LEU A 62 . ? 1_555 ? 44 AC5 5 VAL A 56 ? VAL A 65 . ? 1_555 ? 45 AC5 5 DC D 3 ? DC D 3 . ? 1_555 ? 46 AC5 5 HOH O . ? HOH D 55 . ? 1_555 ? 47 AC6 3 ASN A 285 ? ASN A 294 . ? 1_555 ? 48 AC6 3 THR A 288 ? THR A 297 . ? 1_555 ? 49 AC6 3 ARG A 290 ? ARG A 299 . ? 1_555 ? 50 AC7 4 GLN A 255 ? GLN A 264 . ? 1_555 ? 51 AC7 4 CYS A 258 ? CYS A 267 . ? 1_555 ? 52 AC7 4 VAL A 304 ? VAL A 313 . ? 1_555 ? 53 AC7 4 HOH L . ? HOH A 450 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GDX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GDX _atom_sites.fract_transf_matrix[1][1] 0.019802 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006396 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012547 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019003 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL F MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 10 10 THR THR A . n A 1 2 LEU 2 11 11 LEU LEU A . n A 1 3 ASN 3 12 12 ASN ASN A . n A 1 4 GLY 4 13 13 GLY GLY A . n A 1 5 GLY 5 14 14 GLY GLY A . n A 1 6 ILE 6 15 15 ILE ILE A . n A 1 7 THR 7 16 16 THR THR A . n A 1 8 ASP 8 17 17 ASP ASP A . n A 1 9 MET 9 18 18 MET MET A . n A 1 10 LEU 10 19 19 LEU LEU A . n A 1 11 THR 11 20 20 THR THR A . n A 1 12 GLU 12 21 21 GLU GLU A . n A 1 13 LEU 13 22 22 LEU LEU A . n A 1 14 ALA 14 23 23 ALA ALA A . n A 1 15 ASN 15 24 24 ASN ASN A . n A 1 16 PHE 16 25 25 PHE PHE A . n A 1 17 GLU 17 26 26 GLU GLU A . n A 1 18 LYS 18 27 27 LYS LYS A . n A 1 19 ASN 19 28 28 ASN ASN A . n A 1 20 VAL 20 29 29 VAL VAL A . n A 1 21 SER 21 30 30 SER SER A . n A 1 22 GLN 22 31 31 GLN GLN A . n A 1 23 ALA 23 32 32 ALA ALA A . n A 1 24 ILE 24 33 33 ILE ILE A . n A 1 25 HIS 25 34 34 HIS HIS A . n A 1 26 LYS 26 35 35 LYS LYS A . n A 1 27 TYR 27 36 36 TYR TYR A . n A 1 28 ASN 28 37 37 ASN ASN A . n A 1 29 ALA 29 38 38 ALA ALA A . n A 1 30 TYR 30 39 39 TYR TYR A . n A 1 31 ARG 31 40 40 ARG ARG A . n A 1 32 LYS 32 41 41 LYS LYS A . n A 1 33 ALA 33 42 42 ALA ALA A . n A 1 34 ALA 34 43 43 ALA ALA A . n A 1 35 SER 35 44 44 SER SER A . n A 1 36 VAL 36 45 45 VAL VAL A . n A 1 37 ILE 37 46 46 ILE ILE A . n A 1 38 ALA 38 47 47 ALA ALA A . n A 1 39 LYS 39 48 48 LYS LYS A . n A 1 40 TYR 40 49 49 TYR TYR A . n A 1 41 PRO 41 50 50 PRO PRO A . n A 1 42 HIS 42 51 51 HIS HIS A . n A 1 43 LYS 43 52 52 LYS LYS A . n A 1 44 ILE 44 53 53 ILE ILE A . n A 1 45 LYS 45 54 54 LYS LYS A . n A 1 46 SER 46 55 55 SER SER A . n A 1 47 GLY 47 56 56 GLY GLY A . n A 1 48 ALA 48 57 57 ALA ALA A . n A 1 49 GLU 49 58 58 GLU GLU A . n A 1 50 ALA 50 59 59 ALA ALA A . n A 1 51 LYS 51 60 60 LYS LYS A . n A 1 52 LYS 52 61 61 LYS LYS A . n A 1 53 LEU 53 62 62 LEU LEU A . n A 1 54 PRO 54 63 63 PRO PRO A . n A 1 55 GLY 55 64 64 GLY GLY A . n A 1 56 VAL 56 65 65 VAL VAL A . n A 1 57 GLY 57 66 66 GLY GLY A . n A 1 58 THR 58 67 67 THR THR A . n A 1 59 LYS 59 68 68 LYS LYS A . n A 1 60 ILE 60 69 69 ILE ILE A . n A 1 61 ALA 61 70 70 ALA ALA A . n A 1 62 GLU 62 71 71 GLU GLU A . n A 1 63 LYS 63 72 72 LYS LYS A . n A 1 64 ILE 64 73 73 ILE ILE A . n A 1 65 ASP 65 74 74 ASP ASP A . n A 1 66 GLU 66 75 75 GLU GLU A . n A 1 67 PHE 67 76 76 PHE PHE A . n A 1 68 LEU 68 77 77 LEU LEU A . n A 1 69 ALA 69 78 78 ALA ALA A . n A 1 70 THR 70 79 79 THR THR A . n A 1 71 GLY 71 80 80 GLY GLY A . n A 1 72 LYS 72 81 81 LYS LYS A . n A 1 73 LEU 73 82 82 LEU LEU A . n A 1 74 ARG 74 83 83 ARG ARG A . n A 1 75 LYS 75 84 84 LYS LYS A . n A 1 76 LEU 76 85 85 LEU LEU A . n A 1 77 GLU 77 86 86 GLU GLU A . n A 1 78 LYS 78 87 87 LYS LYS A . n A 1 79 ILE 79 88 88 ILE ILE A . n A 1 80 ARG 80 89 89 ARG ARG A . n A 1 81 GLN 81 90 90 GLN GLN A . n A 1 82 ASP 82 91 91 ASP ASP A . n A 1 83 ASP 83 92 92 ASP ASP A . n A 1 84 THR 84 93 93 THR THR A . n A 1 85 SER 85 94 94 SER SER A . n A 1 86 SER 86 95 95 SER SER A . n A 1 87 SER 87 96 96 SER SER A . n A 1 88 ILE 88 97 97 ILE ILE A . n A 1 89 ASN 89 98 98 ASN ASN A . n A 1 90 PHE 90 99 99 PHE PHE A . n A 1 91 LEU 91 100 100 LEU LEU A . n A 1 92 THR 92 101 101 THR THR A . n A 1 93 ARG 93 102 102 ARG ARG A . n A 1 94 VAL 94 103 103 VAL VAL A . n A 1 95 SER 95 104 104 SER SER A . n A 1 96 GLY 96 105 105 GLY GLY A . n A 1 97 ILE 97 106 106 ILE ILE A . n A 1 98 GLY 98 107 107 GLY GLY A . n A 1 99 PRO 99 108 108 PRO PRO A . n A 1 100 SER 100 109 109 SER SER A . n A 1 101 ALA 101 110 110 ALA ALA A . n A 1 102 ALA 102 111 111 ALA ALA A . n A 1 103 ARG 103 112 112 ARG ARG A . n A 1 104 LYS 104 113 113 LYS LYS A . n A 1 105 PHE 105 114 114 PHE PHE A . n A 1 106 VAL 106 115 115 VAL VAL A . n A 1 107 ASP 107 116 116 ASP ASP A . n A 1 108 GLU 108 117 117 GLU GLU A . n A 1 109 GLY 109 118 118 GLY GLY A . n A 1 110 ILE 110 119 119 ILE ILE A . n A 1 111 LYS 111 120 120 LYS LYS A . n A 1 112 THR 112 121 121 THR THR A . n A 1 113 LEU 113 122 122 LEU LEU A . n A 1 114 GLU 114 123 123 GLU GLU A . n A 1 115 ASP 115 124 124 ASP ASP A . n A 1 116 LEU 116 125 125 LEU LEU A . n A 1 117 ARG 117 126 126 ARG ARG A . n A 1 118 LYS 118 127 127 LYS LYS A . n A 1 119 ASN 119 128 128 ASN ASN A . n A 1 120 GLU 120 129 129 GLU GLU A . n A 1 121 ASP 121 130 130 ASP ASP A . n A 1 122 LYS 122 131 131 LYS LYS A . n A 1 123 LEU 123 132 132 LEU LEU A . n A 1 124 ASN 124 133 133 ASN ASN A . n A 1 125 HIS 125 134 134 HIS HIS A . n A 1 126 HIS 126 135 135 HIS HIS A . n A 1 127 GLN 127 136 136 GLN GLN A . n A 1 128 ARG 128 137 137 ARG ARG A . n A 1 129 ILE 129 138 138 ILE ILE A . n A 1 130 GLY 130 139 139 GLY GLY A . n A 1 131 LEU 131 140 140 LEU LEU A . n A 1 132 LYS 132 141 141 LYS LYS A . n A 1 133 TYR 133 142 142 TYR TYR A . n A 1 134 PHE 134 143 143 PHE PHE A . n A 1 135 GLY 135 144 144 GLY GLY A . n A 1 136 ASP 136 145 145 ASP ASP A . n A 1 137 PHE 137 146 146 PHE PHE A . n A 1 138 GLU 138 147 147 GLU GLU A . n A 1 139 LYS 139 148 148 LYS LYS A . n A 1 140 ARG 140 149 149 ARG ARG A . n A 1 141 ILE 141 150 150 ILE ILE A . n A 1 142 PRO 142 151 151 PRO PRO A . n A 1 143 ARG 143 152 152 ARG ARG A . n A 1 144 GLU 144 153 153 GLU GLU A . n A 1 145 GLU 145 154 154 GLU GLU A . n A 1 146 MET 146 155 155 MET MET A . n A 1 147 LEU 147 156 156 LEU LEU A . n A 1 148 GLN 148 157 157 GLN GLN A . n A 1 149 MET 149 158 158 MET MET A . n A 1 150 GLN 150 159 159 GLN GLN A . n A 1 151 ASP 151 160 160 ASP ASP A . n A 1 152 ILE 152 161 161 ILE ILE A . n A 1 153 VAL 153 162 162 VAL VAL A . n A 1 154 LEU 154 163 163 LEU LEU A . n A 1 155 ASN 155 164 164 ASN ASN A . n A 1 156 GLU 156 165 165 GLU GLU A . n A 1 157 VAL 157 166 166 VAL VAL A . n A 1 158 LYS 158 167 167 LYS LYS A . n A 1 159 LYS 159 168 168 LYS LYS A . n A 1 160 VAL 160 169 169 VAL VAL A . n A 1 161 ASP 161 170 170 ASP ASP A . n A 1 162 SER 162 171 171 SER SER A . n A 1 163 GLU 163 172 172 GLU GLU A . n A 1 164 TYR 164 173 173 TYR TYR A . n A 1 165 ILE 165 174 174 ILE ILE A . n A 1 166 ALA 166 175 175 ALA ALA A . n A 1 167 THR 167 176 176 THR THR A . n A 1 168 VAL 168 177 177 VAL VAL A . n A 1 169 CYS 169 178 178 CYS CYS A . n A 1 170 GLY 170 179 179 GLY GLY A . n A 1 171 SER 171 180 180 SER SER A . n A 1 172 PHE 172 181 181 PHE PHE A . n A 1 173 ARG 173 182 182 ARG ARG A . n A 1 174 ARG 174 183 183 ARG ARG A . n A 1 175 GLY 175 184 184 GLY GLY A . n A 1 176 ALA 176 185 185 ALA ALA A . n A 1 177 GLU 177 186 186 GLU GLU A . n A 1 178 SER 178 187 187 SER SER A . n A 1 179 SER 179 188 188 SER SER A . n A 1 180 GLY 180 189 189 GLY GLY A . n A 1 181 ASP 181 190 190 ASP ASP A . n A 1 182 MET 182 191 191 MET MET A . n A 1 183 ASP 183 192 192 ASP ASP A . n A 1 184 VAL 184 193 193 VAL VAL A . n A 1 185 LEU 185 194 194 LEU LEU A . n A 1 186 LEU 186 195 195 LEU LEU A . n A 1 187 THR 187 196 196 THR THR A . n A 1 188 HIS 188 197 197 HIS HIS A . n A 1 189 PRO 189 198 198 PRO PRO A . n A 1 190 SER 190 199 199 SER SER A . n A 1 191 PHE 191 200 200 PHE PHE A . n A 1 192 THR 192 201 201 THR THR A . n A 1 193 SER 193 202 202 SER SER A . n A 1 194 GLU 194 203 203 GLU GLU A . n A 1 195 SER 195 204 204 SER SER A . n A 1 196 THR 196 205 205 THR THR A . n A 1 197 LYS 197 206 206 LYS LYS A . n A 1 198 GLN 198 207 207 GLN GLN A . n A 1 199 PRO 199 208 208 PRO PRO A . n A 1 200 LYS 200 209 209 LYS LYS A . n A 1 201 LEU 201 210 210 LEU LEU A . n A 1 202 LEU 202 211 211 LEU LEU A . n A 1 203 HIS 203 212 212 HIS HIS A . n A 1 204 GLN 204 213 213 GLN GLN A . n A 1 205 VAL 205 214 214 VAL VAL A . n A 1 206 VAL 206 215 215 VAL VAL A . n A 1 207 GLU 207 216 216 GLU GLU A . n A 1 208 GLN 208 217 217 GLN GLN A . n A 1 209 LEU 209 218 218 LEU LEU A . n A 1 210 GLN 210 219 219 GLN GLN A . n A 1 211 LYS 211 220 220 LYS LYS A . n A 1 212 VAL 212 221 221 VAL VAL A . n A 1 213 HIS 213 222 222 HIS HIS A . n A 1 214 PHE 214 223 223 PHE PHE A . n A 1 215 ILE 215 224 224 ILE ILE A . n A 1 216 THR 216 225 225 THR THR A . n A 1 217 ASP 217 226 226 ASP ASP A . n A 1 218 THR 218 227 227 THR THR A . n A 1 219 LEU 219 228 228 LEU LEU A . n A 1 220 SER 220 229 229 SER SER A . n A 1 221 LYS 221 230 230 LYS LYS A . n A 1 222 GLY 222 231 231 GLY GLY A . n A 1 223 GLU 223 232 232 GLU GLU A . n A 1 224 THR 224 233 233 THR THR A . n A 1 225 LYS 225 234 234 LYS LYS A . n A 1 226 PHE 226 235 235 PHE PHE A . n A 1 227 MET 227 236 236 MET MET A . n A 1 228 GLY 228 237 237 GLY GLY A . n A 1 229 VAL 229 238 238 VAL VAL A . n A 1 230 CYS 230 239 239 CYS CYS A . n A 1 231 GLN 231 240 240 GLN GLN A . n A 1 232 LEU 232 241 241 LEU LEU A . n A 1 233 PRO 233 242 242 PRO PRO A . n A 1 234 SER 234 243 243 SER SER A . n A 1 235 LYS 235 244 244 LYS LYS A . n A 1 236 ASN 236 245 245 ASN ASN A . n A 1 237 ASP 237 246 246 ASP ASP A . n A 1 238 GLU 238 247 247 GLU GLU A . n A 1 239 LYS 239 248 248 LYS LYS A . n A 1 240 GLU 240 249 249 GLU GLU A . n A 1 241 TYR 241 250 250 TYR TYR A . n A 1 242 PRO 242 251 251 PRO PRO A . n A 1 243 HIS 243 252 252 HIS HIS A . n A 1 244 ARG 244 253 253 ARG ARG A . n A 1 245 ARG 245 254 254 ARG ARG A . n A 1 246 ILE 246 255 255 ILE ILE A . n A 1 247 ASP 247 256 256 ASP ASP A . n A 1 248 ILE 248 257 257 ILE ILE A . n A 1 249 ARG 249 258 258 ARG ARG A . n A 1 250 LEU 250 259 259 LEU LEU A . n A 1 251 ILE 251 260 260 ILE ILE A . n A 1 252 PRO 252 261 261 PRO PRO A . n A 1 253 LYS 253 262 262 LYS LYS A . n A 1 254 ASP 254 263 263 ASP ASP A . n A 1 255 GLN 255 264 264 GLN GLN A . n A 1 256 TYR 256 265 265 TYR TYR A . n A 1 257 TYR 257 266 266 TYR TYR A . n A 1 258 CYS 258 267 267 CYS CYS A . n A 1 259 GLY 259 268 268 GLY GLY A . n A 1 260 VAL 260 269 269 VAL VAL A . n A 1 261 LEU 261 270 270 LEU LEU A . n A 1 262 TYR 262 271 271 TYR TYR A . n A 1 263 PHE 263 272 272 PHE PHE A . n A 1 264 THR 264 273 273 THR THR A . n A 1 265 GLY 265 274 274 GLY GLY A . n A 1 266 SER 266 275 275 SER SER A . n A 1 267 ASP 267 276 276 ASP ASP A . n A 1 268 ILE 268 277 277 ILE ILE A . n A 1 269 PHE 269 278 278 PHE PHE A . n A 1 270 ASN 270 279 279 ASN ASN A . n A 1 271 LYS 271 280 280 LYS LYS A . n A 1 272 ASN 272 281 281 ASN ASN A . n A 1 273 MET 273 282 282 MET MET A . n A 1 274 ARG 274 283 283 ARG ARG A . n A 1 275 ALA 275 284 284 ALA ALA A . n A 1 276 HIS 276 285 285 HIS HIS A . n A 1 277 ALA 277 286 286 ALA ALA A . n A 1 278 LEU 278 287 287 LEU LEU A . n A 1 279 GLU 279 288 288 GLU GLU A . n A 1 280 LYS 280 289 289 LYS LYS A . n A 1 281 GLY 281 290 290 GLY GLY A . n A 1 282 PHE 282 291 291 PHE PHE A . n A 1 283 THR 283 292 292 THR THR A . n A 1 284 ILE 284 293 293 ILE ILE A . n A 1 285 ASN 285 294 294 ASN ASN A . n A 1 286 GLU 286 295 295 GLU GLU A . n A 1 287 TYR 287 296 296 TYR TYR A . n A 1 288 THR 288 297 297 THR THR A . n A 1 289 ILE 289 298 298 ILE ILE A . n A 1 290 ARG 290 299 299 ARG ARG A . n A 1 291 PRO 291 300 300 PRO PRO A . n A 1 292 LEU 292 301 301 LEU LEU A . n A 1 293 GLY 293 302 302 GLY GLY A . n A 1 294 VAL 294 303 303 VAL VAL A . n A 1 295 THR 295 304 304 THR THR A . n A 1 296 GLY 296 305 305 GLY GLY A . n A 1 297 VAL 297 306 306 VAL VAL A . n A 1 298 ALA 298 307 307 ALA ALA A . n A 1 299 GLY 299 308 308 GLY GLY A . n A 1 300 GLU 300 309 309 GLU GLU A . n A 1 301 PRO 301 310 310 PRO PRO A . n A 1 302 LEU 302 311 311 LEU LEU A . n A 1 303 PRO 303 312 312 PRO PRO A . n A 1 304 VAL 304 313 313 VAL VAL A . n A 1 305 ASP 305 314 314 ASP ASP A . n A 1 306 SER 306 315 315 SER SER A . n A 1 307 GLU 307 316 316 GLU GLU A . n A 1 308 LYS 308 317 317 LYS LYS A . n A 1 309 ASP 309 318 318 ASP ASP A . n A 1 310 ILE 310 319 319 ILE ILE A . n A 1 311 PHE 311 320 320 PHE PHE A . n A 1 312 ASP 312 321 321 ASP ASP A . n A 1 313 TYR 313 322 322 TYR TYR A . n A 1 314 ILE 314 323 323 ILE ILE A . n A 1 315 GLN 315 324 324 GLN GLN A . n A 1 316 TRP 316 325 325 TRP TRP A . n A 1 317 LYS 317 326 326 LYS LYS A . n A 1 318 TYR 318 327 327 TYR TYR A . n A 1 319 ARG 319 328 328 ARG ARG A . n A 1 320 GLU 320 329 329 GLU GLU A . n A 1 321 PRO 321 330 330 PRO PRO A . n A 1 322 LYS 322 331 331 LYS LYS A . n A 1 323 ASP 323 332 332 ASP ASP A . n A 1 324 ARG 324 333 333 ARG ARG A . n A 1 325 SER 325 334 334 SER SER A . n A 1 326 GLU 326 335 335 GLU GLU A . n B 2 1 DC 1 1 1 DC C T . n B 2 2 DC 2 2 2 DC C T . n B 2 3 DG 3 3 3 DG G T . n B 2 4 DA 4 4 4 DA A T . n B 2 5 DC 5 5 5 DC C T . n B 2 6 DA 6 6 6 DA A T . n B 2 7 DG 7 7 7 DG G T . n B 2 8 DC 8 8 8 DC C T . n B 2 9 DG 9 9 9 DG G T . n B 2 10 DC 10 10 10 DC C T . n B 2 11 DA 11 11 11 DA A T . n B 2 12 DT 12 12 12 DT T T . n B 2 13 DC 13 13 13 DC C T . n B 2 14 DA 14 14 14 DA A T . n B 2 15 DG 15 15 15 DG G T . n B 2 16 DC 16 16 16 DC C T . n C 3 1 DG 1 1 1 DG G P . n C 3 2 DC 2 2 2 DC C P . n C 3 3 DT 3 3 3 DT T P . n C 3 4 DG 4 4 4 DG G P . n C 3 5 DA 5 5 5 DA A P . n C 3 6 DT 6 6 6 DT T P . n C 3 7 DG 7 7 7 DG G P . n C 3 8 DC 8 8 8 DC C P . n C 3 9 DG 9 9 9 DG G P . n C 3 10 DC 10 10 10 DC C P . n D 4 1 DG 1 1 1 DG G D . n D 4 2 DT 2 2 2 DT T D . n D 4 3 DC 3 3 3 DC C D . n D 4 4 DG 4 4 4 DG G D . n D 4 5 DG 5 5 5 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 4BD 1 346 338 4BD 4BD A . F 6 MG 1 347 339 MG MG A . G 6 MG 1 348 340 MG MG A . H 7 NA 1 349 341 NA NA A . I 7 NA 1 350 342 NA NA A . J 8 CL 1 351 343 CL CL A . K 8 CL 1 352 344 CL CL A . L 9 HOH 1 1 1 HOH HOH A . L 9 HOH 2 2 2 HOH HOH A . L 9 HOH 3 3 3 HOH HOH A . L 9 HOH 4 4 4 HOH HOH A . L 9 HOH 5 5 5 HOH HOH A . L 9 HOH 6 6 6 HOH HOH A . L 9 HOH 7 7 7 HOH HOH A . L 9 HOH 8 8 8 HOH HOH A . L 9 HOH 9 9 9 HOH HOH A . L 9 HOH 10 353 11 HOH HOH A . L 9 HOH 11 354 12 HOH HOH A . L 9 HOH 12 355 355 HOH HOH A . L 9 HOH 13 356 356 HOH HOH A . L 9 HOH 14 357 357 HOH HOH A . L 9 HOH 15 358 358 HOH HOH A . L 9 HOH 16 359 359 HOH HOH A . L 9 HOH 17 360 360 HOH HOH A . L 9 HOH 18 361 13 HOH HOH A . L 9 HOH 19 362 14 HOH HOH A . L 9 HOH 20 363 363 HOH HOH A . L 9 HOH 21 364 364 HOH HOH A . L 9 HOH 22 365 365 HOH HOH A . L 9 HOH 23 366 366 HOH HOH A . L 9 HOH 24 367 367 HOH HOH A . L 9 HOH 25 368 368 HOH HOH A . L 9 HOH 26 369 369 HOH HOH A . L 9 HOH 27 370 370 HOH HOH A . L 9 HOH 28 371 16 HOH HOH A . L 9 HOH 29 372 17 HOH HOH A . L 9 HOH 30 373 373 HOH HOH A . L 9 HOH 31 374 374 HOH HOH A . L 9 HOH 32 375 375 HOH HOH A . L 9 HOH 33 376 376 HOH HOH A . L 9 HOH 34 377 377 HOH HOH A . L 9 HOH 35 378 378 HOH HOH A . L 9 HOH 36 379 379 HOH HOH A . L 9 HOH 37 380 380 HOH HOH A . L 9 HOH 38 381 18 HOH HOH A . L 9 HOH 39 382 382 HOH HOH A . L 9 HOH 40 383 19 HOH HOH A . L 9 HOH 41 384 384 HOH HOH A . L 9 HOH 42 385 385 HOH HOH A . L 9 HOH 43 386 386 HOH HOH A . L 9 HOH 44 387 387 HOH HOH A . L 9 HOH 45 388 388 HOH HOH A . L 9 HOH 46 389 389 HOH HOH A . L 9 HOH 47 390 390 HOH HOH A . L 9 HOH 48 391 391 HOH HOH A . L 9 HOH 49 392 392 HOH HOH A . L 9 HOH 50 393 393 HOH HOH A . L 9 HOH 51 394 394 HOH HOH A . L 9 HOH 52 395 395 HOH HOH A . L 9 HOH 53 396 396 HOH HOH A . L 9 HOH 54 397 397 HOH HOH A . L 9 HOH 55 398 398 HOH HOH A . L 9 HOH 56 399 399 HOH HOH A . L 9 HOH 57 400 400 HOH HOH A . L 9 HOH 58 401 401 HOH HOH A . L 9 HOH 59 402 402 HOH HOH A . L 9 HOH 60 403 403 HOH HOH A . L 9 HOH 61 404 404 HOH HOH A . L 9 HOH 62 405 405 HOH HOH A . L 9 HOH 63 406 406 HOH HOH A . L 9 HOH 64 407 407 HOH HOH A . L 9 HOH 65 408 408 HOH HOH A . L 9 HOH 66 409 409 HOH HOH A . L 9 HOH 67 410 20 HOH HOH A . L 9 HOH 68 411 411 HOH HOH A . L 9 HOH 69 412 21 HOH HOH A . L 9 HOH 70 413 22 HOH HOH A . L 9 HOH 71 414 23 HOH HOH A . L 9 HOH 72 415 24 HOH HOH A . L 9 HOH 73 416 25 HOH HOH A . L 9 HOH 74 417 26 HOH HOH A . L 9 HOH 75 418 27 HOH HOH A . L 9 HOH 76 419 28 HOH HOH A . L 9 HOH 77 420 29 HOH HOH A . L 9 HOH 78 421 30 HOH HOH A . L 9 HOH 79 422 32 HOH HOH A . L 9 HOH 80 423 33 HOH HOH A . L 9 HOH 81 424 34 HOH HOH A . L 9 HOH 82 425 36 HOH HOH A . L 9 HOH 83 426 38 HOH HOH A . L 9 HOH 84 427 39 HOH HOH A . L 9 HOH 85 428 40 HOH HOH A . L 9 HOH 86 429 41 HOH HOH A . L 9 HOH 87 430 42 HOH HOH A . L 9 HOH 88 431 43 HOH HOH A . L 9 HOH 89 432 44 HOH HOH A . L 9 HOH 90 433 46 HOH HOH A . L 9 HOH 91 434 47 HOH HOH A . L 9 HOH 92 435 48 HOH HOH A . L 9 HOH 93 436 49 HOH HOH A . L 9 HOH 94 437 50 HOH HOH A . L 9 HOH 95 438 51 HOH HOH A . L 9 HOH 96 439 53 HOH HOH A . L 9 HOH 97 440 54 HOH HOH A . L 9 HOH 98 441 57 HOH HOH A . L 9 HOH 99 442 58 HOH HOH A . L 9 HOH 100 443 60 HOH HOH A . L 9 HOH 101 444 61 HOH HOH A . L 9 HOH 102 445 62 HOH HOH A . L 9 HOH 103 446 64 HOH HOH A . L 9 HOH 104 447 65 HOH HOH A . L 9 HOH 105 448 66 HOH HOH A . L 9 HOH 106 449 67 HOH HOH A . L 9 HOH 107 450 68 HOH HOH A . L 9 HOH 108 451 69 HOH HOH A . L 9 HOH 109 452 70 HOH HOH A . L 9 HOH 110 453 71 HOH HOH A . L 9 HOH 111 454 72 HOH HOH A . L 9 HOH 112 455 73 HOH HOH A . L 9 HOH 113 456 74 HOH HOH A . L 9 HOH 114 457 75 HOH HOH A . L 9 HOH 115 458 76 HOH HOH A . L 9 HOH 116 459 77 HOH HOH A . L 9 HOH 117 460 79 HOH HOH A . L 9 HOH 118 461 80 HOH HOH A . L 9 HOH 119 462 81 HOH HOH A . L 9 HOH 120 463 82 HOH HOH A . L 9 HOH 121 464 84 HOH HOH A . L 9 HOH 122 465 85 HOH HOH A . L 9 HOH 123 466 86 HOH HOH A . L 9 HOH 124 467 87 HOH HOH A . L 9 HOH 125 468 88 HOH HOH A . L 9 HOH 126 469 89 HOH HOH A . L 9 HOH 127 470 90 HOH HOH A . L 9 HOH 128 471 91 HOH HOH A . L 9 HOH 129 472 92 HOH HOH A . L 9 HOH 130 473 93 HOH HOH A . L 9 HOH 131 474 98 HOH HOH A . L 9 HOH 132 475 99 HOH HOH A . L 9 HOH 133 476 100 HOH HOH A . L 9 HOH 134 477 103 HOH HOH A . L 9 HOH 135 478 104 HOH HOH A . L 9 HOH 136 479 105 HOH HOH A . L 9 HOH 137 480 106 HOH HOH A . L 9 HOH 138 481 108 HOH HOH A . L 9 HOH 139 482 109 HOH HOH A . L 9 HOH 140 483 110 HOH HOH A . L 9 HOH 141 484 111 HOH HOH A . L 9 HOH 142 485 112 HOH HOH A . L 9 HOH 143 486 113 HOH HOH A . L 9 HOH 144 487 115 HOH HOH A . L 9 HOH 145 488 116 HOH HOH A . L 9 HOH 146 489 117 HOH HOH A . L 9 HOH 147 490 118 HOH HOH A . L 9 HOH 148 491 119 HOH HOH A . L 9 HOH 149 492 120 HOH HOH A . L 9 HOH 150 493 121 HOH HOH A . L 9 HOH 151 494 122 HOH HOH A . L 9 HOH 152 495 123 HOH HOH A . L 9 HOH 153 496 124 HOH HOH A . L 9 HOH 154 497 126 HOH HOH A . L 9 HOH 155 498 127 HOH HOH A . L 9 HOH 156 499 128 HOH HOH A . L 9 HOH 157 500 131 HOH HOH A . L 9 HOH 158 501 132 HOH HOH A . L 9 HOH 159 502 134 HOH HOH A . L 9 HOH 160 503 135 HOH HOH A . L 9 HOH 161 504 137 HOH HOH A . L 9 HOH 162 505 138 HOH HOH A . L 9 HOH 163 506 139 HOH HOH A . L 9 HOH 164 507 140 HOH HOH A . L 9 HOH 165 508 141 HOH HOH A . L 9 HOH 166 509 142 HOH HOH A . L 9 HOH 167 510 143 HOH HOH A . L 9 HOH 168 511 145 HOH HOH A . L 9 HOH 169 512 146 HOH HOH A . L 9 HOH 170 513 147 HOH HOH A . L 9 HOH 171 514 149 HOH HOH A . L 9 HOH 172 515 150 HOH HOH A . L 9 HOH 173 516 151 HOH HOH A . L 9 HOH 174 517 152 HOH HOH A . L 9 HOH 175 518 153 HOH HOH A . L 9 HOH 176 519 154 HOH HOH A . L 9 HOH 177 520 155 HOH HOH A . L 9 HOH 178 521 156 HOH HOH A . L 9 HOH 179 522 157 HOH HOH A . L 9 HOH 180 523 158 HOH HOH A . L 9 HOH 181 524 160 HOH HOH A . L 9 HOH 182 525 161 HOH HOH A . L 9 HOH 183 526 162 HOH HOH A . L 9 HOH 184 527 163 HOH HOH A . L 9 HOH 185 528 164 HOH HOH A . L 9 HOH 186 529 165 HOH HOH A . L 9 HOH 187 530 166 HOH HOH A . L 9 HOH 188 531 169 HOH HOH A . L 9 HOH 189 532 170 HOH HOH A . L 9 HOH 190 533 171 HOH HOH A . L 9 HOH 191 534 172 HOH HOH A . L 9 HOH 192 535 176 HOH HOH A . L 9 HOH 193 536 300 HOH HOH A . L 9 HOH 194 537 301 HOH HOH A . L 9 HOH 195 538 302 HOH HOH A . L 9 HOH 196 539 305 HOH HOH A . L 9 HOH 197 540 306 HOH HOH A . L 9 HOH 198 541 308 HOH HOH A . L 9 HOH 199 542 310 HOH HOH A . L 9 HOH 200 543 312 HOH HOH A . L 9 HOH 201 544 313 HOH HOH A . L 9 HOH 202 545 314 HOH HOH A . L 9 HOH 203 546 316 HOH HOH A . L 9 HOH 204 547 317 HOH HOH A . L 9 HOH 205 548 318 HOH HOH A . L 9 HOH 206 549 319 HOH HOH A . L 9 HOH 207 550 320 HOH HOH A . L 9 HOH 208 551 321 HOH HOH A . L 9 HOH 209 552 323 HOH HOH A . L 9 HOH 210 553 324 HOH HOH A . L 9 HOH 211 554 325 HOH HOH A . L 9 HOH 212 555 326 HOH HOH A . L 9 HOH 213 556 327 HOH HOH A . L 9 HOH 214 557 328 HOH HOH A . L 9 HOH 215 558 329 HOH HOH A . L 9 HOH 216 559 330 HOH HOH A . L 9 HOH 217 560 334 HOH HOH A . L 9 HOH 218 561 335 HOH HOH A . L 9 HOH 219 562 336 HOH HOH A . L 9 HOH 220 563 339 HOH HOH A . L 9 HOH 221 564 340 HOH HOH A . L 9 HOH 222 565 341 HOH HOH A . L 9 HOH 223 566 342 HOH HOH A . L 9 HOH 224 567 343 HOH HOH A . L 9 HOH 225 568 344 HOH HOH A . M 9 HOH 1 17 10 HOH HOH T . M 9 HOH 2 18 15 HOH HOH T . M 9 HOH 3 35 35 HOH HOH T . M 9 HOH 4 59 59 HOH HOH T . M 9 HOH 5 83 83 HOH HOH T . M 9 HOH 6 95 95 HOH HOH T . M 9 HOH 7 97 97 HOH HOH T . M 9 HOH 8 101 101 HOH HOH T . M 9 HOH 9 102 102 HOH HOH T . M 9 HOH 10 114 114 HOH HOH T . M 9 HOH 11 125 125 HOH HOH T . M 9 HOH 12 136 136 HOH HOH T . M 9 HOH 13 148 148 HOH HOH T . M 9 HOH 14 167 167 HOH HOH T . M 9 HOH 15 168 168 HOH HOH T . M 9 HOH 16 173 173 HOH HOH T . M 9 HOH 17 174 174 HOH HOH T . M 9 HOH 18 304 304 HOH HOH T . M 9 HOH 19 315 315 HOH HOH T . M 9 HOH 20 322 322 HOH HOH T . M 9 HOH 21 351 351 HOH HOH T . M 9 HOH 22 352 352 HOH HOH T . M 9 HOH 23 353 353 HOH HOH T . M 9 HOH 24 354 354 HOH HOH T . M 9 HOH 25 361 361 HOH HOH T . M 9 HOH 26 362 362 HOH HOH T . M 9 HOH 27 383 383 HOH HOH T . M 9 HOH 28 410 410 HOH HOH T . N 9 HOH 1 45 45 HOH HOH P . N 9 HOH 2 56 56 HOH HOH P . N 9 HOH 3 63 63 HOH HOH P . N 9 HOH 4 78 78 HOH HOH P . N 9 HOH 5 107 107 HOH HOH P . N 9 HOH 6 129 129 HOH HOH P . N 9 HOH 7 133 133 HOH HOH P . N 9 HOH 8 144 144 HOH HOH P . N 9 HOH 9 159 159 HOH HOH P . N 9 HOH 10 175 175 HOH HOH P . N 9 HOH 11 303 303 HOH HOH P . N 9 HOH 12 337 337 HOH HOH P . O 9 HOH 1 31 31 HOH HOH D . O 9 HOH 2 37 37 HOH HOH D . O 9 HOH 3 52 52 HOH HOH D . O 9 HOH 4 55 55 HOH HOH D . O 9 HOH 5 94 94 HOH HOH D . O 9 HOH 6 96 96 HOH HOH D . O 9 HOH 7 130 130 HOH HOH D . O 9 HOH 8 331 331 HOH HOH D . O 9 HOH 9 338 338 HOH HOH D . O 9 HOH 10 371 371 HOH HOH D . O 9 HOH 11 372 372 HOH HOH D . O 9 HOH 12 381 381 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6090 ? 1 MORE -92 ? 1 'SSA (A^2)' 19900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? L HOH . ? A HOH 1 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 OD1 ? A ASP 181 ? A ASP 190 ? 1_555 84.1 ? 2 O ? L HOH . ? A HOH 1 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 OD2 ? A ASP 183 ? A ASP 192 ? 1_555 86.5 ? 3 OD1 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 OD2 ? A ASP 183 ? A ASP 192 ? 1_555 108.1 ? 4 O ? L HOH . ? A HOH 1 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 162.6 ? 5 OD1 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 112.9 ? 6 OD2 ? A ASP 183 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 84.5 ? 7 O ? L HOH . ? A HOH 1 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O2B ? E 4BD . ? A 4BD 346 ? 1_555 78.8 ? 8 OD1 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O2B ? E 4BD . ? A 4BD 346 ? 1_555 160.8 ? 9 OD2 ? A ASP 183 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O2B ? E 4BD . ? A 4BD 346 ? 1_555 79.7 ? 10 O1A ? E 4BD . ? A 4BD 346 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O2B ? E 4BD . ? A 4BD 346 ? 1_555 85.0 ? 11 O ? L HOH . ? A HOH 1 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O3G ? E 4BD . ? A 4BD 346 ? 1_555 91.2 ? 12 OD1 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O3G ? E 4BD . ? A 4BD 346 ? 1_555 87.2 ? 13 OD2 ? A ASP 183 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O3G ? E 4BD . ? A 4BD 346 ? 1_555 164.2 ? 14 O1A ? E 4BD . ? A 4BD 346 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O3G ? E 4BD . ? A 4BD 346 ? 1_555 93.5 ? 15 O2B ? E 4BD . ? A 4BD 346 ? 1_555 MG ? F MG . ? A MG 347 ? 1_555 O3G ? E 4BD . ? A 4BD 346 ? 1_555 84.5 ? 16 O ? L HOH . ? A HOH 2 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 OD2 ? A ASP 181 ? A ASP 190 ? 1_555 81.3 ? 17 O ? L HOH . ? A HOH 2 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 OD1 ? A ASP 183 ? A ASP 192 ? 1_555 165.8 ? 18 OD2 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 OD1 ? A ASP 183 ? A ASP 192 ? 1_555 88.8 ? 19 O ? L HOH . ? A HOH 2 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 OD2 ? A ASP 247 ? A ASP 256 ? 1_555 93.0 ? 20 OD2 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 OD2 ? A ASP 247 ? A ASP 256 ? 1_555 92.9 ? 21 OD1 ? A ASP 183 ? A ASP 192 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 OD2 ? A ASP 247 ? A ASP 256 ? 1_555 97.5 ? 22 O ? L HOH . ? A HOH 2 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 78.5 ? 23 OD2 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 92.0 ? 24 OD1 ? A ASP 183 ? A ASP 192 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 91.9 ? 25 OD2 ? A ASP 247 ? A ASP 256 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 O1A ? E 4BD . ? A 4BD 346 ? 1_555 169.5 ? 26 O ? L HOH . ? A HOH 2 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 "O3'" ? C DC 10 ? P DC 10 ? 1_555 89.9 ? 27 OD2 ? A ASP 181 ? A ASP 190 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 "O3'" ? C DC 10 ? P DC 10 ? 1_555 169.2 ? 28 OD1 ? A ASP 183 ? A ASP 192 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 "O3'" ? C DC 10 ? P DC 10 ? 1_555 101.0 ? 29 OD2 ? A ASP 247 ? A ASP 256 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 "O3'" ? C DC 10 ? P DC 10 ? 1_555 81.4 ? 30 O1A ? E 4BD . ? A 4BD 346 ? 1_555 MG ? G MG . ? A MG 348 ? 1_555 "O3'" ? C DC 10 ? P DC 10 ? 1_555 92.3 ? 31 O ? A LYS 51 ? A LYS 60 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? A LEU 53 ? A LEU 62 ? 1_555 82.1 ? 32 O ? A LYS 51 ? A LYS 60 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? A VAL 56 ? A VAL 65 ? 1_555 87.7 ? 33 O ? A LEU 53 ? A LEU 62 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? A VAL 56 ? A VAL 65 ? 1_555 90.4 ? 34 O ? A LYS 51 ? A LYS 60 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 172.3 ? 35 O ? A LEU 53 ? A LEU 62 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 96.9 ? 36 O ? A VAL 56 ? A VAL 65 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 84.7 ? 37 O ? A LYS 51 ? A LYS 60 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? O HOH . ? D HOH 55 ? 1_555 93.0 ? 38 O ? A LEU 53 ? A LEU 62 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? O HOH . ? D HOH 55 ? 1_555 169.4 ? 39 O ? A VAL 56 ? A VAL 65 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? O HOH . ? D HOH 55 ? 1_555 80.1 ? 40 OP1 ? D DC 3 ? D DC 3 ? 1_555 NA ? I NA . ? A NA 350 ? 1_555 O ? O HOH . ? D HOH 55 ? 1_555 86.8 ? 41 O ? A THR 92 ? A THR 101 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? A VAL 94 ? A VAL 103 ? 1_555 93.2 ? 42 O ? A THR 92 ? A THR 101 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? A ILE 97 ? A ILE 106 ? 1_555 97.4 ? 43 O ? A VAL 94 ? A VAL 103 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? A ILE 97 ? A ILE 106 ? 1_555 88.8 ? 44 O ? A THR 92 ? A THR 101 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? L HOH . ? A HOH 510 ? 1_555 79.9 ? 45 O ? A VAL 94 ? A VAL 103 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? L HOH . ? A HOH 510 ? 1_555 86.1 ? 46 O ? A ILE 97 ? A ILE 106 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? L HOH . ? A HOH 510 ? 1_555 174.1 ? 47 O ? A THR 92 ? A THR 101 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 165.6 ? 48 O ? A VAL 94 ? A VAL 103 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 93.4 ? 49 O ? A ILE 97 ? A ILE 106 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 95.5 ? 50 O ? L HOH . ? A HOH 510 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 87.8 ? 51 O ? A THR 92 ? A THR 101 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? N HOH . ? P HOH 56 ? 1_555 76.3 ? 52 O ? A VAL 94 ? A VAL 103 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? N HOH . ? P HOH 56 ? 1_555 166.9 ? 53 O ? A ILE 97 ? A ILE 106 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? N HOH . ? P HOH 56 ? 1_555 100.2 ? 54 O ? L HOH . ? A HOH 510 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? N HOH . ? P HOH 56 ? 1_555 84.4 ? 55 OP1 ? C DG 9 ? P DG 9 ? 1_555 NA ? H NA . ? A NA 349 ? 1_555 O ? N HOH . ? P HOH 56 ? 1_555 95.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.value' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.521 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.086 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 32 ? ? -115.78 74.89 2 1 ASP A 170 ? ? -172.73 118.04 3 1 CYS A 178 ? ? -110.41 -129.17 4 1 ASP A 190 ? ? -162.65 -169.35 5 1 THR A 205 ? ? -117.66 68.34 6 1 LYS A 206 ? ? -55.00 4.43 7 1 LYS A 209 ? ? 55.88 13.68 8 1 ASP A 246 ? ? 71.00 -22.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 248 ? CG ? A LYS 239 CG 2 1 Y 1 A LYS 248 ? CD ? A LYS 239 CD 3 1 Y 1 A LYS 248 ? CE ? A LYS 239 CE 4 1 Y 1 A LYS 248 ? NZ ? A LYS 239 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4BD PA P N S 1 4BD O1A O N N 2 4BD O2A O N N 3 4BD C3A C N N 4 4BD F1A F N N 5 4BD F2A F N N 6 4BD "O5'" O N N 7 4BD PB P N S 8 4BD O1B O N N 9 4BD O2B O N N 10 4BD O3B O N N 11 4BD PG P N N 12 4BD O1G O N N 13 4BD O2G O N N 14 4BD O3G O N N 15 4BD "C5'" C N N 16 4BD "C4'" C N R 17 4BD "O4'" O N N 18 4BD "C1'" C N R 19 4BD N1 N N N 20 4BD C6 C N N 21 4BD C2 C N N 22 4BD O2 O N N 23 4BD N3 N N N 24 4BD C4 C N N 25 4BD O4 O N N 26 4BD C5 C N N 27 4BD C5M C N N 28 4BD "C2'" C N N 29 4BD "C3'" C N S 30 4BD "O3'" O N N 31 4BD HO1A H N N 32 4BD HO2B H N N 33 4BD HO1G H N N 34 4BD HO3G H N N 35 4BD "H5'" H N N 36 4BD "H5'A" H N N 37 4BD "H4'" H N N 38 4BD "H1'" H N N 39 4BD H6 H N N 40 4BD HN3 H N N 41 4BD H5M H N N 42 4BD H5MA H N N 43 4BD H5MB H N N 44 4BD "H2'" H N N 45 4BD "H2'A" H N N 46 4BD "H3'" H N N 47 4BD "HO3'" H N N 48 ALA N N N N 49 ALA CA C N S 50 ALA C C N N 51 ALA O O N N 52 ALA CB C N N 53 ALA OXT O N N 54 ALA H H N N 55 ALA H2 H N N 56 ALA HA H N N 57 ALA HB1 H N N 58 ALA HB2 H N N 59 ALA HB3 H N N 60 ALA HXT H N N 61 ARG N N N N 62 ARG CA C N S 63 ARG C C N N 64 ARG O O N N 65 ARG CB C N N 66 ARG CG C N N 67 ARG CD C N N 68 ARG NE N N N 69 ARG CZ C N N 70 ARG NH1 N N N 71 ARG NH2 N N N 72 ARG OXT O N N 73 ARG H H N N 74 ARG H2 H N N 75 ARG HA H N N 76 ARG HB2 H N N 77 ARG HB3 H N N 78 ARG HG2 H N N 79 ARG HG3 H N N 80 ARG HD2 H N N 81 ARG HD3 H N N 82 ARG HE H N N 83 ARG HH11 H N N 84 ARG HH12 H N N 85 ARG HH21 H N N 86 ARG HH22 H N N 87 ARG HXT H N N 88 ASN N N N N 89 ASN CA C N S 90 ASN C C N N 91 ASN O O N N 92 ASN CB C N N 93 ASN CG C N N 94 ASN OD1 O N N 95 ASN ND2 N N N 96 ASN OXT O N N 97 ASN H H N N 98 ASN H2 H N N 99 ASN HA H N N 100 ASN HB2 H N N 101 ASN HB3 H N N 102 ASN HD21 H N N 103 ASN HD22 H N N 104 ASN HXT H N N 105 ASP N N N N 106 ASP CA C N S 107 ASP C C N N 108 ASP O O N N 109 ASP CB C N N 110 ASP CG C N N 111 ASP OD1 O N N 112 ASP OD2 O N N 113 ASP OXT O N N 114 ASP H H N N 115 ASP H2 H N N 116 ASP HA H N N 117 ASP HB2 H N N 118 ASP HB3 H N N 119 ASP HD2 H N N 120 ASP HXT H N N 121 CL CL CL N N 122 CYS N N N N 123 CYS CA C N R 124 CYS C C N N 125 CYS O O N N 126 CYS CB C N N 127 CYS SG S N N 128 CYS OXT O N N 129 CYS H H N N 130 CYS H2 H N N 131 CYS HA H N N 132 CYS HB2 H N N 133 CYS HB3 H N N 134 CYS HG H N N 135 CYS HXT H N N 136 DA OP3 O N N 137 DA P P N N 138 DA OP1 O N N 139 DA OP2 O N N 140 DA "O5'" O N N 141 DA "C5'" C N N 142 DA "C4'" C N R 143 DA "O4'" O N N 144 DA "C3'" C N S 145 DA "O3'" O N N 146 DA "C2'" C N N 147 DA "C1'" C N R 148 DA N9 N Y N 149 DA C8 C Y N 150 DA N7 N Y N 151 DA C5 C Y N 152 DA C6 C Y N 153 DA N6 N N N 154 DA N1 N Y N 155 DA C2 C Y N 156 DA N3 N Y N 157 DA C4 C Y N 158 DA HOP3 H N N 159 DA HOP2 H N N 160 DA "H5'" H N N 161 DA "H5''" H N N 162 DA "H4'" H N N 163 DA "H3'" H N N 164 DA "HO3'" H N N 165 DA "H2'" H N N 166 DA "H2''" H N N 167 DA "H1'" H N N 168 DA H8 H N N 169 DA H61 H N N 170 DA H62 H N N 171 DA H2 H N N 172 DC OP3 O N N 173 DC P P N N 174 DC OP1 O N N 175 DC OP2 O N N 176 DC "O5'" O N N 177 DC "C5'" C N N 178 DC "C4'" C N R 179 DC "O4'" O N N 180 DC "C3'" C N S 181 DC "O3'" O N N 182 DC "C2'" C N N 183 DC "C1'" C N R 184 DC N1 N N N 185 DC C2 C N N 186 DC O2 O N N 187 DC N3 N N N 188 DC C4 C N N 189 DC N4 N N N 190 DC C5 C N N 191 DC C6 C N N 192 DC HOP3 H N N 193 DC HOP2 H N N 194 DC "H5'" H N N 195 DC "H5''" H N N 196 DC "H4'" H N N 197 DC "H3'" H N N 198 DC "HO3'" H N N 199 DC "H2'" H N N 200 DC "H2''" H N N 201 DC "H1'" H N N 202 DC H41 H N N 203 DC H42 H N N 204 DC H5 H N N 205 DC H6 H N N 206 DG OP3 O N N 207 DG P P N N 208 DG OP1 O N N 209 DG OP2 O N N 210 DG "O5'" O N N 211 DG "C5'" C N N 212 DG "C4'" C N R 213 DG "O4'" O N N 214 DG "C3'" C N S 215 DG "O3'" O N N 216 DG "C2'" C N N 217 DG "C1'" C N R 218 DG N9 N Y N 219 DG C8 C Y N 220 DG N7 N Y N 221 DG C5 C Y N 222 DG C6 C N N 223 DG O6 O N N 224 DG N1 N N N 225 DG C2 C N N 226 DG N2 N N N 227 DG N3 N N N 228 DG C4 C Y N 229 DG HOP3 H N N 230 DG HOP2 H N N 231 DG "H5'" H N N 232 DG "H5''" H N N 233 DG "H4'" H N N 234 DG "H3'" H N N 235 DG "HO3'" H N N 236 DG "H2'" H N N 237 DG "H2''" H N N 238 DG "H1'" H N N 239 DG H8 H N N 240 DG H1 H N N 241 DG H21 H N N 242 DG H22 H N N 243 DT OP3 O N N 244 DT P P N N 245 DT OP1 O N N 246 DT OP2 O N N 247 DT "O5'" O N N 248 DT "C5'" C N N 249 DT "C4'" C N R 250 DT "O4'" O N N 251 DT "C3'" C N S 252 DT "O3'" O N N 253 DT "C2'" C N N 254 DT "C1'" C N R 255 DT N1 N N N 256 DT C2 C N N 257 DT O2 O N N 258 DT N3 N N N 259 DT C4 C N N 260 DT O4 O N N 261 DT C5 C N N 262 DT C7 C N N 263 DT C6 C N N 264 DT HOP3 H N N 265 DT HOP2 H N N 266 DT "H5'" H N N 267 DT "H5''" H N N 268 DT "H4'" H N N 269 DT "H3'" H N N 270 DT "HO3'" H N N 271 DT "H2'" H N N 272 DT "H2''" H N N 273 DT "H1'" H N N 274 DT H3 H N N 275 DT H71 H N N 276 DT H72 H N N 277 DT H73 H N N 278 DT H6 H N N 279 GLN N N N N 280 GLN CA C N S 281 GLN C C N N 282 GLN O O N N 283 GLN CB C N N 284 GLN CG C N N 285 GLN CD C N N 286 GLN OE1 O N N 287 GLN NE2 N N N 288 GLN OXT O N N 289 GLN H H N N 290 GLN H2 H N N 291 GLN HA H N N 292 GLN HB2 H N N 293 GLN HB3 H N N 294 GLN HG2 H N N 295 GLN HG3 H N N 296 GLN HE21 H N N 297 GLN HE22 H N N 298 GLN HXT H N N 299 GLU N N N N 300 GLU CA C N S 301 GLU C C N N 302 GLU O O N N 303 GLU CB C N N 304 GLU CG C N N 305 GLU CD C N N 306 GLU OE1 O N N 307 GLU OE2 O N N 308 GLU OXT O N N 309 GLU H H N N 310 GLU H2 H N N 311 GLU HA H N N 312 GLU HB2 H N N 313 GLU HB3 H N N 314 GLU HG2 H N N 315 GLU HG3 H N N 316 GLU HE2 H N N 317 GLU HXT H N N 318 GLY N N N N 319 GLY CA C N N 320 GLY C C N N 321 GLY O O N N 322 GLY OXT O N N 323 GLY H H N N 324 GLY H2 H N N 325 GLY HA2 H N N 326 GLY HA3 H N N 327 GLY HXT H N N 328 HIS N N N N 329 HIS CA C N S 330 HIS C C N N 331 HIS O O N N 332 HIS CB C N N 333 HIS CG C Y N 334 HIS ND1 N Y N 335 HIS CD2 C Y N 336 HIS CE1 C Y N 337 HIS NE2 N Y N 338 HIS OXT O N N 339 HIS H H N N 340 HIS H2 H N N 341 HIS HA H N N 342 HIS HB2 H N N 343 HIS HB3 H N N 344 HIS HD1 H N N 345 HIS HD2 H N N 346 HIS HE1 H N N 347 HIS HE2 H N N 348 HIS HXT H N N 349 HOH O O N N 350 HOH H1 H N N 351 HOH H2 H N N 352 ILE N N N N 353 ILE CA C N S 354 ILE C C N N 355 ILE O O N N 356 ILE CB C N S 357 ILE CG1 C N N 358 ILE CG2 C N N 359 ILE CD1 C N N 360 ILE OXT O N N 361 ILE H H N N 362 ILE H2 H N N 363 ILE HA H N N 364 ILE HB H N N 365 ILE HG12 H N N 366 ILE HG13 H N N 367 ILE HG21 H N N 368 ILE HG22 H N N 369 ILE HG23 H N N 370 ILE HD11 H N N 371 ILE HD12 H N N 372 ILE HD13 H N N 373 ILE HXT H N N 374 LEU N N N N 375 LEU CA C N S 376 LEU C C N N 377 LEU O O N N 378 LEU CB C N N 379 LEU CG C N N 380 LEU CD1 C N N 381 LEU CD2 C N N 382 LEU OXT O N N 383 LEU H H N N 384 LEU H2 H N N 385 LEU HA H N N 386 LEU HB2 H N N 387 LEU HB3 H N N 388 LEU HG H N N 389 LEU HD11 H N N 390 LEU HD12 H N N 391 LEU HD13 H N N 392 LEU HD21 H N N 393 LEU HD22 H N N 394 LEU HD23 H N N 395 LEU HXT H N N 396 LYS N N N N 397 LYS CA C N S 398 LYS C C N N 399 LYS O O N N 400 LYS CB C N N 401 LYS CG C N N 402 LYS CD C N N 403 LYS CE C N N 404 LYS NZ N N N 405 LYS OXT O N N 406 LYS H H N N 407 LYS H2 H N N 408 LYS HA H N N 409 LYS HB2 H N N 410 LYS HB3 H N N 411 LYS HG2 H N N 412 LYS HG3 H N N 413 LYS HD2 H N N 414 LYS HD3 H N N 415 LYS HE2 H N N 416 LYS HE3 H N N 417 LYS HZ1 H N N 418 LYS HZ2 H N N 419 LYS HZ3 H N N 420 LYS HXT H N N 421 MET N N N N 422 MET CA C N S 423 MET C C N N 424 MET O O N N 425 MET CB C N N 426 MET CG C N N 427 MET SD S N N 428 MET CE C N N 429 MET OXT O N N 430 MET H H N N 431 MET H2 H N N 432 MET HA H N N 433 MET HB2 H N N 434 MET HB3 H N N 435 MET HG2 H N N 436 MET HG3 H N N 437 MET HE1 H N N 438 MET HE2 H N N 439 MET HE3 H N N 440 MET HXT H N N 441 MG MG MG N N 442 NA NA NA N N 443 PHE N N N N 444 PHE CA C N S 445 PHE C C N N 446 PHE O O N N 447 PHE CB C N N 448 PHE CG C Y N 449 PHE CD1 C Y N 450 PHE CD2 C Y N 451 PHE CE1 C Y N 452 PHE CE2 C Y N 453 PHE CZ C Y N 454 PHE OXT O N N 455 PHE H H N N 456 PHE H2 H N N 457 PHE HA H N N 458 PHE HB2 H N N 459 PHE HB3 H N N 460 PHE HD1 H N N 461 PHE HD2 H N N 462 PHE HE1 H N N 463 PHE HE2 H N N 464 PHE HZ H N N 465 PHE HXT H N N 466 PRO N N N N 467 PRO CA C N S 468 PRO C C N N 469 PRO O O N N 470 PRO CB C N N 471 PRO CG C N N 472 PRO CD C N N 473 PRO OXT O N N 474 PRO H H N N 475 PRO HA H N N 476 PRO HB2 H N N 477 PRO HB3 H N N 478 PRO HG2 H N N 479 PRO HG3 H N N 480 PRO HD2 H N N 481 PRO HD3 H N N 482 PRO HXT H N N 483 SER N N N N 484 SER CA C N S 485 SER C C N N 486 SER O O N N 487 SER CB C N N 488 SER OG O N N 489 SER OXT O N N 490 SER H H N N 491 SER H2 H N N 492 SER HA H N N 493 SER HB2 H N N 494 SER HB3 H N N 495 SER HG H N N 496 SER HXT H N N 497 THR N N N N 498 THR CA C N S 499 THR C C N N 500 THR O O N N 501 THR CB C N R 502 THR OG1 O N N 503 THR CG2 C N N 504 THR OXT O N N 505 THR H H N N 506 THR H2 H N N 507 THR HA H N N 508 THR HB H N N 509 THR HG1 H N N 510 THR HG21 H N N 511 THR HG22 H N N 512 THR HG23 H N N 513 THR HXT H N N 514 TRP N N N N 515 TRP CA C N S 516 TRP C C N N 517 TRP O O N N 518 TRP CB C N N 519 TRP CG C Y N 520 TRP CD1 C Y N 521 TRP CD2 C Y N 522 TRP NE1 N Y N 523 TRP CE2 C Y N 524 TRP CE3 C Y N 525 TRP CZ2 C Y N 526 TRP CZ3 C Y N 527 TRP CH2 C Y N 528 TRP OXT O N N 529 TRP H H N N 530 TRP H2 H N N 531 TRP HA H N N 532 TRP HB2 H N N 533 TRP HB3 H N N 534 TRP HD1 H N N 535 TRP HE1 H N N 536 TRP HE3 H N N 537 TRP HZ2 H N N 538 TRP HZ3 H N N 539 TRP HH2 H N N 540 TRP HXT H N N 541 TYR N N N N 542 TYR CA C N S 543 TYR C C N N 544 TYR O O N N 545 TYR CB C N N 546 TYR CG C Y N 547 TYR CD1 C Y N 548 TYR CD2 C Y N 549 TYR CE1 C Y N 550 TYR CE2 C Y N 551 TYR CZ C Y N 552 TYR OH O N N 553 TYR OXT O N N 554 TYR H H N N 555 TYR H2 H N N 556 TYR HA H N N 557 TYR HB2 H N N 558 TYR HB3 H N N 559 TYR HD1 H N N 560 TYR HD2 H N N 561 TYR HE1 H N N 562 TYR HE2 H N N 563 TYR HH H N N 564 TYR HXT H N N 565 VAL N N N N 566 VAL CA C N S 567 VAL C C N N 568 VAL O O N N 569 VAL CB C N N 570 VAL CG1 C N N 571 VAL CG2 C N N 572 VAL OXT O N N 573 VAL H H N N 574 VAL H2 H N N 575 VAL HA H N N 576 VAL HB H N N 577 VAL HG11 H N N 578 VAL HG12 H N N 579 VAL HG13 H N N 580 VAL HG21 H N N 581 VAL HG22 H N N 582 VAL HG23 H N N 583 VAL HXT H N N 584 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4BD "O5'" PA sing N N 1 4BD C3A PA sing N N 2 4BD PA O2A doub N N 3 4BD PA O1A sing N N 4 4BD O1A HO1A sing N N 5 4BD F1A C3A sing N N 6 4BD PB C3A sing N N 7 4BD C3A F2A sing N N 8 4BD "C5'" "O5'" sing N N 9 4BD O1B PB doub N N 10 4BD PB O2B sing N N 11 4BD PB O3B sing N N 12 4BD O2B HO2B sing N N 13 4BD O3B PG sing N N 14 4BD PG O2G doub N N 15 4BD PG O1G sing N N 16 4BD PG O3G sing N N 17 4BD O1G HO1G sing N N 18 4BD O3G HO3G sing N N 19 4BD "C4'" "C5'" sing N N 20 4BD "C5'" "H5'" sing N N 21 4BD "C5'" "H5'A" sing N N 22 4BD "C3'" "C4'" sing N N 23 4BD "O4'" "C4'" sing N N 24 4BD "C4'" "H4'" sing N N 25 4BD "C1'" "O4'" sing N N 26 4BD "C2'" "C1'" sing N N 27 4BD "C1'" N1 sing N N 28 4BD "C1'" "H1'" sing N N 29 4BD C2 N1 sing N N 30 4BD N1 C6 sing N N 31 4BD C6 C5 doub N N 32 4BD C6 H6 sing N N 33 4BD O2 C2 doub N N 34 4BD C2 N3 sing N N 35 4BD N3 C4 sing N N 36 4BD N3 HN3 sing N N 37 4BD C4 O4 doub N N 38 4BD C4 C5 sing N N 39 4BD C5 C5M sing N N 40 4BD C5M H5M sing N N 41 4BD C5M H5MA sing N N 42 4BD C5M H5MB sing N N 43 4BD "C2'" "C3'" sing N N 44 4BD "C2'" "H2'" sing N N 45 4BD "C2'" "H2'A" sing N N 46 4BD "O3'" "C3'" sing N N 47 4BD "C3'" "H3'" sing N N 48 4BD "O3'" "HO3'" sing N N 49 ALA N CA sing N N 50 ALA N H sing N N 51 ALA N H2 sing N N 52 ALA CA C sing N N 53 ALA CA CB sing N N 54 ALA CA HA sing N N 55 ALA C O doub N N 56 ALA C OXT sing N N 57 ALA CB HB1 sing N N 58 ALA CB HB2 sing N N 59 ALA CB HB3 sing N N 60 ALA OXT HXT sing N N 61 ARG N CA sing N N 62 ARG N H sing N N 63 ARG N H2 sing N N 64 ARG CA C sing N N 65 ARG CA CB sing N N 66 ARG CA HA sing N N 67 ARG C O doub N N 68 ARG C OXT sing N N 69 ARG CB CG sing N N 70 ARG CB HB2 sing N N 71 ARG CB HB3 sing N N 72 ARG CG CD sing N N 73 ARG CG HG2 sing N N 74 ARG CG HG3 sing N N 75 ARG CD NE sing N N 76 ARG CD HD2 sing N N 77 ARG CD HD3 sing N N 78 ARG NE CZ sing N N 79 ARG NE HE sing N N 80 ARG CZ NH1 sing N N 81 ARG CZ NH2 doub N N 82 ARG NH1 HH11 sing N N 83 ARG NH1 HH12 sing N N 84 ARG NH2 HH21 sing N N 85 ARG NH2 HH22 sing N N 86 ARG OXT HXT sing N N 87 ASN N CA sing N N 88 ASN N H sing N N 89 ASN N H2 sing N N 90 ASN CA C sing N N 91 ASN CA CB sing N N 92 ASN CA HA sing N N 93 ASN C O doub N N 94 ASN C OXT sing N N 95 ASN CB CG sing N N 96 ASN CB HB2 sing N N 97 ASN CB HB3 sing N N 98 ASN CG OD1 doub N N 99 ASN CG ND2 sing N N 100 ASN ND2 HD21 sing N N 101 ASN ND2 HD22 sing N N 102 ASN OXT HXT sing N N 103 ASP N CA sing N N 104 ASP N H sing N N 105 ASP N H2 sing N N 106 ASP CA C sing N N 107 ASP CA CB sing N N 108 ASP CA HA sing N N 109 ASP C O doub N N 110 ASP C OXT sing N N 111 ASP CB CG sing N N 112 ASP CB HB2 sing N N 113 ASP CB HB3 sing N N 114 ASP CG OD1 doub N N 115 ASP CG OD2 sing N N 116 ASP OD2 HD2 sing N N 117 ASP OXT HXT sing N N 118 CYS N CA sing N N 119 CYS N H sing N N 120 CYS N H2 sing N N 121 CYS CA C sing N N 122 CYS CA CB sing N N 123 CYS CA HA sing N N 124 CYS C O doub N N 125 CYS C OXT sing N N 126 CYS CB SG sing N N 127 CYS CB HB2 sing N N 128 CYS CB HB3 sing N N 129 CYS SG HG sing N N 130 CYS OXT HXT sing N N 131 DA OP3 P sing N N 132 DA OP3 HOP3 sing N N 133 DA P OP1 doub N N 134 DA P OP2 sing N N 135 DA P "O5'" sing N N 136 DA OP2 HOP2 sing N N 137 DA "O5'" "C5'" sing N N 138 DA "C5'" "C4'" sing N N 139 DA "C5'" "H5'" sing N N 140 DA "C5'" "H5''" sing N N 141 DA "C4'" "O4'" sing N N 142 DA "C4'" "C3'" sing N N 143 DA "C4'" "H4'" sing N N 144 DA "O4'" "C1'" sing N N 145 DA "C3'" "O3'" sing N N 146 DA "C3'" "C2'" sing N N 147 DA "C3'" "H3'" sing N N 148 DA "O3'" "HO3'" sing N N 149 DA "C2'" "C1'" sing N N 150 DA "C2'" "H2'" sing N N 151 DA "C2'" "H2''" sing N N 152 DA "C1'" N9 sing N N 153 DA "C1'" "H1'" sing N N 154 DA N9 C8 sing Y N 155 DA N9 C4 sing Y N 156 DA C8 N7 doub Y N 157 DA C8 H8 sing N N 158 DA N7 C5 sing Y N 159 DA C5 C6 sing Y N 160 DA C5 C4 doub Y N 161 DA C6 N6 sing N N 162 DA C6 N1 doub Y N 163 DA N6 H61 sing N N 164 DA N6 H62 sing N N 165 DA N1 C2 sing Y N 166 DA C2 N3 doub Y N 167 DA C2 H2 sing N N 168 DA N3 C4 sing Y N 169 DC OP3 P sing N N 170 DC OP3 HOP3 sing N N 171 DC P OP1 doub N N 172 DC P OP2 sing N N 173 DC P "O5'" sing N N 174 DC OP2 HOP2 sing N N 175 DC "O5'" "C5'" sing N N 176 DC "C5'" "C4'" sing N N 177 DC "C5'" "H5'" sing N N 178 DC "C5'" "H5''" sing N N 179 DC "C4'" "O4'" sing N N 180 DC "C4'" "C3'" sing N N 181 DC "C4'" "H4'" sing N N 182 DC "O4'" "C1'" sing N N 183 DC "C3'" "O3'" sing N N 184 DC "C3'" "C2'" sing N N 185 DC "C3'" "H3'" sing N N 186 DC "O3'" "HO3'" sing N N 187 DC "C2'" "C1'" sing N N 188 DC "C2'" "H2'" sing N N 189 DC "C2'" "H2''" sing N N 190 DC "C1'" N1 sing N N 191 DC "C1'" "H1'" sing N N 192 DC N1 C2 sing N N 193 DC N1 C6 sing N N 194 DC C2 O2 doub N N 195 DC C2 N3 sing N N 196 DC N3 C4 doub N N 197 DC C4 N4 sing N N 198 DC C4 C5 sing N N 199 DC N4 H41 sing N N 200 DC N4 H42 sing N N 201 DC C5 C6 doub N N 202 DC C5 H5 sing N N 203 DC C6 H6 sing N N 204 DG OP3 P sing N N 205 DG OP3 HOP3 sing N N 206 DG P OP1 doub N N 207 DG P OP2 sing N N 208 DG P "O5'" sing N N 209 DG OP2 HOP2 sing N N 210 DG "O5'" "C5'" sing N N 211 DG "C5'" "C4'" sing N N 212 DG "C5'" "H5'" sing N N 213 DG "C5'" "H5''" sing N N 214 DG "C4'" "O4'" sing N N 215 DG "C4'" "C3'" sing N N 216 DG "C4'" "H4'" sing N N 217 DG "O4'" "C1'" sing N N 218 DG "C3'" "O3'" sing N N 219 DG "C3'" "C2'" sing N N 220 DG "C3'" "H3'" sing N N 221 DG "O3'" "HO3'" sing N N 222 DG "C2'" "C1'" sing N N 223 DG "C2'" "H2'" sing N N 224 DG "C2'" "H2''" sing N N 225 DG "C1'" N9 sing N N 226 DG "C1'" "H1'" sing N N 227 DG N9 C8 sing Y N 228 DG N9 C4 sing Y N 229 DG C8 N7 doub Y N 230 DG C8 H8 sing N N 231 DG N7 C5 sing Y N 232 DG C5 C6 sing N N 233 DG C5 C4 doub Y N 234 DG C6 O6 doub N N 235 DG C6 N1 sing N N 236 DG N1 C2 sing N N 237 DG N1 H1 sing N N 238 DG C2 N2 sing N N 239 DG C2 N3 doub N N 240 DG N2 H21 sing N N 241 DG N2 H22 sing N N 242 DG N3 C4 sing N N 243 DT OP3 P sing N N 244 DT OP3 HOP3 sing N N 245 DT P OP1 doub N N 246 DT P OP2 sing N N 247 DT P "O5'" sing N N 248 DT OP2 HOP2 sing N N 249 DT "O5'" "C5'" sing N N 250 DT "C5'" "C4'" sing N N 251 DT "C5'" "H5'" sing N N 252 DT "C5'" "H5''" sing N N 253 DT "C4'" "O4'" sing N N 254 DT "C4'" "C3'" sing N N 255 DT "C4'" "H4'" sing N N 256 DT "O4'" "C1'" sing N N 257 DT "C3'" "O3'" sing N N 258 DT "C3'" "C2'" sing N N 259 DT "C3'" "H3'" sing N N 260 DT "O3'" "HO3'" sing N N 261 DT "C2'" "C1'" sing N N 262 DT "C2'" "H2'" sing N N 263 DT "C2'" "H2''" sing N N 264 DT "C1'" N1 sing N N 265 DT "C1'" "H1'" sing N N 266 DT N1 C2 sing N N 267 DT N1 C6 sing N N 268 DT C2 O2 doub N N 269 DT C2 N3 sing N N 270 DT N3 C4 sing N N 271 DT N3 H3 sing N N 272 DT C4 O4 doub N N 273 DT C4 C5 sing N N 274 DT C5 C7 sing N N 275 DT C5 C6 doub N N 276 DT C7 H71 sing N N 277 DT C7 H72 sing N N 278 DT C7 H73 sing N N 279 DT C6 H6 sing N N 280 GLN N CA sing N N 281 GLN N H sing N N 282 GLN N H2 sing N N 283 GLN CA C sing N N 284 GLN CA CB sing N N 285 GLN CA HA sing N N 286 GLN C O doub N N 287 GLN C OXT sing N N 288 GLN CB CG sing N N 289 GLN CB HB2 sing N N 290 GLN CB HB3 sing N N 291 GLN CG CD sing N N 292 GLN CG HG2 sing N N 293 GLN CG HG3 sing N N 294 GLN CD OE1 doub N N 295 GLN CD NE2 sing N N 296 GLN NE2 HE21 sing N N 297 GLN NE2 HE22 sing N N 298 GLN OXT HXT sing N N 299 GLU N CA sing N N 300 GLU N H sing N N 301 GLU N H2 sing N N 302 GLU CA C sing N N 303 GLU CA CB sing N N 304 GLU CA HA sing N N 305 GLU C O doub N N 306 GLU C OXT sing N N 307 GLU CB CG sing N N 308 GLU CB HB2 sing N N 309 GLU CB HB3 sing N N 310 GLU CG CD sing N N 311 GLU CG HG2 sing N N 312 GLU CG HG3 sing N N 313 GLU CD OE1 doub N N 314 GLU CD OE2 sing N N 315 GLU OE2 HE2 sing N N 316 GLU OXT HXT sing N N 317 GLY N CA sing N N 318 GLY N H sing N N 319 GLY N H2 sing N N 320 GLY CA C sing N N 321 GLY CA HA2 sing N N 322 GLY CA HA3 sing N N 323 GLY C O doub N N 324 GLY C OXT sing N N 325 GLY OXT HXT sing N N 326 HIS N CA sing N N 327 HIS N H sing N N 328 HIS N H2 sing N N 329 HIS CA C sing N N 330 HIS CA CB sing N N 331 HIS CA HA sing N N 332 HIS C O doub N N 333 HIS C OXT sing N N 334 HIS CB CG sing N N 335 HIS CB HB2 sing N N 336 HIS CB HB3 sing N N 337 HIS CG ND1 sing Y N 338 HIS CG CD2 doub Y N 339 HIS ND1 CE1 doub Y N 340 HIS ND1 HD1 sing N N 341 HIS CD2 NE2 sing Y N 342 HIS CD2 HD2 sing N N 343 HIS CE1 NE2 sing Y N 344 HIS CE1 HE1 sing N N 345 HIS NE2 HE2 sing N N 346 HIS OXT HXT sing N N 347 HOH O H1 sing N N 348 HOH O H2 sing N N 349 ILE N CA sing N N 350 ILE N H sing N N 351 ILE N H2 sing N N 352 ILE CA C sing N N 353 ILE CA CB sing N N 354 ILE CA HA sing N N 355 ILE C O doub N N 356 ILE C OXT sing N N 357 ILE CB CG1 sing N N 358 ILE CB CG2 sing N N 359 ILE CB HB sing N N 360 ILE CG1 CD1 sing N N 361 ILE CG1 HG12 sing N N 362 ILE CG1 HG13 sing N N 363 ILE CG2 HG21 sing N N 364 ILE CG2 HG22 sing N N 365 ILE CG2 HG23 sing N N 366 ILE CD1 HD11 sing N N 367 ILE CD1 HD12 sing N N 368 ILE CD1 HD13 sing N N 369 ILE OXT HXT sing N N 370 LEU N CA sing N N 371 LEU N H sing N N 372 LEU N H2 sing N N 373 LEU CA C sing N N 374 LEU CA CB sing N N 375 LEU CA HA sing N N 376 LEU C O doub N N 377 LEU C OXT sing N N 378 LEU CB CG sing N N 379 LEU CB HB2 sing N N 380 LEU CB HB3 sing N N 381 LEU CG CD1 sing N N 382 LEU CG CD2 sing N N 383 LEU CG HG sing N N 384 LEU CD1 HD11 sing N N 385 LEU CD1 HD12 sing N N 386 LEU CD1 HD13 sing N N 387 LEU CD2 HD21 sing N N 388 LEU CD2 HD22 sing N N 389 LEU CD2 HD23 sing N N 390 LEU OXT HXT sing N N 391 LYS N CA sing N N 392 LYS N H sing N N 393 LYS N H2 sing N N 394 LYS CA C sing N N 395 LYS CA CB sing N N 396 LYS CA HA sing N N 397 LYS C O doub N N 398 LYS C OXT sing N N 399 LYS CB CG sing N N 400 LYS CB HB2 sing N N 401 LYS CB HB3 sing N N 402 LYS CG CD sing N N 403 LYS CG HG2 sing N N 404 LYS CG HG3 sing N N 405 LYS CD CE sing N N 406 LYS CD HD2 sing N N 407 LYS CD HD3 sing N N 408 LYS CE NZ sing N N 409 LYS CE HE2 sing N N 410 LYS CE HE3 sing N N 411 LYS NZ HZ1 sing N N 412 LYS NZ HZ2 sing N N 413 LYS NZ HZ3 sing N N 414 LYS OXT HXT sing N N 415 MET N CA sing N N 416 MET N H sing N N 417 MET N H2 sing N N 418 MET CA C sing N N 419 MET CA CB sing N N 420 MET CA HA sing N N 421 MET C O doub N N 422 MET C OXT sing N N 423 MET CB CG sing N N 424 MET CB HB2 sing N N 425 MET CB HB3 sing N N 426 MET CG SD sing N N 427 MET CG HG2 sing N N 428 MET CG HG3 sing N N 429 MET SD CE sing N N 430 MET CE HE1 sing N N 431 MET CE HE2 sing N N 432 MET CE HE3 sing N N 433 MET OXT HXT sing N N 434 PHE N CA sing N N 435 PHE N H sing N N 436 PHE N H2 sing N N 437 PHE CA C sing N N 438 PHE CA CB sing N N 439 PHE CA HA sing N N 440 PHE C O doub N N 441 PHE C OXT sing N N 442 PHE CB CG sing N N 443 PHE CB HB2 sing N N 444 PHE CB HB3 sing N N 445 PHE CG CD1 doub Y N 446 PHE CG CD2 sing Y N 447 PHE CD1 CE1 sing Y N 448 PHE CD1 HD1 sing N N 449 PHE CD2 CE2 doub Y N 450 PHE CD2 HD2 sing N N 451 PHE CE1 CZ doub Y N 452 PHE CE1 HE1 sing N N 453 PHE CE2 CZ sing Y N 454 PHE CE2 HE2 sing N N 455 PHE CZ HZ sing N N 456 PHE OXT HXT sing N N 457 PRO N CA sing N N 458 PRO N CD sing N N 459 PRO N H sing N N 460 PRO CA C sing N N 461 PRO CA CB sing N N 462 PRO CA HA sing N N 463 PRO C O doub N N 464 PRO C OXT sing N N 465 PRO CB CG sing N N 466 PRO CB HB2 sing N N 467 PRO CB HB3 sing N N 468 PRO CG CD sing N N 469 PRO CG HG2 sing N N 470 PRO CG HG3 sing N N 471 PRO CD HD2 sing N N 472 PRO CD HD3 sing N N 473 PRO OXT HXT sing N N 474 SER N CA sing N N 475 SER N H sing N N 476 SER N H2 sing N N 477 SER CA C sing N N 478 SER CA CB sing N N 479 SER CA HA sing N N 480 SER C O doub N N 481 SER C OXT sing N N 482 SER CB OG sing N N 483 SER CB HB2 sing N N 484 SER CB HB3 sing N N 485 SER OG HG sing N N 486 SER OXT HXT sing N N 487 THR N CA sing N N 488 THR N H sing N N 489 THR N H2 sing N N 490 THR CA C sing N N 491 THR CA CB sing N N 492 THR CA HA sing N N 493 THR C O doub N N 494 THR C OXT sing N N 495 THR CB OG1 sing N N 496 THR CB CG2 sing N N 497 THR CB HB sing N N 498 THR OG1 HG1 sing N N 499 THR CG2 HG21 sing N N 500 THR CG2 HG22 sing N N 501 THR CG2 HG23 sing N N 502 THR OXT HXT sing N N 503 TRP N CA sing N N 504 TRP N H sing N N 505 TRP N H2 sing N N 506 TRP CA C sing N N 507 TRP CA CB sing N N 508 TRP CA HA sing N N 509 TRP C O doub N N 510 TRP C OXT sing N N 511 TRP CB CG sing N N 512 TRP CB HB2 sing N N 513 TRP CB HB3 sing N N 514 TRP CG CD1 doub Y N 515 TRP CG CD2 sing Y N 516 TRP CD1 NE1 sing Y N 517 TRP CD1 HD1 sing N N 518 TRP CD2 CE2 doub Y N 519 TRP CD2 CE3 sing Y N 520 TRP NE1 CE2 sing Y N 521 TRP NE1 HE1 sing N N 522 TRP CE2 CZ2 sing Y N 523 TRP CE3 CZ3 doub Y N 524 TRP CE3 HE3 sing N N 525 TRP CZ2 CH2 doub Y N 526 TRP CZ2 HZ2 sing N N 527 TRP CZ3 CH2 sing Y N 528 TRP CZ3 HZ3 sing N N 529 TRP CH2 HH2 sing N N 530 TRP OXT HXT sing N N 531 TYR N CA sing N N 532 TYR N H sing N N 533 TYR N H2 sing N N 534 TYR CA C sing N N 535 TYR CA CB sing N N 536 TYR CA HA sing N N 537 TYR C O doub N N 538 TYR C OXT sing N N 539 TYR CB CG sing N N 540 TYR CB HB2 sing N N 541 TYR CB HB3 sing N N 542 TYR CG CD1 doub Y N 543 TYR CG CD2 sing Y N 544 TYR CD1 CE1 sing Y N 545 TYR CD1 HD1 sing N N 546 TYR CD2 CE2 doub Y N 547 TYR CD2 HD2 sing N N 548 TYR CE1 CZ doub Y N 549 TYR CE1 HE1 sing N N 550 TYR CE2 CZ sing Y N 551 TYR CE2 HE2 sing N N 552 TYR CZ OH sing N N 553 TYR OH HH sing N N 554 TYR OXT HXT sing N N 555 VAL N CA sing N N 556 VAL N H sing N N 557 VAL N H2 sing N N 558 VAL CA C sing N N 559 VAL CA CB sing N N 560 VAL CA HA sing N N 561 VAL C O doub N N 562 VAL C OXT sing N N 563 VAL CB CG1 sing N N 564 VAL CB CG2 sing N N 565 VAL CB HB sing N N 566 VAL CG1 HG11 sing N N 567 VAL CG1 HG12 sing N N 568 VAL CG1 HG13 sing N N 569 VAL CG2 HG21 sing N N 570 VAL CG2 HG22 sing N N 571 VAL CG2 HG23 sing N N 572 VAL OXT HXT sing N N 573 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GDX 'double helix' 3GDX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 D DG 5 1_555 0.135 -0.176 0.220 -13.477 -7.938 -3.701 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 B DC 2 1_555 D DG 4 1_555 0.667 -0.280 0.069 -1.058 -9.491 1.194 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 B DG 3 1_555 D DC 3 1_555 -0.357 -0.137 0.183 1.442 -21.805 6.571 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 B DA 4 1_555 D DT 2 1_555 0.042 -0.096 0.086 3.959 -10.529 -1.864 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 B DC 5 1_555 D DG 1 1_555 -0.020 -0.017 -0.645 16.935 0.500 -1.339 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 B DG 7 1_555 C DC 10 1_555 -0.435 -0.124 0.498 13.250 -3.054 3.050 6 T_DG7:DC10_P T 7 ? P 10 ? 19 1 1 B DC 8 1_555 C DG 9 1_555 0.240 -0.154 -0.676 18.764 -6.428 2.475 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 B DG 9 1_555 C DC 8 1_555 -0.347 -0.151 -0.181 -1.914 -0.790 0.207 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 B DC 10 1_555 C DG 7 1_555 0.363 -0.217 -0.039 1.669 -4.454 -1.616 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 B DA 11 1_555 C DT 6 1_555 0.204 -0.039 0.226 1.270 -13.822 2.777 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 B DT 12 1_555 C DA 5 1_555 0.251 -0.153 -0.038 5.023 -11.320 0.336 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 B DC 13 1_555 C DG 4 1_555 -0.088 -0.209 -0.092 -2.216 -9.206 -1.291 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 B DA 14 1_555 C DT 3 1_555 -0.067 -0.146 -0.083 -2.436 -8.487 -4.101 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 B DG 15 1_555 C DC 2 1_555 -0.291 -0.178 0.378 6.825 -9.608 0.486 14 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 B DC 16 1_555 C DG 1 1_555 0.528 -0.324 0.423 8.970 -12.614 -0.319 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 D DG 5 1_555 B DC 2 1_555 D DG 4 1_555 -0.252 0.299 3.020 2.818 7.930 32.645 -0.687 0.862 2.977 13.823 -4.911 33.683 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 B DC 2 1_555 D DG 4 1_555 B DG 3 1_555 D DC 3 1_555 0.138 1.646 3.443 -3.222 3.637 33.566 2.193 -0.794 3.568 6.256 5.543 33.905 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 B DG 3 1_555 D DC 3 1_555 B DA 4 1_555 D DT 2 1_555 -0.178 0.033 3.218 -0.619 -1.702 36.755 0.280 0.200 3.216 -2.698 0.981 36.798 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 B DA 4 1_555 D DT 2 1_555 B DC 5 1_555 D DG 1 1_555 0.785 -0.405 2.970 6.215 5.718 25.380 -2.251 -0.205 2.917 12.579 -13.671 26.727 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 B DG 7 1_555 C DC 10 1_555 B DC 8 1_555 C DG 9 1_555 0.505 -0.472 3.251 7.665 4.403 34.668 -1.407 0.286 3.205 7.244 -12.611 35.744 5 TT_DG7DC8:DG9DC10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 B DC 8 1_555 C DG 9 1_555 B DG 9 1_555 C DC 8 1_555 -1.238 -0.294 3.846 -6.173 8.261 36.474 -1.725 0.958 3.843 12.885 9.628 37.856 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 B DG 9 1_555 C DC 8 1_555 B DC 10 1_555 C DG 7 1_555 -0.668 -0.463 3.289 -1.223 3.784 33.459 -1.416 0.954 3.241 6.543 2.114 33.688 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 B DC 10 1_555 C DG 7 1_555 B DA 11 1_555 C DT 6 1_555 -0.086 -0.177 3.225 -2.411 6.757 37.031 -1.133 -0.174 3.145 10.518 3.753 37.695 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 B DA 11 1_555 C DT 6 1_555 B DT 12 1_555 C DA 5 1_555 0.090 -0.756 3.216 0.927 -0.018 29.731 -1.470 0.015 3.218 -0.035 -1.807 29.745 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 B DT 12 1_555 C DA 5 1_555 B DC 13 1_555 C DG 4 1_555 0.166 -0.197 3.307 1.777 2.370 35.843 -0.661 -0.014 3.292 3.842 -2.881 35.961 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 B DC 13 1_555 C DG 4 1_555 B DA 14 1_555 C DT 3 1_555 -0.427 0.108 3.298 0.801 10.589 34.537 -1.345 0.805 3.183 17.334 -1.311 36.085 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 B DA 14 1_555 C DT 3 1_555 B DG 15 1_555 C DC 2 1_555 0.399 -0.129 3.049 -4.573 5.961 31.066 -1.229 -1.489 2.889 10.931 8.384 31.940 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 B DG 15 1_555 C DC 2 1_555 B DC 16 1_555 C DG 1 1_555 0.355 -0.718 3.130 -1.173 3.408 39.579 -1.431 -0.651 3.049 5.021 1.729 39.736 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 "5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]thymidine" 4BD 6 'MAGNESIUM ION' MG 7 'SODIUM ION' NA 8 'CHLORIDE ION' CL 9 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FMS _pdbx_initial_refinement_model.details 'PDB entry 2FMS' #