HEADER    TRANSFERASE/DNA                         24-FEB-09   3GDX              
TITLE     DNA POLYMERASE BETA WITH A GAPPED DND SUBSTRATE AND DTMP(CF2)PP       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 2.7.7.7, 4.2.99.-;                                               
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3';  
COMPND   8 CHAIN: T;                                                            
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MOL_ID: 3;                                                           
COMPND  11 MOLECULE: 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3';                    
COMPND  12 CHAIN: P;                                                            
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 MOL_ID: 4;                                                           
COMPND  15 MOLECULE: 5'-D(P*GP*TP*CP*GP*G)-3';                                  
COMPND  16 CHAIN: D;                                                            
COMPND  17 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLB;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 MOL_ID: 3;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 MOL_ID: 4;                                                           
SOURCE  13 SYNTHETIC: YES                                                       
KEYWDS    NUCLOETIDYL TRANSFERASE, DNA POLYMERASE, DNA DAMAGE, DNA REPAIR, DNA  
KEYWDS   2 REPLICATION, DNA SYNTHESIS, DNA-BINDING, DNA-DIRECTED DNA            
KEYWDS   3 POLYMERASE, LYASE, MAGNESIUM, METAL-BINDING, NUCLEOTIDYLTRANSFERASE, 
KEYWDS   4 NUCLEUS, POLYMORPHISM, SODIUM, TRANSFERASE, TRANSFERASE-DNA COMPLEX  
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.H.WILSON,V.K.BATRA,L.C.PEDERSEN                                     
REVDAT   2   06-SEP-23 3GDX    1       REMARK LINK                              
REVDAT   1   05-MAY-09 3GDX    0                                                
JRNL        AUTH   T.G.UPTON,B.A.KASHEMIROV,C.E.MCKENNA,M.F.GOODMAN,            
JRNL        AUTH 2 G.K.PRAKASH,R.KULTYSHEV,V.K.BATRA,D.D.SHOCK,L.C.PEDERSEN,    
JRNL        AUTH 3 W.A.BEARD,S.H.WILSON                                         
JRNL        TITL   ALPHA,BETA-DIFLUOROMETHYLENE DEOXYNUCLEOSIDE                 
JRNL        TITL 2 5'-TRIPHOSPHATES: A CONVENIENT SYNTHESIS OF USEFUL PROBES    
JRNL        TITL 3 FOR DNA POLYMERASE BETA STRUCTURE AND FUNCTION               
JRNL        REF    ORG.LETT.                     V.  11  1883 2009              
JRNL        REFN                   ISSN 1523-7060                               
JRNL        PMID   19351147                                                     
JRNL        DOI    10.1021/OL701755K                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.20 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.58                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 333638.110                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 74.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 15889                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.208                           
REMARK   3   FREE R VALUE                     : 0.266                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.800                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1559                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.007                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.20                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.34                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 75.30                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2359                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2810                       
REMARK   3   BIN FREE R VALUE                    : 0.3450                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 10.30                        
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 271                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.021                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2609                                    
REMARK   3   NUCLEIC ACID ATOMS       : 631                                     
REMARK   3   HETEROGEN ATOMS          : 37                                      
REMARK   3   SOLVENT ATOMS            : 277                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 17.50                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 29.80                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 2.09000                                              
REMARK   3    B22 (A**2) : -1.14000                                             
REMARK   3    B33 (A**2) : -0.94000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 5.36000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.27                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.29                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.37                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.38                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.100                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 24.00                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.010                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.340 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.140 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 1.920 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 2.890 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.32                                                 
REMARK   3   BSOL        : 34.13                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : 4BD.PARAM                                      
REMARK   3  PARAMETER FILE  2  : NULL                                           
REMARK   3  PARAMETER FILE  3  : NULL                                           
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : DTF.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : DNTP.TOP                                       
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3GDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000051739.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 19-APR-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007 HF             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : VIRAMAX                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU SATURN 92                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18597                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.200                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 86.4                               
REMARK 200  DATA REDUNDANCY                : 2.300                              
REMARK 200  R MERGE                    (I) : 0.09800                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 9.2000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.28                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 82.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.43800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.280                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 2FMS                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.20                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE,PH 8.0, SODIUM          
REMARK 280  ACETATE 350 MM, PEG2000 MONOMETHYL ETHER 20%, VAPOR DIFFUSION,      
REMARK 280  SITTING DROP, TEMPERATURE 291K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.85000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19900 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 248    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.086                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  32       74.89   -115.78                                   
REMARK 500    ASP A 170      118.04   -172.73                                   
REMARK 500    CYS A 178     -129.17   -110.41                                   
REMARK 500    ASP A 190     -169.35   -162.65                                   
REMARK 500    THR A 205       68.34   -117.66                                   
REMARK 500    LYS A 206        4.43    -55.00                                   
REMARK 500    LYS A 209       13.68     55.88                                   
REMARK 500    ASP A 246      -22.23     71.00                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 347  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH A   1   O                                                      
REMARK 620 2 ASP A 190   OD1  84.1                                              
REMARK 620 3 ASP A 192   OD2  86.5 108.1                                        
REMARK 620 4 4BD A 346   O1A 162.6 112.9  84.5                                  
REMARK 620 5 4BD A 346   O2B  78.8 160.8  79.7  85.0                            
REMARK 620 6 4BD A 346   O3G  91.2  87.2 164.2  93.5  84.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 348  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH A   2   O                                                      
REMARK 620 2 ASP A 190   OD2  81.3                                              
REMARK 620 3 ASP A 192   OD1 165.8  88.8                                        
REMARK 620 4 ASP A 256   OD2  93.0  92.9  97.5                                  
REMARK 620 5 4BD A 346   O1A  78.5  92.0  91.9 169.5                            
REMARK 620 6  DC P  10   O3'  89.9 169.2 101.0  81.4  92.3                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 350  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LYS A  60   O                                                      
REMARK 620 2 LEU A  62   O    82.1                                              
REMARK 620 3 VAL A  65   O    87.7  90.4                                        
REMARK 620 4  DC D   3   OP1 172.3  96.9  84.7                                  
REMARK 620 5 HOH D  55   O    93.0 169.4  80.1  86.8                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 349  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 101   O                                                      
REMARK 620 2 VAL A 103   O    93.2                                              
REMARK 620 3 ILE A 106   O    97.4  88.8                                        
REMARK 620 4 HOH A 510   O    79.9  86.1 174.1                                  
REMARK 620 5  DG P   9   OP1 165.6  93.4  95.5  87.8                            
REMARK 620 6 HOH P  56   O    76.3 166.9 100.2  84.4  95.2                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4BD A 346                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 347                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 348                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 349                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 350                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 351                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 352                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2FMS   RELATED DB: PDB                                   
DBREF  3GDX A   10   335  UNP    P06746   DPOLB_HUMAN     10    335             
DBREF  3GDX T    1    16  PDB    3GDX     3GDX             1     16             
DBREF  3GDX P    1    10  PDB    3GDX     3GDX             1     10             
DBREF  3GDX D    1     5  PDB    3GDX     3GDX             1      5             
SEQRES   1 A  326  THR LEU ASN GLY GLY ILE THR ASP MET LEU THR GLU LEU          
SEQRES   2 A  326  ALA ASN PHE GLU LYS ASN VAL SER GLN ALA ILE HIS LYS          
SEQRES   3 A  326  TYR ASN ALA TYR ARG LYS ALA ALA SER VAL ILE ALA LYS          
SEQRES   4 A  326  TYR PRO HIS LYS ILE LYS SER GLY ALA GLU ALA LYS LYS          
SEQRES   5 A  326  LEU PRO GLY VAL GLY THR LYS ILE ALA GLU LYS ILE ASP          
SEQRES   6 A  326  GLU PHE LEU ALA THR GLY LYS LEU ARG LYS LEU GLU LYS          
SEQRES   7 A  326  ILE ARG GLN ASP ASP THR SER SER SER ILE ASN PHE LEU          
SEQRES   8 A  326  THR ARG VAL SER GLY ILE GLY PRO SER ALA ALA ARG LYS          
SEQRES   9 A  326  PHE VAL ASP GLU GLY ILE LYS THR LEU GLU ASP LEU ARG          
SEQRES  10 A  326  LYS ASN GLU ASP LYS LEU ASN HIS HIS GLN ARG ILE GLY          
SEQRES  11 A  326  LEU LYS TYR PHE GLY ASP PHE GLU LYS ARG ILE PRO ARG          
SEQRES  12 A  326  GLU GLU MET LEU GLN MET GLN ASP ILE VAL LEU ASN GLU          
SEQRES  13 A  326  VAL LYS LYS VAL ASP SER GLU TYR ILE ALA THR VAL CYS          
SEQRES  14 A  326  GLY SER PHE ARG ARG GLY ALA GLU SER SER GLY ASP MET          
SEQRES  15 A  326  ASP VAL LEU LEU THR HIS PRO SER PHE THR SER GLU SER          
SEQRES  16 A  326  THR LYS GLN PRO LYS LEU LEU HIS GLN VAL VAL GLU GLN          
SEQRES  17 A  326  LEU GLN LYS VAL HIS PHE ILE THR ASP THR LEU SER LYS          
SEQRES  18 A  326  GLY GLU THR LYS PHE MET GLY VAL CYS GLN LEU PRO SER          
SEQRES  19 A  326  LYS ASN ASP GLU LYS GLU TYR PRO HIS ARG ARG ILE ASP          
SEQRES  20 A  326  ILE ARG LEU ILE PRO LYS ASP GLN TYR TYR CYS GLY VAL          
SEQRES  21 A  326  LEU TYR PHE THR GLY SER ASP ILE PHE ASN LYS ASN MET          
SEQRES  22 A  326  ARG ALA HIS ALA LEU GLU LYS GLY PHE THR ILE ASN GLU          
SEQRES  23 A  326  TYR THR ILE ARG PRO LEU GLY VAL THR GLY VAL ALA GLY          
SEQRES  24 A  326  GLU PRO LEU PRO VAL ASP SER GLU LYS ASP ILE PHE ASP          
SEQRES  25 A  326  TYR ILE GLN TRP LYS TYR ARG GLU PRO LYS ASP ARG SER          
SEQRES  26 A  326  GLU                                                          
SEQRES   1 T   16   DC  DC  DG  DA  DC  DA  DG  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
SEQRES   1 P   10   DG  DC  DT  DG  DA  DT  DG  DC  DG  DC                      
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
HET    4BD  A 346      31                                                       
HET     MG  A 347       1                                                       
HET     MG  A 348       1                                                       
HET     NA  A 349       1                                                       
HET     NA  A 350       1                                                       
HET     CL  A 351       1                                                       
HET     CL  A 352       1                                                       
HETNAM     4BD 5'-O-[(S)-{DIFLUORO[(S)-HYDROXY(PHOSPHONOOXY)                    
HETNAM   2 4BD  PHOSPHORYL]METHYL}(HYDROXY)PHOSPHORYL]THYMIDINE                 
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      NA SODIUM ION                                                       
HETNAM      CL CHLORIDE ION                                                     
FORMUL   5  4BD    C11 H17 F2 N2 O13 P3                                         
FORMUL   6   MG    2(MG 2+)                                                     
FORMUL   8   NA    2(NA 1+)                                                     
FORMUL  10   CL    2(CL 1-)                                                     
FORMUL  12  HOH   *277(H2 O)                                                    
HELIX    1   1 ASN A   12  VAL A   29  1                                  18    
HELIX    2   2 ALA A   32  LYS A   48  1                                  17    
HELIX    3   3 SER A   55  LYS A   61  1                                   7    
HELIX    4   4 GLY A   66  GLY A   80  1                                  15    
HELIX    5   5 LEU A   82  ASP A   91  1                                  10    
HELIX    6   6 ASP A   91  THR A  101  1                                  11    
HELIX    7   7 GLY A  107  ASP A  116  1                                  10    
HELIX    8   8 THR A  121  ASN A  128  1                                   8    
HELIX    9   9 GLU A  129  LEU A  132  5                                   4    
HELIX   10  10 ASN A  133  TYR A  142  1                                  10    
HELIX   11  11 TYR A  142  LYS A  148  1                                   7    
HELIX   12  12 ARG A  152  ASP A  170  1                                  19    
HELIX   13  13 CYS A  178  ARG A  183  1                                   6    
HELIX   14  14 LYS A  209  VAL A  221  1                                  13    
HELIX   15  15 PRO A  261  ASP A  263  5                                   3    
HELIX   16  16 GLN A  264  GLY A  274  1                                  11    
HELIX   17  17 SER A  275  LYS A  289  1                                  15    
HELIX   18  18 SER A  315  ILE A  323  1                                   9    
HELIX   19  19 GLU A  329  ARG A  333  5                                   5    
SHEET    1   A 2 ILE A 150  PRO A 151  0                                        
SHEET    2   A 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1   B 5 ILE A 174  VAL A 177  0                                        
SHEET    2   B 5 MET A 191  THR A 196 -1  O  LEU A 194   N  THR A 176           
SHEET    3   B 5 ARG A 253  LEU A 259  1  N  ARG A 258   O  LEU A 195           
SHEET    4   B 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5   B 5 ILE A 224  LYS A 230 -1  N  THR A 225   O  VAL A 238           
SHEET    1   C 2 PHE A 200  THR A 201  0                                        
SHEET    2   C 2 SER A 204  THR A 205 -1  O  SER A 204   N  THR A 201           
SHEET    1   D 2 PHE A 291  ILE A 293  0                                        
SHEET    2   D 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O   HOH A   1                MG    MG A 347     1555   1555  2.21  
LINK         O   HOH A   2                MG    MG A 348     1555   1555  2.19  
LINK         O   LYS A  60                NA    NA A 350     1555   1555  2.44  
LINK         O   LEU A  62                NA    NA A 350     1555   1555  2.45  
LINK         O   VAL A  65                NA    NA A 350     1555   1555  2.67  
LINK         O   THR A 101                NA    NA A 349     1555   1555  2.26  
LINK         O   VAL A 103                NA    NA A 349     1555   1555  2.69  
LINK         O   ILE A 106                NA    NA A 349     1555   1555  2.19  
LINK         OD1 ASP A 190                MG    MG A 347     1555   1555  1.80  
LINK         OD2 ASP A 190                MG    MG A 348     1555   1555  2.27  
LINK         OD2 ASP A 192                MG    MG A 347     1555   1555  2.11  
LINK         OD1 ASP A 192                MG    MG A 348     1555   1555  2.02  
LINK         OD2 ASP A 256                MG    MG A 348     1555   1555  2.03  
LINK         O1A 4BD A 346                MG    MG A 347     1555   1555  2.00  
LINK         O2B 4BD A 346                MG    MG A 347     1555   1555  2.20  
LINK         O3G 4BD A 346                MG    MG A 347     1555   1555  2.11  
LINK         O1A 4BD A 346                MG    MG A 348     1555   1555  2.27  
LINK        MG    MG A 348                 O3'  DC P  10     1555   1555  2.15  
LINK        NA    NA A 349                 O   HOH A 510     1555   1555  2.73  
LINK        NA    NA A 349                 OP1  DG P   9     1555   1555  2.38  
LINK        NA    NA A 349                 O   HOH P  56     1555   1555  2.22  
LINK        NA    NA A 350                 OP1  DC D   3     1555   1555  2.51  
LINK        NA    NA A 350                 O   HOH D  55     1555   1555  2.64  
CISPEP   1 GLY A  274    SER A  275          0         1.64                     
SITE     1 AC1 23 HOH A   1  HOH A   2  GLY A 179  SER A 180                    
SITE     2 AC1 23 ARG A 183  GLY A 189  ASP A 190  ASP A 192                    
SITE     3 AC1 23 TYR A 271  PHE A 272  THR A 273  GLY A 274                    
SITE     4 AC1 23 ASP A 276  ASN A 279   MG A 347   MG A 348                    
SITE     5 AC1 23 HOH A 362  HOH A 427  HOH A 448  HOH A 459                    
SITE     6 AC1 23 HOH A 488   DC P  10   DA T   6                               
SITE     1 AC2  5 HOH A   1  ASP A 190  ASP A 192  4BD A 346                    
SITE     2 AC2  5  MG A 348                                                     
SITE     1 AC3  7 HOH A   2  ASP A 190  ASP A 192  ASP A 256                    
SITE     2 AC3  7 4BD A 346   MG A 347   DC P  10                               
SITE     1 AC4  6 THR A 101  VAL A 103  ILE A 106  HOH A 510                    
SITE     2 AC4  6  DG P   9  HOH P  56                                          
SITE     1 AC5  5 LYS A  60  LEU A  62  VAL A  65   DC D   3                    
SITE     2 AC5  5 HOH D  55                                                     
SITE     1 AC6  3 ASN A 294  THR A 297  ARG A 299                               
SITE     1 AC7  4 GLN A 264  CYS A 267  VAL A 313  HOH A 450                    
CRYST1   50.500   79.700   55.300  90.00 107.90  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019802  0.000000  0.006396        0.00000                         
SCALE2      0.000000  0.012547  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019003        0.00000