data_3GE2 # _entry.id 3GE2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GE2 RCSB RCSB051744 WWPDB D_1000051744 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC89707 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GE2 _pdbx_database_status.recvd_initial_deposition_date 2009-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Zhang, R.' 2 'Joachimiak, G.' 3 'Gornicki, P.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'Crystal Structure of Putative Lipoprotein SP_0198 from Streptococcus pneumoniae' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Zhang, R.' 2 primary 'Joachimiak, G.' 3 primary 'Gornicki, P.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 3GE2 _cell.length_a 106.007 _cell.length_b 106.007 _cell.length_c 64.613 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GE2 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lipoprotein, putative' 14113.791 1 ? ? 'UNP residues 26-152' ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 5 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESD GDQKVKQVTFDSANQR(MSE)IIGDDVKIYTVNGNQIVVDD(MSE)DRDPSDQIVLTK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESD GDQKVKQVTFDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC89707 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ALA n 1 5 GLN n 1 6 GLN n 1 7 VAL n 1 8 GLN n 1 9 GLN n 1 10 PRO n 1 11 VAL n 1 12 ALA n 1 13 GLN n 1 14 GLN n 1 15 GLN n 1 16 VAL n 1 17 GLN n 1 18 GLN n 1 19 PRO n 1 20 ALA n 1 21 GLN n 1 22 GLN n 1 23 ASN n 1 24 THR n 1 25 ASN n 1 26 THR n 1 27 ALA n 1 28 ASN n 1 29 ALA n 1 30 GLY n 1 31 GLY n 1 32 ASN n 1 33 GLN n 1 34 ASN n 1 35 GLN n 1 36 ALA n 1 37 ALA n 1 38 PRO n 1 39 VAL n 1 40 GLN n 1 41 ASN n 1 42 GLN n 1 43 PRO n 1 44 VAL n 1 45 ALA n 1 46 GLN n 1 47 PRO n 1 48 THR n 1 49 ASP n 1 50 ILE n 1 51 ASP n 1 52 GLY n 1 53 THR n 1 54 TYR n 1 55 THR n 1 56 GLY n 1 57 GLN n 1 58 ASP n 1 59 ASP n 1 60 GLY n 1 61 ASP n 1 62 ARG n 1 63 ILE n 1 64 THR n 1 65 LEU n 1 66 VAL n 1 67 VAL n 1 68 THR n 1 69 GLY n 1 70 THR n 1 71 THR n 1 72 GLY n 1 73 THR n 1 74 TRP n 1 75 THR n 1 76 GLU n 1 77 LEU n 1 78 GLU n 1 79 SER n 1 80 ASP n 1 81 GLY n 1 82 ASP n 1 83 GLN n 1 84 LYS n 1 85 VAL n 1 86 LYS n 1 87 GLN n 1 88 VAL n 1 89 THR n 1 90 PHE n 1 91 ASP n 1 92 SER n 1 93 ALA n 1 94 ASN n 1 95 GLN n 1 96 ARG n 1 97 MSE n 1 98 ILE n 1 99 ILE n 1 100 GLY n 1 101 ASP n 1 102 ASP n 1 103 VAL n 1 104 LYS n 1 105 ILE n 1 106 TYR n 1 107 THR n 1 108 VAL n 1 109 ASN n 1 110 GLY n 1 111 ASN n 1 112 GLN n 1 113 ILE n 1 114 VAL n 1 115 VAL n 1 116 ASP n 1 117 ASP n 1 118 MSE n 1 119 ASP n 1 120 ARG n 1 121 ASP n 1 122 PRO n 1 123 SER n 1 124 ASP n 1 125 GLN n 1 126 ILE n 1 127 VAL n 1 128 LEU n 1 129 THR n 1 130 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TIGR4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'N-terminal MBP-fusion with TVMV protease cut-site which is cleaved in vivo and a 6-His tag with TEV protease cut site' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21magic _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5M522_STRPN _struct_ref.pdbx_db_accession A5M522 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQ KVKQVTFDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GE2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5M522 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 152 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 153 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GE2 SER A 1 ? UNP A5M522 ? ? 'EXPRESSION TAG' 24 1 1 3GE2 ASN A 2 ? UNP A5M522 ? ? 'EXPRESSION TAG' 25 2 1 3GE2 ALA A 3 ? UNP A5M522 ? ? 'EXPRESSION TAG' 26 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GE2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.71 _exptl_crystal.density_percent_sol 66.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1 M Sodium acetate trihydrate pH 4.5, 2.0 M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-02-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 3GE2 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.9 _reflns.d_resolution_high 2.20 _reflns.number_obs 11211 _reflns.number_all 11211 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.8 _reflns.B_iso_Wilson_estimate 43.59 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.24 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.782 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 537 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GE2 _refine.ls_number_reflns_obs 11161 _refine.ls_number_reflns_all 11161 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.421 _refine.ls_d_res_high 2.203 _refine.ls_percent_reflns_obs 98.89 _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_all 0.191 _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.72 _refine.ls_number_reflns_R_free 527 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.0853 _refine.aniso_B[2][2] 1.0853 _refine.aniso_B[3][3] -2.1706 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.399 _refine.solvent_model_param_bsol 74.727 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 683 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 791 _refine_hist.d_res_high 2.203 _refine_hist.d_res_low 37.421 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? f_angle_deg 1.61 ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.8 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 4 2.2030 2.4244 2578 0.2009 99.00 0.2389 . . 119 . . 2697 . 'X-RAY DIFFRACTION' 4 2.4244 2.7752 2628 0.1806 100.00 0.2201 . . 134 . . 2762 . 'X-RAY DIFFRACTION' 4 2.7752 3.4960 2651 0.1651 100.00 0.1989 . . 146 . . 2797 . 'X-RAY DIFFRACTION' 4 3.4960 37.4260 2777 0.1902 98.00 0.2234 . . 128 . . 2909 . 'X-RAY DIFFRACTION' # _struct.entry_id 3GE2 _struct.title 'Crystal structure of putative lipoprotein SP_0198 from Streptococcus pneumoniae' _struct.pdbx_descriptor 'Lipoprotein, putative' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GE2 _struct_keywords.pdbx_keywords LIPOPROTEIN _struct_keywords.text 'beta-barrel, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Lipoprotein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 121 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 125 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 144 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 148 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 96 C ? ? ? 1_555 A MSE 97 N ? ? A ARG 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.317 ? covale2 covale ? ? A MSE 97 C ? ? ? 1_555 A ILE 98 N ? ? A MSE 120 A ILE 121 1_555 ? ? ? ? ? ? ? 1.316 ? covale3 covale ? ? A ASP 117 C ? ? ? 1_555 A MSE 118 N ? ? A ASP 140 A MSE 141 1_555 ? ? ? ? ? ? ? 1.308 ? covale4 covale ? ? A MSE 118 C ? ? ? 1_555 A ASP 119 N ? ? A MSE 141 A ASP 142 1_555 ? ? ? ? ? ? ? 1.313 ? metalc1 metalc ? ? A ASN 111 OD1 ? ? ? 1_555 B K . K ? ? A ASN 134 A K 201 1_555 ? ? ? ? ? ? ? 2.946 ? metalc2 metalc ? ? B K . K ? ? ? 1_555 H HOH . O ? ? A K 201 A HOH 321 1_555 ? ? ? ? ? ? ? 2.726 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 52 ? ASP A 58 ? GLY A 75 ASP A 81 A 2 ASP A 61 ? THR A 68 ? ASP A 84 THR A 91 A 3 THR A 71 ? LEU A 77 ? THR A 94 LEU A 100 A 4 GLN A 83 ? ASP A 91 ? GLN A 106 ASP A 114 A 5 ARG A 96 ? ILE A 99 ? ARG A 119 ILE A 122 A 6 ASP A 102 ? ASN A 109 ? ASP A 125 ASN A 132 A 7 GLN A 112 ? ASP A 116 ? GLN A 135 ASP A 139 A 8 ILE A 126 ? THR A 129 ? ILE A 149 THR A 152 A 9 GLY A 52 ? ASP A 58 ? GLY A 75 ASP A 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 54 ? N TYR A 77 O LEU A 65 ? O LEU A 88 A 2 3 N THR A 64 ? N THR A 87 O THR A 75 ? O THR A 98 A 3 4 N GLY A 72 ? N GLY A 95 O VAL A 88 ? O VAL A 111 A 4 5 N ASP A 91 ? N ASP A 114 O ARG A 96 ? O ARG A 119 A 5 6 N MSE A 97 ? N MSE A 120 O LYS A 104 ? O LYS A 127 A 6 7 N ASN A 109 ? N ASN A 132 O GLN A 112 ? O GLN A 135 A 7 8 N VAL A 115 ? N VAL A 138 O ILE A 126 ? O ILE A 149 A 8 9 O THR A 129 ? O THR A 152 N THR A 55 ? N THR A 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE K A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 202' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A 203' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 204' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 205' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 110 ? GLY A 133 . ? 1_555 ? 2 AC1 4 ASN A 111 ? ASN A 134 . ? 1_555 ? 3 AC1 4 LYS A 130 ? LYS A 153 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH A 321 . ? 1_555 ? 5 AC2 3 VAL A 108 ? VAL A 131 . ? 1_555 ? 6 AC2 3 ASN A 109 ? ASN A 132 . ? 1_555 ? 7 AC2 3 GLY A 110 ? GLY A 133 . ? 1_555 ? 8 AC3 7 ASP A 102 ? ASP A 125 . ? 1_555 ? 9 AC3 7 VAL A 103 ? VAL A 126 . ? 1_555 ? 10 AC3 7 LYS A 104 ? LYS A 127 . ? 1_555 ? 11 AC3 7 ASP A 117 ? ASP A 140 . ? 1_555 ? 12 AC3 7 MSE A 118 ? MSE A 141 . ? 1_555 ? 13 AC3 7 ASP A 119 ? ASP A 142 . ? 1_555 ? 14 AC3 7 HOH H . ? HOH A 367 . ? 1_555 ? 15 AC4 6 GLU A 76 ? GLU A 99 . ? 1_555 ? 16 AC4 6 LYS A 104 ? LYS A 127 . ? 1_555 ? 17 AC4 6 ILE A 126 ? ILE A 149 . ? 1_555 ? 18 AC4 6 HOH H . ? HOH A 348 . ? 1_555 ? 19 AC4 6 HOH H . ? HOH A 378 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH A 382 . ? 1_555 ? 21 AC5 4 GLU A 76 ? GLU A 99 . ? 1_555 ? 22 AC5 4 LYS A 84 ? LYS A 107 . ? 1_555 ? 23 AC5 4 LYS A 86 ? LYS A 109 . ? 1_555 ? 24 AC5 4 HOH H . ? HOH A 382 . ? 1_555 ? 25 AC6 2 GLN A 112 ? GLN A 135 . ? 1_555 ? 26 AC6 2 GLN A 125 ? GLN A 148 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GE2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GE2 _atom_sites.fract_transf_matrix[1][1] 0.009433 _atom_sites.fract_transf_matrix[1][2] 0.005446 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010893 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015477 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL K N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 24 ? ? ? A . n A 1 2 ASN 2 25 ? ? ? A . n A 1 3 ALA 3 26 ? ? ? A . n A 1 4 ALA 4 27 ? ? ? A . n A 1 5 GLN 5 28 ? ? ? A . n A 1 6 GLN 6 29 ? ? ? A . n A 1 7 VAL 7 30 ? ? ? A . n A 1 8 GLN 8 31 ? ? ? A . n A 1 9 GLN 9 32 ? ? ? A . n A 1 10 PRO 10 33 ? ? ? A . n A 1 11 VAL 11 34 ? ? ? A . n A 1 12 ALA 12 35 ? ? ? A . n A 1 13 GLN 13 36 ? ? ? A . n A 1 14 GLN 14 37 ? ? ? A . n A 1 15 GLN 15 38 ? ? ? A . n A 1 16 VAL 16 39 ? ? ? A . n A 1 17 GLN 17 40 ? ? ? A . n A 1 18 GLN 18 41 ? ? ? A . n A 1 19 PRO 19 42 ? ? ? A . n A 1 20 ALA 20 43 ? ? ? A . n A 1 21 GLN 21 44 ? ? ? A . n A 1 22 GLN 22 45 ? ? ? A . n A 1 23 ASN 23 46 ? ? ? A . n A 1 24 THR 24 47 ? ? ? A . n A 1 25 ASN 25 48 ? ? ? A . n A 1 26 THR 26 49 ? ? ? A . n A 1 27 ALA 27 50 ? ? ? A . n A 1 28 ASN 28 51 ? ? ? A . n A 1 29 ALA 29 52 ? ? ? A . n A 1 30 GLY 30 53 ? ? ? A . n A 1 31 GLY 31 54 ? ? ? A . n A 1 32 ASN 32 55 ? ? ? A . n A 1 33 GLN 33 56 ? ? ? A . n A 1 34 ASN 34 57 ? ? ? A . n A 1 35 GLN 35 58 ? ? ? A . n A 1 36 ALA 36 59 ? ? ? A . n A 1 37 ALA 37 60 ? ? ? A . n A 1 38 PRO 38 61 ? ? ? A . n A 1 39 VAL 39 62 ? ? ? A . n A 1 40 GLN 40 63 ? ? ? A . n A 1 41 ASN 41 64 ? ? ? A . n A 1 42 GLN 42 65 65 GLN GLN A . n A 1 43 PRO 43 66 66 PRO PRO A . n A 1 44 VAL 44 67 67 VAL VAL A . n A 1 45 ALA 45 68 68 ALA ALA A . n A 1 46 GLN 46 69 69 GLN GLN A . n A 1 47 PRO 47 70 70 PRO PRO A . n A 1 48 THR 48 71 71 THR THR A . n A 1 49 ASP 49 72 72 ASP ASP A . n A 1 50 ILE 50 73 73 ILE ILE A . n A 1 51 ASP 51 74 74 ASP ASP A . n A 1 52 GLY 52 75 75 GLY GLY A . n A 1 53 THR 53 76 76 THR THR A . n A 1 54 TYR 54 77 77 TYR TYR A . n A 1 55 THR 55 78 78 THR THR A . n A 1 56 GLY 56 79 79 GLY GLY A . n A 1 57 GLN 57 80 80 GLN GLN A . n A 1 58 ASP 58 81 81 ASP ASP A . n A 1 59 ASP 59 82 82 ASP ASP A . n A 1 60 GLY 60 83 83 GLY GLY A . n A 1 61 ASP 61 84 84 ASP ASP A . n A 1 62 ARG 62 85 85 ARG ARG A . n A 1 63 ILE 63 86 86 ILE ILE A . n A 1 64 THR 64 87 87 THR THR A . n A 1 65 LEU 65 88 88 LEU LEU A . n A 1 66 VAL 66 89 89 VAL VAL A . n A 1 67 VAL 67 90 90 VAL VAL A . n A 1 68 THR 68 91 91 THR THR A . n A 1 69 GLY 69 92 92 GLY GLY A . n A 1 70 THR 70 93 93 THR THR A . n A 1 71 THR 71 94 94 THR THR A . n A 1 72 GLY 72 95 95 GLY GLY A . n A 1 73 THR 73 96 96 THR THR A . n A 1 74 TRP 74 97 97 TRP TRP A . n A 1 75 THR 75 98 98 THR THR A . n A 1 76 GLU 76 99 99 GLU GLU A . n A 1 77 LEU 77 100 100 LEU LEU A . n A 1 78 GLU 78 101 101 GLU GLU A . n A 1 79 SER 79 102 102 SER SER A . n A 1 80 ASP 80 103 103 ASP ASP A . n A 1 81 GLY 81 104 104 GLY GLY A . n A 1 82 ASP 82 105 105 ASP ASP A . n A 1 83 GLN 83 106 106 GLN GLN A . n A 1 84 LYS 84 107 107 LYS LYS A . n A 1 85 VAL 85 108 108 VAL VAL A . n A 1 86 LYS 86 109 109 LYS LYS A . n A 1 87 GLN 87 110 110 GLN GLN A . n A 1 88 VAL 88 111 111 VAL VAL A . n A 1 89 THR 89 112 112 THR THR A . n A 1 90 PHE 90 113 113 PHE PHE A . n A 1 91 ASP 91 114 114 ASP ASP A . n A 1 92 SER 92 115 115 SER SER A . n A 1 93 ALA 93 116 116 ALA ALA A . n A 1 94 ASN 94 117 117 ASN ASN A . n A 1 95 GLN 95 118 118 GLN GLN A . n A 1 96 ARG 96 119 119 ARG ARG A . n A 1 97 MSE 97 120 120 MSE MSE A . n A 1 98 ILE 98 121 121 ILE ILE A . n A 1 99 ILE 99 122 122 ILE ILE A . n A 1 100 GLY 100 123 123 GLY GLY A . n A 1 101 ASP 101 124 124 ASP ASP A . n A 1 102 ASP 102 125 125 ASP ASP A . n A 1 103 VAL 103 126 126 VAL VAL A . n A 1 104 LYS 104 127 127 LYS LYS A . n A 1 105 ILE 105 128 128 ILE ILE A . n A 1 106 TYR 106 129 129 TYR TYR A . n A 1 107 THR 107 130 130 THR THR A . n A 1 108 VAL 108 131 131 VAL VAL A . n A 1 109 ASN 109 132 132 ASN ASN A . n A 1 110 GLY 110 133 133 GLY GLY A . n A 1 111 ASN 111 134 134 ASN ASN A . n A 1 112 GLN 112 135 135 GLN GLN A . n A 1 113 ILE 113 136 136 ILE ILE A . n A 1 114 VAL 114 137 137 VAL VAL A . n A 1 115 VAL 115 138 138 VAL VAL A . n A 1 116 ASP 116 139 139 ASP ASP A . n A 1 117 ASP 117 140 140 ASP ASP A . n A 1 118 MSE 118 141 141 MSE MSE A . n A 1 119 ASP 119 142 142 ASP ASP A . n A 1 120 ARG 120 143 143 ARG ARG A . n A 1 121 ASP 121 144 144 ASP ASP A . n A 1 122 PRO 122 145 145 PRO PRO A . n A 1 123 SER 123 146 146 SER SER A . n A 1 124 ASP 124 147 147 ASP ASP A . n A 1 125 GLN 125 148 148 GLN GLN A . n A 1 126 ILE 126 149 149 ILE ILE A . n A 1 127 VAL 127 150 150 VAL VAL A . n A 1 128 LEU 128 151 151 LEU LEU A . n A 1 129 THR 129 152 152 THR THR A . n A 1 130 LYS 130 153 153 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 201 6 K K A . C 3 CL 1 202 5 CL CL A . D 4 GOL 1 203 1 GOL GOL A . E 4 GOL 1 204 2 GOL GOL A . F 4 GOL 1 205 3 GOL GOL A . G 4 GOL 1 206 4 GOL GOL A . H 5 HOH 1 301 1 HOH HOH A . H 5 HOH 2 302 2 HOH HOH A . H 5 HOH 3 303 3 HOH HOH A . H 5 HOH 4 304 4 HOH HOH A . H 5 HOH 5 305 5 HOH HOH A . H 5 HOH 6 306 6 HOH HOH A . H 5 HOH 7 307 7 HOH HOH A . H 5 HOH 8 308 8 HOH HOH A . H 5 HOH 9 309 9 HOH HOH A . H 5 HOH 10 310 10 HOH HOH A . H 5 HOH 11 311 11 HOH HOH A . H 5 HOH 12 312 12 HOH HOH A . H 5 HOH 13 313 13 HOH HOH A . H 5 HOH 14 314 14 HOH HOH A . H 5 HOH 15 315 15 HOH HOH A . H 5 HOH 16 316 16 HOH HOH A . H 5 HOH 17 317 17 HOH HOH A . H 5 HOH 18 318 18 HOH HOH A . H 5 HOH 19 319 19 HOH HOH A . H 5 HOH 20 320 20 HOH HOH A . H 5 HOH 21 321 21 HOH HOH A . H 5 HOH 22 322 22 HOH HOH A . H 5 HOH 23 323 23 HOH HOH A . H 5 HOH 24 324 24 HOH HOH A . H 5 HOH 25 325 25 HOH HOH A . H 5 HOH 26 326 26 HOH HOH A . H 5 HOH 27 327 27 HOH HOH A . H 5 HOH 28 328 28 HOH HOH A . H 5 HOH 29 329 29 HOH HOH A . H 5 HOH 30 330 30 HOH HOH A . H 5 HOH 31 331 31 HOH HOH A . H 5 HOH 32 332 32 HOH HOH A . H 5 HOH 33 333 33 HOH HOH A . H 5 HOH 34 334 34 HOH HOH A . H 5 HOH 35 335 35 HOH HOH A . H 5 HOH 36 336 36 HOH HOH A . H 5 HOH 37 337 37 HOH HOH A . H 5 HOH 38 338 38 HOH HOH A . H 5 HOH 39 339 39 HOH HOH A . H 5 HOH 40 340 40 HOH HOH A . H 5 HOH 41 341 41 HOH HOH A . H 5 HOH 42 342 42 HOH HOH A . H 5 HOH 43 343 43 HOH HOH A . H 5 HOH 44 344 44 HOH HOH A . H 5 HOH 45 345 45 HOH HOH A . H 5 HOH 46 346 46 HOH HOH A . H 5 HOH 47 347 47 HOH HOH A . H 5 HOH 48 348 48 HOH HOH A . H 5 HOH 49 349 49 HOH HOH A . H 5 HOH 50 350 50 HOH HOH A . H 5 HOH 51 351 51 HOH HOH A . H 5 HOH 52 352 52 HOH HOH A . H 5 HOH 53 353 53 HOH HOH A . H 5 HOH 54 354 54 HOH HOH A . H 5 HOH 55 355 55 HOH HOH A . H 5 HOH 56 356 56 HOH HOH A . H 5 HOH 57 357 57 HOH HOH A . H 5 HOH 58 358 58 HOH HOH A . H 5 HOH 59 359 59 HOH HOH A . H 5 HOH 60 360 60 HOH HOH A . H 5 HOH 61 361 61 HOH HOH A . H 5 HOH 62 362 62 HOH HOH A . H 5 HOH 63 363 63 HOH HOH A . H 5 HOH 64 364 64 HOH HOH A . H 5 HOH 65 365 65 HOH HOH A . H 5 HOH 66 366 66 HOH HOH A . H 5 HOH 67 367 67 HOH HOH A . H 5 HOH 68 368 68 HOH HOH A . H 5 HOH 69 369 69 HOH HOH A . H 5 HOH 70 370 70 HOH HOH A . H 5 HOH 71 371 71 HOH HOH A . H 5 HOH 72 372 72 HOH HOH A . H 5 HOH 73 373 73 HOH HOH A . H 5 HOH 74 374 74 HOH HOH A . H 5 HOH 75 375 75 HOH HOH A . H 5 HOH 76 376 76 HOH HOH A . H 5 HOH 77 377 77 HOH HOH A . H 5 HOH 78 378 78 HOH HOH A . H 5 HOH 79 379 79 HOH HOH A . H 5 HOH 80 380 80 HOH HOH A . H 5 HOH 81 381 81 HOH HOH A . H 5 HOH 82 382 82 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 97 A MSE 120 ? MET SELENOMETHIONINE 2 A MSE 118 A MSE 141 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1010 ? 1 MORE -7.5 ? 1 'SSA (A^2)' 9400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 43.0753333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 201 ? B K . 2 1 A CL 202 ? C CL . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OD1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id ASN _pdbx_struct_conn_angle.ptnr1_label_seq_id 111 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id ASN _pdbx_struct_conn_angle.ptnr1_auth_seq_id 134 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id K _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id K _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id K _pdbx_struct_conn_angle.ptnr2_auth_seq_id 201 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id H _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 321 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 122.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.2015 _pdbx_refine_tls.origin_y 31.4046 _pdbx_refine_tls.origin_z 32.0837 _pdbx_refine_tls.T[1][1] 0.2683 _pdbx_refine_tls.T[2][2] 0.3028 _pdbx_refine_tls.T[3][3] 0.2592 _pdbx_refine_tls.T[1][2] 0.0408 _pdbx_refine_tls.T[1][3] 0.0158 _pdbx_refine_tls.T[2][3] 0.0080 _pdbx_refine_tls.L[1][1] 0.8036 _pdbx_refine_tls.L[2][2] 1.6087 _pdbx_refine_tls.L[3][3] 1.6605 _pdbx_refine_tls.L[1][2] -0.1930 _pdbx_refine_tls.L[1][3] 0.0008 _pdbx_refine_tls.L[2][3] -0.1458 _pdbx_refine_tls.S[1][1] -0.0249 _pdbx_refine_tls.S[1][2] -0.1256 _pdbx_refine_tls.S[1][3] -0.0610 _pdbx_refine_tls.S[2][1] 0.0796 _pdbx_refine_tls.S[2][2] 0.0193 _pdbx_refine_tls.S[2][3] 0.1684 _pdbx_refine_tls.S[3][1] 0.1673 _pdbx_refine_tls.S[3][2] -0.0522 _pdbx_refine_tls.S[3][3] 0.0019 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A' _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 phasing . ? 3 SHELXCD phasing . ? 4 SHELXD phasing . ? 5 MLPHARE phasing . ? 6 DM 'model building' . ? 7 SOLVE phasing . ? 8 RESOLVE 'model building' . ? 9 PHENIX refinement . ? 10 HKL-3000 'data reduction' . ? 11 HKL-3000 'data scaling' . ? 12 DM phasing . ? 13 RESOLVE phasing . ? 14 # _pdbx_entry_details.entry_id 3GE2 _pdbx_entry_details.sequence_details ;THE PROTEIN SEQUENCE PROVIDED BY AUTHORS IS THE SEQUENCE OF THE PROTEIN USED FOR CRYSTALLIZATION. CHYMOTRYPSIN HAS BEEN INCLUDED AT 1:100 RATIO IN THE CRYSTALLIZATION. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 24 ? A SER 1 2 1 Y 1 A ASN 25 ? A ASN 2 3 1 Y 1 A ALA 26 ? A ALA 3 4 1 Y 1 A ALA 27 ? A ALA 4 5 1 Y 1 A GLN 28 ? A GLN 5 6 1 Y 1 A GLN 29 ? A GLN 6 7 1 Y 1 A VAL 30 ? A VAL 7 8 1 Y 1 A GLN 31 ? A GLN 8 9 1 Y 1 A GLN 32 ? A GLN 9 10 1 Y 1 A PRO 33 ? A PRO 10 11 1 Y 1 A VAL 34 ? A VAL 11 12 1 Y 1 A ALA 35 ? A ALA 12 13 1 Y 1 A GLN 36 ? A GLN 13 14 1 Y 1 A GLN 37 ? A GLN 14 15 1 Y 1 A GLN 38 ? A GLN 15 16 1 Y 1 A VAL 39 ? A VAL 16 17 1 Y 1 A GLN 40 ? A GLN 17 18 1 Y 1 A GLN 41 ? A GLN 18 19 1 Y 1 A PRO 42 ? A PRO 19 20 1 Y 1 A ALA 43 ? A ALA 20 21 1 Y 1 A GLN 44 ? A GLN 21 22 1 Y 1 A GLN 45 ? A GLN 22 23 1 Y 1 A ASN 46 ? A ASN 23 24 1 Y 1 A THR 47 ? A THR 24 25 1 Y 1 A ASN 48 ? A ASN 25 26 1 Y 1 A THR 49 ? A THR 26 27 1 Y 1 A ALA 50 ? A ALA 27 28 1 Y 1 A ASN 51 ? A ASN 28 29 1 Y 1 A ALA 52 ? A ALA 29 30 1 Y 1 A GLY 53 ? A GLY 30 31 1 Y 1 A GLY 54 ? A GLY 31 32 1 Y 1 A ASN 55 ? A ASN 32 33 1 Y 1 A GLN 56 ? A GLN 33 34 1 Y 1 A ASN 57 ? A ASN 34 35 1 Y 1 A GLN 58 ? A GLN 35 36 1 Y 1 A ALA 59 ? A ALA 36 37 1 Y 1 A ALA 60 ? A ALA 37 38 1 Y 1 A PRO 61 ? A PRO 38 39 1 Y 1 A VAL 62 ? A VAL 39 40 1 Y 1 A GLN 63 ? A GLN 40 41 1 Y 1 A ASN 64 ? A ASN 41 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'CHLORIDE ION' CL 4 GLYCEROL GOL 5 water HOH #