HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-FEB-09 3GEK TITLE CRYSTAL STRUCTURE OF PUTATIVE THIOESTERASE YHDA FROM LACTOCOCCUS TITLE 2 LACTIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET KR113 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOESTERASE YHDA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS; SOURCE 3 ORGANISM_TAXID: 272623; SOURCE 4 STRAIN: IL1403; SOURCE 5 GENE: L131, L131392, LL0726, YHDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS STRUCTURE GENOMICS, NESG, KR113, Q9CHK5_LACLA, LACTOCOCCUS LACTIS, KEYWDS 2 YHDA, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.P.KUZIN,M.SU,R.SEETHARAMAN,D.LEE,E.L.FOOTE,C.CICCOSANTI,H.JANJUA, AUTHOR 2 R.XIAO,R.NAIR,B.ROST,T.B.ACTON,J.K.EVERETT,G.T.MONTELIONE,J.F.HUNT, AUTHOR 3 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 22-NOV-23 3GEK 1 REMARK REVDAT 4 06-SEP-23 3GEK 1 REMARK REVDAT 3 20-OCT-21 3GEK 1 SEQADV LINK REVDAT 2 13-JUL-11 3GEK 1 VERSN REVDAT 1 17-MAR-09 3GEK 0 JRNL AUTH A.P.KUZIN,M.SU,R.SEETHARAMAN,D.LEE,E.L.FOOTE,C.CICCOSANTI, JRNL AUTH 2 H.JANJUA,R.XIAO,R.NAIR,B.ROST,T.B.ACTON,J.K.EVERETT, JRNL AUTH 3 G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL X-RAY STRUCTURE OF PUTATIVE THIOESTERASE YHDA FROM JRNL TITL 2 LACTOCOCCUS LACTIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET KR113 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3917 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.98000 REMARK 3 B22 (A**2) : 4.53000 REMARK 3 B33 (A**2) : 0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.535 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4030 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5399 ; 1.065 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 5.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;42.950 ;26.011 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;15.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 9.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1660 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2731 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2604 ; 0.541 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4020 ; 0.711 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1581 ; 0.897 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1377 ; 1.327 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 132 REMARK 3 RESIDUE RANGE : A 147 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6703 1.2202 -17.9207 REMARK 3 T TENSOR REMARK 3 T11: -0.1249 T22: -0.2335 REMARK 3 T33: -0.2768 T12: -0.0025 REMARK 3 T13: 0.0119 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.8974 L22: 1.4621 REMARK 3 L33: 1.6174 L12: -0.4912 REMARK 3 L13: 0.1675 L23: -0.6235 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.0382 S13: -0.1478 REMARK 3 S21: 0.0911 S22: 0.0216 S23: 0.0718 REMARK 3 S31: -0.0307 S32: -0.0369 S33: -0.0493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING REMARK 4 REMARK 4 3GEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1VH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 20% ETHYLENE GLYCOL, REMARK 280 0.2M CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.97400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.32850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.02800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.32850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.97400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.02800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 133 REMARK 465 LYS A 134 REMARK 465 ASN A 135 REMARK 465 SER A 136 REMARK 465 ASP A 137 REMARK 465 LYS A 138 REMARK 465 LEU A 139 REMARK 465 GLU A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 GLU B 18 REMARK 465 ASN B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 LYS B 22 REMARK 465 PHE B 23 REMARK 465 VAL B 24 REMARK 465 SER B 25 REMARK 465 LYS B 134 REMARK 465 ASN B 135 REMARK 465 SER B 136 REMARK 465 ASP B 137 REMARK 465 LYS B 138 REMARK 465 LEU B 139 REMARK 465 GLU B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 ASN C 19 REMARK 465 SER C 20 REMARK 465 ASP C 21 REMARK 465 LYS C 22 REMARK 465 PHE C 23 REMARK 465 VAL C 24 REMARK 465 SER C 25 REMARK 465 ASN C 135 REMARK 465 SER C 136 REMARK 465 ASP C 137 REMARK 465 LYS C 138 REMARK 465 LEU C 139 REMARK 465 GLU C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 GLU D 18 REMARK 465 ASN D 19 REMARK 465 SER D 20 REMARK 465 ASP D 21 REMARK 465 LYS D 22 REMARK 465 PHE D 23 REMARK 465 VAL D 24 REMARK 465 SER D 25 REMARK 465 PRO D 132 REMARK 465 GLN D 133 REMARK 465 LYS D 134 REMARK 465 ASN D 135 REMARK 465 SER D 136 REMARK 465 ASP D 137 REMARK 465 LYS D 138 REMARK 465 LEU D 139 REMARK 465 GLU D 140 REMARK 465 HIS D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 23 C VAL A 24 N 0.138 REMARK 500 SER C 69 CB SER C 69 OG 0.171 REMARK 500 SER D 69 CB SER D 69 OG -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 69 85.63 47.11 REMARK 500 SER A 69 85.13 47.78 REMARK 500 ASN A 102 74.82 -103.90 REMARK 500 ASN B 8 61.98 60.48 REMARK 500 SER D 37 -168.62 -126.17 REMARK 500 ASN D 102 73.43 -103.36 REMARK 500 ASN D 102 73.43 -101.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: KR113 RELATED DB: TARGETDB DBREF 3GEK A 1 138 UNP Q9CHK5 Q9CHK5_LACLA 1 138 DBREF 3GEK B 1 138 UNP Q9CHK5 Q9CHK5_LACLA 1 138 DBREF 3GEK C 1 138 UNP Q9CHK5 Q9CHK5_LACLA 1 138 DBREF 3GEK D 1 138 UNP Q9CHK5 Q9CHK5_LACLA 1 138 SEQADV 3GEK PHE A 23 UNP Q9CHK5 SER 23 ENGINEERED MUTATION SEQADV 3GEK GLN A 44 UNP Q9CHK5 HIS 44 ENGINEERED MUTATION SEQADV 3GEK GLY A 70 UNP Q9CHK5 SER 70 ENGINEERED MUTATION SEQADV 3GEK PHE A 75 UNP Q9CHK5 LEU 75 ENGINEERED MUTATION SEQADV 3GEK ASN A 80 UNP Q9CHK5 SER 80 ENGINEERED MUTATION SEQADV 3GEK PRO A 86 UNP Q9CHK5 SER 86 ENGINEERED MUTATION SEQADV 3GEK ARG A 96 UNP Q9CHK5 CYS 96 ENGINEERED MUTATION SEQADV 3GEK LEU A 139 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK GLU A 140 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS A 141 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS A 142 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS A 143 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS A 144 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS A 145 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS A 146 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK PHE B 23 UNP Q9CHK5 SER 23 ENGINEERED MUTATION SEQADV 3GEK GLN B 44 UNP Q9CHK5 HIS 44 ENGINEERED MUTATION SEQADV 3GEK GLY B 70 UNP Q9CHK5 SER 70 ENGINEERED MUTATION SEQADV 3GEK PHE B 75 UNP Q9CHK5 LEU 75 ENGINEERED MUTATION SEQADV 3GEK ASN B 80 UNP Q9CHK5 SER 80 ENGINEERED MUTATION SEQADV 3GEK PRO B 86 UNP Q9CHK5 SER 86 ENGINEERED MUTATION SEQADV 3GEK ARG B 96 UNP Q9CHK5 CYS 96 ENGINEERED MUTATION SEQADV 3GEK LEU B 139 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK GLU B 140 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS B 141 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS B 142 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS B 143 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS B 144 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS B 145 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS B 146 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK PHE C 23 UNP Q9CHK5 SER 23 ENGINEERED MUTATION SEQADV 3GEK GLN C 44 UNP Q9CHK5 HIS 44 ENGINEERED MUTATION SEQADV 3GEK GLY C 70 UNP Q9CHK5 SER 70 ENGINEERED MUTATION SEQADV 3GEK PHE C 75 UNP Q9CHK5 LEU 75 ENGINEERED MUTATION SEQADV 3GEK ASN C 80 UNP Q9CHK5 SER 80 ENGINEERED MUTATION SEQADV 3GEK PRO C 86 UNP Q9CHK5 SER 86 ENGINEERED MUTATION SEQADV 3GEK ARG C 96 UNP Q9CHK5 CYS 96 ENGINEERED MUTATION SEQADV 3GEK LEU C 139 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK GLU C 140 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS C 141 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS C 142 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS C 143 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS C 144 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS C 145 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS C 146 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK PHE D 23 UNP Q9CHK5 SER 23 ENGINEERED MUTATION SEQADV 3GEK GLN D 44 UNP Q9CHK5 HIS 44 ENGINEERED MUTATION SEQADV 3GEK GLY D 70 UNP Q9CHK5 SER 70 ENGINEERED MUTATION SEQADV 3GEK PHE D 75 UNP Q9CHK5 LEU 75 ENGINEERED MUTATION SEQADV 3GEK ASN D 80 UNP Q9CHK5 SER 80 ENGINEERED MUTATION SEQADV 3GEK PRO D 86 UNP Q9CHK5 SER 86 ENGINEERED MUTATION SEQADV 3GEK ARG D 96 UNP Q9CHK5 CYS 96 ENGINEERED MUTATION SEQADV 3GEK LEU D 139 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK GLU D 140 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS D 141 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS D 142 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS D 143 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS D 144 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS D 145 UNP Q9CHK5 EXPRESSION TAG SEQADV 3GEK HIS D 146 UNP Q9CHK5 EXPRESSION TAG SEQRES 1 A 146 MSE ASN MSE ILE ASP GLN LEU ASN ILE THR ASP PHE GLN SEQRES 2 A 146 VAL PHE THR ASP GLU ASN SER ASP LYS PHE VAL SER LYS SEQRES 3 A 146 ILE TYR LYS PHE SER SER LYS MSE ILE LEU SER ASP PHE SEQRES 4 A 146 HIS ALA GLN PRO GLN GLY PHE LEU ASN GLY GLY ALA SER SEQRES 5 A 146 LEU ALA LEU ALA GLU ILE THR ALA GLY MSE ALA SER ASN SEQRES 6 A 146 ALA ILE GLY SER GLY GLN TYR PHE ALA PHE GLY GLN SER SEQRES 7 A 146 ILE ASN ALA ASN HIS LEU ASN PRO LYS LYS CYS GLU GLY SEQRES 8 A 146 PHE VAL ASN ALA ARG GLY LEU LEU LEU LYS ASN GLY LYS SEQRES 9 A 146 ARG ASN HIS VAL TRP GLU ILE LYS ILE THR ASP GLU ASN SEQRES 10 A 146 GLU THR LEU ILE SER GLN ILE THR VAL VAL ASN ALA LEU SEQRES 11 A 146 VAL PRO GLN LYS ASN SER ASP LYS LEU GLU HIS HIS HIS SEQRES 12 A 146 HIS HIS HIS SEQRES 1 B 146 MSE ASN MSE ILE ASP GLN LEU ASN ILE THR ASP PHE GLN SEQRES 2 B 146 VAL PHE THR ASP GLU ASN SER ASP LYS PHE VAL SER LYS SEQRES 3 B 146 ILE TYR LYS PHE SER SER LYS MSE ILE LEU SER ASP PHE SEQRES 4 B 146 HIS ALA GLN PRO GLN GLY PHE LEU ASN GLY GLY ALA SER SEQRES 5 B 146 LEU ALA LEU ALA GLU ILE THR ALA GLY MSE ALA SER ASN SEQRES 6 B 146 ALA ILE GLY SER GLY GLN TYR PHE ALA PHE GLY GLN SER SEQRES 7 B 146 ILE ASN ALA ASN HIS LEU ASN PRO LYS LYS CYS GLU GLY SEQRES 8 B 146 PHE VAL ASN ALA ARG GLY LEU LEU LEU LYS ASN GLY LYS SEQRES 9 B 146 ARG ASN HIS VAL TRP GLU ILE LYS ILE THR ASP GLU ASN SEQRES 10 B 146 GLU THR LEU ILE SER GLN ILE THR VAL VAL ASN ALA LEU SEQRES 11 B 146 VAL PRO GLN LYS ASN SER ASP LYS LEU GLU HIS HIS HIS SEQRES 12 B 146 HIS HIS HIS SEQRES 1 C 146 MSE ASN MSE ILE ASP GLN LEU ASN ILE THR ASP PHE GLN SEQRES 2 C 146 VAL PHE THR ASP GLU ASN SER ASP LYS PHE VAL SER LYS SEQRES 3 C 146 ILE TYR LYS PHE SER SER LYS MSE ILE LEU SER ASP PHE SEQRES 4 C 146 HIS ALA GLN PRO GLN GLY PHE LEU ASN GLY GLY ALA SER SEQRES 5 C 146 LEU ALA LEU ALA GLU ILE THR ALA GLY MSE ALA SER ASN SEQRES 6 C 146 ALA ILE GLY SER GLY GLN TYR PHE ALA PHE GLY GLN SER SEQRES 7 C 146 ILE ASN ALA ASN HIS LEU ASN PRO LYS LYS CYS GLU GLY SEQRES 8 C 146 PHE VAL ASN ALA ARG GLY LEU LEU LEU LYS ASN GLY LYS SEQRES 9 C 146 ARG ASN HIS VAL TRP GLU ILE LYS ILE THR ASP GLU ASN SEQRES 10 C 146 GLU THR LEU ILE SER GLN ILE THR VAL VAL ASN ALA LEU SEQRES 11 C 146 VAL PRO GLN LYS ASN SER ASP LYS LEU GLU HIS HIS HIS SEQRES 12 C 146 HIS HIS HIS SEQRES 1 D 146 MSE ASN MSE ILE ASP GLN LEU ASN ILE THR ASP PHE GLN SEQRES 2 D 146 VAL PHE THR ASP GLU ASN SER ASP LYS PHE VAL SER LYS SEQRES 3 D 146 ILE TYR LYS PHE SER SER LYS MSE ILE LEU SER ASP PHE SEQRES 4 D 146 HIS ALA GLN PRO GLN GLY PHE LEU ASN GLY GLY ALA SER SEQRES 5 D 146 LEU ALA LEU ALA GLU ILE THR ALA GLY MSE ALA SER ASN SEQRES 6 D 146 ALA ILE GLY SER GLY GLN TYR PHE ALA PHE GLY GLN SER SEQRES 7 D 146 ILE ASN ALA ASN HIS LEU ASN PRO LYS LYS CYS GLU GLY SEQRES 8 D 146 PHE VAL ASN ALA ARG GLY LEU LEU LEU LYS ASN GLY LYS SEQRES 9 D 146 ARG ASN HIS VAL TRP GLU ILE LYS ILE THR ASP GLU ASN SEQRES 10 D 146 GLU THR LEU ILE SER GLN ILE THR VAL VAL ASN ALA LEU SEQRES 11 D 146 VAL PRO GLN LYS ASN SER ASP LYS LEU GLU HIS HIS HIS SEQRES 12 D 146 HIS HIS HIS MODRES 3GEK MSE A 1 MET SELENOMETHIONINE MODRES 3GEK MSE A 3 MET SELENOMETHIONINE MODRES 3GEK MSE A 34 MET SELENOMETHIONINE MODRES 3GEK MSE A 62 MET SELENOMETHIONINE MODRES 3GEK MSE B 1 MET SELENOMETHIONINE MODRES 3GEK MSE B 3 MET SELENOMETHIONINE MODRES 3GEK MSE B 34 MET SELENOMETHIONINE MODRES 3GEK MSE B 62 MET SELENOMETHIONINE MODRES 3GEK MSE C 1 MET SELENOMETHIONINE MODRES 3GEK MSE C 3 MET SELENOMETHIONINE MODRES 3GEK MSE C 34 MET SELENOMETHIONINE MODRES 3GEK MSE C 62 MET SELENOMETHIONINE MODRES 3GEK MSE D 1 MET SELENOMETHIONINE MODRES 3GEK MSE D 3 MET SELENOMETHIONINE MODRES 3GEK MSE D 34 MET SELENOMETHIONINE MODRES 3GEK MSE D 62 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 3 8 HET MSE A 34 8 HET MSE A 62 8 HET MSE B 1 8 HET MSE B 3 8 HET MSE B 34 8 HET MSE B 62 8 HET MSE C 1 8 HET MSE C 3 8 HET MSE C 34 8 HET MSE C 62 8 HET MSE D 1 8 HET MSE D 3 8 HET MSE D 34 8 HET MSE D 62 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *49(H2 O) HELIX 1 1 ASN A 2 LEU A 7 1 6 HELIX 2 2 GLU A 18 PHE A 23 5 6 HELIX 3 3 SER A 37 ALA A 41 5 5 HELIX 4 4 ASN A 48 SER A 69 1 22 HELIX 5 5 ASN B 2 LEU B 7 1 6 HELIX 6 6 SER B 37 ALA B 41 5 5 HELIX 7 7 ASN B 48 SER B 69 1 22 HELIX 8 8 ASN C 2 LEU C 7 1 6 HELIX 9 9 SER C 37 ALA C 41 5 5 HELIX 10 10 ASN C 48 GLY C 68 1 21 HELIX 11 11 ASN D 2 LEU D 7 1 6 HELIX 12 12 SER D 37 ALA D 41 5 5 HELIX 13 13 ASN D 48 SER D 69 1 22 SHEET 1 A12 ILE A 9 THR A 16 0 SHEET 2 A12 TYR A 28 ILE A 35 -1 O LYS A 33 N THR A 10 SHEET 3 A12 PHE A 92 ASN A 102 -1 O LEU A 99 N TYR A 28 SHEET 4 A12 ASN A 106 ASP A 115 -1 O GLU A 110 N LEU A 98 SHEET 5 A12 LEU A 120 VAL A 131 -1 O ILE A 124 N ILE A 111 SHEET 6 A12 PHE A 73 HIS A 83 -1 N PHE A 75 O ALA A 129 SHEET 7 A12 PHE D 73 HIS D 83 -1 O GLN D 77 N HIS A 83 SHEET 8 A12 LEU D 120 VAL D 131 -1 O ALA D 129 N PHE D 75 SHEET 9 A12 ASN D 106 THR D 114 -1 N ILE D 113 O SER D 122 SHEET 10 A12 PHE D 92 ASN D 102 -1 N ASN D 94 O THR D 114 SHEET 11 A12 TYR D 28 ILE D 35 -1 N PHE D 30 O GLY D 97 SHEET 12 A12 ILE D 9 THR D 16 -1 N PHE D 15 O LYS D 29 SHEET 1 B12 ILE B 9 THR B 16 0 SHEET 2 B12 TYR B 28 ILE B 35 -1 O LYS B 33 N THR B 10 SHEET 3 B12 PHE B 92 ASN B 102 -1 O VAL B 93 N MSE B 34 SHEET 4 B12 ASN B 106 THR B 114 -1 O THR B 114 N ASN B 94 SHEET 5 B12 LEU B 120 PRO B 132 -1 O ILE B 124 N ILE B 111 SHEET 6 B12 TYR B 72 HIS B 83 -1 N PHE B 75 O ALA B 129 SHEET 7 B12 TYR C 72 HIS C 83 -1 O HIS C 83 N GLN B 77 SHEET 8 B12 LEU C 120 PRO C 132 -1 O ALA C 129 N PHE C 75 SHEET 9 B12 ASN C 106 THR C 114 -1 N ILE C 111 O ILE C 124 SHEET 10 B12 PHE C 92 ASN C 102 -1 N ARG C 96 O LYS C 112 SHEET 11 B12 ILE C 27 ILE C 35 -1 N TYR C 28 O LEU C 99 SHEET 12 B12 ILE C 9 ASP C 17 -1 N PHE C 15 O LYS C 29 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C ASN A 2 N MSE A 3 1555 1555 1.32 LINK C MSE A 3 N ILE A 4 1555 1555 1.32 LINK C LYS A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N ILE A 35 1555 1555 1.32 LINK C GLY A 61 N MSE A 62 1555 1555 1.32 LINK C MSE A 62 N ALA A 63 1555 1555 1.32 LINK C MSE B 1 N ASN B 2 1555 1555 1.32 LINK C ASN B 2 N MSE B 3 1555 1555 1.32 LINK C MSE B 3 N ILE B 4 1555 1555 1.32 LINK C LYS B 33 N MSE B 34 1555 1555 1.31 LINK C MSE B 34 N ILE B 35 1555 1555 1.32 LINK C GLY B 61 N MSE B 62 1555 1555 1.32 LINK C MSE B 62 N ALA B 63 1555 1555 1.32 LINK C MSE C 1 N ASN C 2 1555 1555 1.32 LINK C ASN C 2 N MSE C 3 1555 1555 1.32 LINK C MSE C 3 N ILE C 4 1555 1555 1.32 LINK C LYS C 33 N MSE C 34 1555 1555 1.32 LINK C MSE C 34 N ILE C 35 1555 1555 1.32 LINK C GLY C 61 N MSE C 62 1555 1555 1.32 LINK C MSE C 62 N ALA C 63 1555 1555 1.32 LINK C MSE D 1 N ASN D 2 1555 1555 1.32 LINK C ASN D 2 N MSE D 3 1555 1555 1.32 LINK C MSE D 3 N ILE D 4 1555 1555 1.32 LINK C LYS D 33 N MSE D 34 1555 1555 1.32 LINK C MSE D 34 N ILE D 35 1555 1555 1.32 LINK C GLY D 61 N MSE D 62 1555 1555 1.32 LINK C MSE D 62 N ALA D 63 1555 1555 1.33 CISPEP 1 SER C 69 GLY C 70 0 -1.04 CISPEP 2 GLN C 133 LYS C 134 0 4.36 CRYST1 59.948 64.056 144.657 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006913 0.00000 HETATM 1 N MSE A 1 -6.786 -11.578 -24.986 1.00 62.64 N HETATM 2 CA MSE A 1 -6.203 -10.440 -24.221 1.00 62.66 C HETATM 3 C MSE A 1 -4.783 -10.759 -23.758 1.00 61.80 C HETATM 4 O MSE A 1 -4.583 -11.302 -22.668 1.00 61.61 O HETATM 5 CB MSE A 1 -7.091 -10.088 -23.022 1.00 63.64 C HETATM 6 CG MSE A 1 -8.146 -9.027 -23.302 1.00 65.72 C HETATM 7 SE MSE A 1 -7.453 -7.205 -23.113 1.00 73.07 SE HETATM 8 CE MSE A 1 -9.001 -6.234 -23.806 1.00 67.95 C