data_3GES # _entry.id 3GES # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GES pdb_00003ges 10.2210/pdb3ges/pdb NDB UR0189 ? ? RCSB RCSB051769 ? ? WWPDB D_1000051769 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U8D 'Guanine riboswitch bound to hypoxanthine' unspecified PDB 3G4M . unspecified PDB 3GAO . unspecified PDB 3GER . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GES _pdbx_database_status.recvd_initial_deposition_date 2009-02-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gilbert, S.D.' 1 'Batey, R.T.' 2 # _citation.id primary _citation.title 'Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 857 _citation.page_last 868 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19523903 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.04.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gilbert, S.D.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Edwards, A.L.' 3 ? primary 'Batey, R.T.' 4 ? # _cell.entry_id 3GES _cell.length_a 130.940 _cell.length_b 35.040 _cell.length_c 42.190 _cell.angle_alpha 90.00 _cell.angle_beta 89.61 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GES _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21507.768 1 ? C74U ? ? 2 non-polymer syn 6-O-methylguanine 165.153 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 8 ? ? ? ? 5 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 U n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This sequence was engineered based on the guanine riboswitch in the 5'UTR of the xpt-pbuX gene in Bacillus subtilis. ; # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GES _struct_ref.pdbx_db_accession 3GES _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GES _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3GES _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6GO non-polymer . 6-O-methylguanine 6-methoxy-7H-purin-2-amine 'C6 H7 N5 O' 165.153 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3GES _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 45.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;25% PEG 3K, 560 mM ammonium acetate, 12 mM cobalt hexammine, 10 mM K+ HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium acetate' ? ? ? 1 2 1 'PEG 3K' ? ? ? 1 3 1 'cobalt hexammine' ? ? ? 1 4 1 'K+ HEPES' ? ? ? 1 5 2 'ammonium acetate' ? ? ? 1 6 2 'PEG 3K' ? ? ? 1 7 2 'cobalt hexammine' ? ? ? 1 8 2 'K+ HEPES' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 2005-08-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3GES _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.44 _reflns.d_resolution_high 2.15 _reflns.number_obs 9699 _reflns.number_all ? _reflns.percent_possible_obs 90.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI 11.6 _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 6.67 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 91.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.357 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 6.67 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 978 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GES _refine.ls_number_reflns_obs 9692 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 790331.13 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.44 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 90.8 _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.283 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.3 _refine.ls_number_reflns_R_free 514 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.1 _refine.aniso_B[1][1] 2.47 _refine.aniso_B[2][2] -6.01 _refine.aniso_B[3][3] 3.54 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -3.92 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 53.5171 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB entry 1U8D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GES _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.47 _refine_analyze.Luzzati_sigma_a_free 0.47 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1422 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1604 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 19.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.47 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.15 _refine_ls_shell.d_res_low 2.28 _refine_ls_shell.number_reflns_R_work 1529 _refine_ls_shell.R_factor_R_work 0.321 _refine_ls_shell.percent_reflns_obs 91.3 _refine_ls_shell.R_factor_R_free 0.416 _refine_ls_shell.R_factor_R_free_error 0.043 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 92 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_revise.param dna-rna_rep_revise.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 cohex_rep.param cohex_rep.top 'X-RAY DIFFRACTION' 5 OMG.param OMG.top 'X-RAY DIFFRACTION' # _struct.entry_id 3GES _struct.title 'Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GES _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'riboswitch, mRNA, guanine, RNA-ligand complex, double helix, three-way junction, base triple, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.details 'Coordinates for a complete multimer representing the known biologically significant monomeric state of the molecule are given.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A G 32 N1 ? ? A U 22 A G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog42 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog45 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 37 A C 60 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog46 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog53 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog54 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog58 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog59 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog60 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog77 hydrog ? ? A G 48 N2 ? ? ? 1_555 A U 49 O4 ? ? A G 62 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6GO 91 ? 9 'BINDING SITE FOR RESIDUE 6GO A 91' AC2 Software A ACT 96 ? 6 'BINDING SITE FOR RESIDUE ACT A 96' AC3 Software A NCO 101 ? 7 'BINDING SITE FOR RESIDUE NCO A 101' AC4 Software A NCO 102 ? 6 'BINDING SITE FOR RESIDUE NCO A 102' AC5 Software A NCO 103 ? 7 'BINDING SITE FOR RESIDUE NCO A 103' AC6 Software A NCO 104 ? 8 'BINDING SITE FOR RESIDUE NCO A 104' AC7 Software A NCO 105 ? 4 'BINDING SITE FOR RESIDUE NCO A 105' AC8 Software A NCO 108 ? 4 'BINDING SITE FOR RESIDUE NCO A 108' AC9 Software A NCO 109 ? 3 'BINDING SITE FOR RESIDUE NCO A 109' BC1 Software A NCO 112 ? 8 'BINDING SITE FOR RESIDUE NCO A 112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 A A 7 ? A A 21 . ? 1_555 ? 2 AC1 9 U A 8 ? U A 22 . ? 1_555 ? 3 AC1 9 U A 33 ? U A 47 . ? 1_555 ? 4 AC1 9 U A 37 ? U A 51 . ? 1_555 ? 5 AC1 9 A A 38 ? A A 52 . ? 1_555 ? 6 AC1 9 A A 59 ? A A 73 . ? 1_555 ? 7 AC1 9 U A 60 ? U A 74 . ? 1_555 ? 8 AC1 9 U A 61 ? U A 75 . ? 1_555 ? 9 AC1 9 HOH L . ? HOH A 310 . ? 1_555 ? 10 AC2 6 G A 18 ? G A 32 . ? 1_555 ? 11 AC2 6 A A 19 ? A A 33 . ? 1_555 ? 12 AC2 6 G A 24 ? G A 38 . ? 1_555 ? 13 AC2 6 C A 25 ? C A 39 . ? 1_555 ? 14 AC2 6 U A 53 ? U A 67 . ? 1_555 ? 15 AC2 6 HOH L . ? HOH A 328 . ? 1_555 ? 16 AC3 7 G A 13 ? G A 27 . ? 1_555 ? 17 AC3 7 C A 14 ? C A 28 . ? 1_555 ? 18 AC3 7 G A 15 ? G A 29 . ? 4_555 ? 19 AC3 7 U A 16 ? U A 30 . ? 4_555 ? 20 AC3 7 A A 52 ? A A 66 . ? 1_555 ? 21 AC3 7 U A 53 ? U A 67 . ? 1_555 ? 22 AC3 7 HOH L . ? HOH A 410 . ? 1_555 ? 23 AC4 6 G A 24 ? G A 38 . ? 1_555 ? 24 AC4 6 C A 25 ? C A 39 . ? 1_555 ? 25 AC4 6 G A 42 ? G A 56 . ? 1_555 ? 26 AC4 6 G A 43 ? G A 57 . ? 4_546 ? 27 AC4 6 C A 44 ? C A 58 . ? 4_546 ? 28 AC4 6 HOH L . ? HOH A 333 . ? 1_555 ? 29 AC5 7 C A 25 ? C A 39 . ? 1_555 ? 30 AC5 7 G A 41 ? G A 55 . ? 1_555 ? 31 AC5 7 G A 42 ? G A 56 . ? 1_555 ? 32 AC5 7 G A 43 ? G A 57 . ? 1_555 ? 33 AC5 7 G A 54 ? G A 68 . ? 1_555 ? 34 AC5 7 U A 55 ? U A 69 . ? 1_555 ? 35 AC5 7 HOH L . ? HOH A 339 . ? 1_555 ? 36 AC6 8 U A 16 ? U A 30 . ? 1_555 ? 37 AC6 8 G A 17 ? G A 31 . ? 1_555 ? 38 AC6 8 G A 18 ? G A 32 . ? 1_555 ? 39 AC6 8 A A 51 ? A A 65 . ? 1_555 ? 40 AC6 8 A A 52 ? A A 66 . ? 1_555 ? 41 AC6 8 HOH L . ? HOH A 305 . ? 1_555 ? 42 AC6 8 HOH L . ? HOH A 312 . ? 1_555 ? 43 AC6 8 HOH L . ? HOH A 328 . ? 1_555 ? 44 AC7 4 G A 23 ? G A 37 . ? 1_555 ? 45 AC7 4 G A 24 ? G A 38 . ? 1_555 ? 46 AC7 4 HOH L . ? HOH A 365 . ? 1_555 ? 47 AC7 4 HOH L . ? HOH A 396 . ? 1_555 ? 48 AC8 4 G A 32 ? G A 46 . ? 1_555 ? 49 AC8 4 U A 33 ? U A 47 . ? 1_555 ? 50 AC8 4 C A 36 ? C A 50 . ? 1_555 ? 51 AC8 4 HOH L . ? HOH A 382 . ? 1_555 ? 52 AC9 3 A A 10 ? A A 24 . ? 1_555 ? 53 AC9 3 C A 57 ? C A 71 . ? 1_555 ? 54 AC9 3 HOH L . ? HOH A 307 . ? 1_555 ? 55 BC1 8 U A 22 ? U A 36 . ? 4_556 ? 56 BC1 8 G A 28 ? G A 42 . ? 1_565 ? 57 BC1 8 C A 29 ? C A 43 . ? 1_565 ? 58 BC1 8 G A 58 ? G A 72 . ? 1_555 ? 59 BC1 8 A A 59 ? A A 73 . ? 1_555 ? 60 BC1 8 HOH L . ? HOH A 353 . ? 1_555 ? 61 BC1 8 HOH L . ? HOH A 356 . ? 1_565 ? 62 BC1 8 HOH L . ? HOH A 413 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GES _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GES _atom_sites.fract_transf_matrix[1][1] 0.007637 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000052 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G GUA A . n A 1 2 G 2 16 16 G GUA A . n A 1 3 A 3 17 17 A ADE A . n A 1 4 C 4 18 18 C CYT A . n A 1 5 A 5 19 19 A ADE A . n A 1 6 U 6 20 20 U URI A . n A 1 7 A 7 21 21 A ADE A . n A 1 8 U 8 22 22 U URI A . n A 1 9 A 9 23 23 A ADE A . n A 1 10 A 10 24 24 A ADE A . n A 1 11 U 11 25 25 U URI A . n A 1 12 C 12 26 26 C CYT A . n A 1 13 G 13 27 27 G GUA A . n A 1 14 C 14 28 28 C CYT A . n A 1 15 G 15 29 29 G GUA A . n A 1 16 U 16 30 30 U URI A . n A 1 17 G 17 31 31 G GUA A . n A 1 18 G 18 32 32 G GUA A . n A 1 19 A 19 33 33 A ADE A . n A 1 20 U 20 34 34 U URI A . n A 1 21 A 21 35 35 A ADE A . n A 1 22 U 22 36 36 U URI A . n A 1 23 G 23 37 37 G GUA A . n A 1 24 G 24 38 38 G GUA A . n A 1 25 C 25 39 39 C CYT A . n A 1 26 A 26 40 40 A ADE A . n A 1 27 C 27 41 41 C CYT A . n A 1 28 G 28 42 42 G GUA A . n A 1 29 C 29 43 43 C CYT A . n A 1 30 A 30 44 44 A ADE A . n A 1 31 A 31 45 45 A ADE A . n A 1 32 G 32 46 46 G GUA A . n A 1 33 U 33 47 47 U URI A . n A 1 34 U 34 48 48 U URI A . n A 1 35 U 35 49 49 U URI A . n A 1 36 C 36 50 50 C CYT A . n A 1 37 U 37 51 51 U URI A . n A 1 38 A 38 52 52 A ADE A . n A 1 39 C 39 53 53 C CYT A . n A 1 40 C 40 54 54 C CYT A . n A 1 41 G 41 55 55 G GUA A . n A 1 42 G 42 56 56 G GUA A . n A 1 43 G 43 57 57 G GUA A . n A 1 44 C 44 58 58 C CYT A . n A 1 45 A 45 59 59 A ADE A . n A 1 46 C 46 60 60 C CYT A . n A 1 47 C 47 61 61 C CYT A . n A 1 48 G 48 62 62 G GUA A . n A 1 49 U 49 63 63 U URI A . n A 1 50 A 50 64 64 A ADE A . n A 1 51 A 51 65 65 A ADE A . n A 1 52 A 52 66 66 A ADE A . n A 1 53 U 53 67 67 U URI A . n A 1 54 G 54 68 68 G GUA A . n A 1 55 U 55 69 69 U URI A . n A 1 56 C 56 70 70 C CYT A . n A 1 57 C 57 71 71 C CYT A . n A 1 58 G 58 72 72 G GUA A . n A 1 59 A 59 73 73 A ADE A . n A 1 60 U 60 74 74 U URI A . n A 1 61 U 61 75 75 U URI A . n A 1 62 A 62 76 76 A ADE A . n A 1 63 U 63 77 77 U URI A . n A 1 64 G 64 78 78 G GUA A . n A 1 65 U 65 79 79 U URI A . n A 1 66 C 66 80 80 C CYT A . n A 1 67 C 67 81 81 C CYT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6GO 1 91 91 6GO 6GO A . C 3 ACT 1 96 96 ACT ACT A . D 4 NCO 1 101 101 NCO NCO A . E 4 NCO 1 102 102 NCO NCO A . F 4 NCO 1 103 103 NCO NCO A . G 4 NCO 1 104 104 NCO NCO A . H 4 NCO 1 105 105 NCO NCO A . I 4 NCO 1 108 108 NCO NCO A . J 4 NCO 1 109 109 NCO NCO A . K 4 NCO 1 112 112 NCO NCO A . L 5 HOH 1 300 300 HOH HOH A . L 5 HOH 2 301 301 HOH HOH A . L 5 HOH 3 303 303 HOH HOH A . L 5 HOH 4 304 304 HOH HOH A . L 5 HOH 5 305 305 HOH HOH A . L 5 HOH 6 306 306 HOH HOH A . L 5 HOH 7 307 307 HOH HOH A . L 5 HOH 8 308 308 HOH HOH A . L 5 HOH 9 309 309 HOH HOH A . L 5 HOH 10 310 310 HOH HOH A . L 5 HOH 11 311 311 HOH HOH A . L 5 HOH 12 312 312 HOH HOH A . L 5 HOH 13 313 313 HOH HOH A . L 5 HOH 14 314 314 HOH HOH A . L 5 HOH 15 315 315 HOH HOH A . L 5 HOH 16 316 316 HOH HOH A . L 5 HOH 17 317 317 HOH HOH A . L 5 HOH 18 318 318 HOH HOH A . L 5 HOH 19 319 319 HOH HOH A . L 5 HOH 20 320 320 HOH HOH A . L 5 HOH 21 321 321 HOH HOH A . L 5 HOH 22 322 322 HOH HOH A . L 5 HOH 23 323 323 HOH HOH A . L 5 HOH 24 324 324 HOH HOH A . L 5 HOH 25 325 325 HOH HOH A . L 5 HOH 26 326 326 HOH HOH A . L 5 HOH 27 327 327 HOH HOH A . L 5 HOH 28 328 328 HOH HOH A . L 5 HOH 29 329 329 HOH HOH A . L 5 HOH 30 330 330 HOH HOH A . L 5 HOH 31 331 331 HOH HOH A . L 5 HOH 32 332 332 HOH HOH A . L 5 HOH 33 333 333 HOH HOH A . L 5 HOH 34 334 334 HOH HOH A . L 5 HOH 35 335 335 HOH HOH A . L 5 HOH 36 336 336 HOH HOH A . L 5 HOH 37 337 337 HOH HOH A . L 5 HOH 38 338 338 HOH HOH A . L 5 HOH 39 339 339 HOH HOH A . L 5 HOH 40 340 340 HOH HOH A . L 5 HOH 41 341 341 HOH HOH A . L 5 HOH 42 342 342 HOH HOH A . L 5 HOH 43 343 343 HOH HOH A . L 5 HOH 44 344 344 HOH HOH A . L 5 HOH 45 345 345 HOH HOH A . L 5 HOH 46 346 346 HOH HOH A . L 5 HOH 47 347 347 HOH HOH A . L 5 HOH 48 348 348 HOH HOH A . L 5 HOH 49 349 349 HOH HOH A . L 5 HOH 50 350 350 HOH HOH A . L 5 HOH 51 351 351 HOH HOH A . L 5 HOH 52 352 352 HOH HOH A . L 5 HOH 53 353 353 HOH HOH A . L 5 HOH 54 354 354 HOH HOH A . L 5 HOH 55 355 355 HOH HOH A . L 5 HOH 56 356 356 HOH HOH A . L 5 HOH 57 357 357 HOH HOH A . L 5 HOH 58 358 358 HOH HOH A . L 5 HOH 59 359 359 HOH HOH A . L 5 HOH 60 360 360 HOH HOH A . L 5 HOH 61 361 361 HOH HOH A . L 5 HOH 62 362 362 HOH HOH A . L 5 HOH 63 363 363 HOH HOH A . L 5 HOH 64 364 364 HOH HOH A . L 5 HOH 65 365 365 HOH HOH A . L 5 HOH 66 366 366 HOH HOH A . L 5 HOH 67 367 367 HOH HOH A . L 5 HOH 68 368 368 HOH HOH A . L 5 HOH 69 369 369 HOH HOH A . L 5 HOH 70 370 370 HOH HOH A . L 5 HOH 71 371 371 HOH HOH A . L 5 HOH 72 372 372 HOH HOH A . L 5 HOH 73 373 373 HOH HOH A . L 5 HOH 74 374 374 HOH HOH A . L 5 HOH 75 375 375 HOH HOH A . L 5 HOH 76 376 376 HOH HOH A . L 5 HOH 77 378 378 HOH HOH A . L 5 HOH 78 379 379 HOH HOH A . L 5 HOH 79 380 380 HOH HOH A . L 5 HOH 80 381 381 HOH HOH A . L 5 HOH 81 382 382 HOH HOH A . L 5 HOH 82 383 383 HOH HOH A . L 5 HOH 83 384 384 HOH HOH A . L 5 HOH 84 385 385 HOH HOH A . L 5 HOH 85 387 387 HOH HOH A . L 5 HOH 86 388 388 HOH HOH A . L 5 HOH 87 389 389 HOH HOH A . L 5 HOH 88 390 390 HOH HOH A . L 5 HOH 89 391 391 HOH HOH A . L 5 HOH 90 392 392 HOH HOH A . L 5 HOH 91 393 393 HOH HOH A . L 5 HOH 92 394 394 HOH HOH A . L 5 HOH 93 395 395 HOH HOH A . L 5 HOH 94 396 396 HOH HOH A . L 5 HOH 95 397 397 HOH HOH A . L 5 HOH 96 398 398 HOH HOH A . L 5 HOH 97 399 399 HOH HOH A . L 5 HOH 98 400 400 HOH HOH A . L 5 HOH 99 401 401 HOH HOH A . L 5 HOH 100 402 402 HOH HOH A . L 5 HOH 101 403 403 HOH HOH A . L 5 HOH 102 405 405 HOH HOH A . L 5 HOH 103 406 406 HOH HOH A . L 5 HOH 104 407 407 HOH HOH A . L 5 HOH 105 408 408 HOH HOH A . L 5 HOH 106 409 409 HOH HOH A . L 5 HOH 107 410 410 HOH HOH A . L 5 HOH 108 411 411 HOH HOH A . L 5 HOH 109 412 412 HOH HOH A . L 5 HOH 110 413 413 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 CNS refinement . ? 2 CrystalClear 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 34 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.066 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6GO C6A C N N 1 6GO O6 O N N 2 6GO C6 C Y N 3 6GO N1 N Y N 4 6GO C5 C Y N 5 6GO N7 N Y N 6 6GO C8 C Y N 7 6GO N9 N Y N 8 6GO C4 C Y N 9 6GO N3 N Y N 10 6GO C2 C Y N 11 6GO N2 N N N 12 6GO H6A H N N 13 6GO H6AA H N N 14 6GO H6AB H N N 15 6GO H8 H N N 16 6GO HN2 H N N 17 6GO HN2A H N N 18 6GO HN7 H N N 19 A OP3 O N N 20 A P P N N 21 A OP1 O N N 22 A OP2 O N N 23 A "O5'" O N N 24 A "C5'" C N N 25 A "C4'" C N R 26 A "O4'" O N N 27 A "C3'" C N S 28 A "O3'" O N N 29 A "C2'" C N R 30 A "O2'" O N N 31 A "C1'" C N R 32 A N9 N Y N 33 A C8 C Y N 34 A N7 N Y N 35 A C5 C Y N 36 A C6 C Y N 37 A N6 N N N 38 A N1 N Y N 39 A C2 C Y N 40 A N3 N Y N 41 A C4 C Y N 42 A HOP3 H N N 43 A HOP2 H N N 44 A "H5'" H N N 45 A "H5''" H N N 46 A "H4'" H N N 47 A "H3'" H N N 48 A "HO3'" H N N 49 A "H2'" H N N 50 A "HO2'" H N N 51 A "H1'" H N N 52 A H8 H N N 53 A H61 H N N 54 A H62 H N N 55 A H2 H N N 56 ACT C C N N 57 ACT O O N N 58 ACT OXT O N N 59 ACT CH3 C N N 60 ACT H1 H N N 61 ACT H2 H N N 62 ACT H3 H N N 63 C OP3 O N N 64 C P P N N 65 C OP1 O N N 66 C OP2 O N N 67 C "O5'" O N N 68 C "C5'" C N N 69 C "C4'" C N R 70 C "O4'" O N N 71 C "C3'" C N S 72 C "O3'" O N N 73 C "C2'" C N R 74 C "O2'" O N N 75 C "C1'" C N R 76 C N1 N N N 77 C C2 C N N 78 C O2 O N N 79 C N3 N N N 80 C C4 C N N 81 C N4 N N N 82 C C5 C N N 83 C C6 C N N 84 C HOP3 H N N 85 C HOP2 H N N 86 C "H5'" H N N 87 C "H5''" H N N 88 C "H4'" H N N 89 C "H3'" H N N 90 C "HO3'" H N N 91 C "H2'" H N N 92 C "HO2'" H N N 93 C "H1'" H N N 94 C H41 H N N 95 C H42 H N N 96 C H5 H N N 97 C H6 H N N 98 G OP3 O N N 99 G P P N N 100 G OP1 O N N 101 G OP2 O N N 102 G "O5'" O N N 103 G "C5'" C N N 104 G "C4'" C N R 105 G "O4'" O N N 106 G "C3'" C N S 107 G "O3'" O N N 108 G "C2'" C N R 109 G "O2'" O N N 110 G "C1'" C N R 111 G N9 N Y N 112 G C8 C Y N 113 G N7 N Y N 114 G C5 C Y N 115 G C6 C N N 116 G O6 O N N 117 G N1 N N N 118 G C2 C N N 119 G N2 N N N 120 G N3 N N N 121 G C4 C Y N 122 G HOP3 H N N 123 G HOP2 H N N 124 G "H5'" H N N 125 G "H5''" H N N 126 G "H4'" H N N 127 G "H3'" H N N 128 G "HO3'" H N N 129 G "H2'" H N N 130 G "HO2'" H N N 131 G "H1'" H N N 132 G H8 H N N 133 G H1 H N N 134 G H21 H N N 135 G H22 H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 NCO CO CO N N 140 NCO N1 N N N 141 NCO N2 N N N 142 NCO N3 N N N 143 NCO N4 N N N 144 NCO N5 N N N 145 NCO N6 N N N 146 NCO HN11 H N N 147 NCO HN12 H N N 148 NCO HN13 H N N 149 NCO HN21 H N N 150 NCO HN22 H N N 151 NCO HN23 H N N 152 NCO HN31 H N N 153 NCO HN32 H N N 154 NCO HN33 H N N 155 NCO HN41 H N N 156 NCO HN42 H N N 157 NCO HN43 H N N 158 NCO HN51 H N N 159 NCO HN52 H N N 160 NCO HN53 H N N 161 NCO HN61 H N N 162 NCO HN62 H N N 163 NCO HN63 H N N 164 U OP3 O N N 165 U P P N N 166 U OP1 O N N 167 U OP2 O N N 168 U "O5'" O N N 169 U "C5'" C N N 170 U "C4'" C N R 171 U "O4'" O N N 172 U "C3'" C N S 173 U "O3'" O N N 174 U "C2'" C N R 175 U "O2'" O N N 176 U "C1'" C N R 177 U N1 N N N 178 U C2 C N N 179 U O2 O N N 180 U N3 N N N 181 U C4 C N N 182 U O4 O N N 183 U C5 C N N 184 U C6 C N N 185 U HOP3 H N N 186 U HOP2 H N N 187 U "H5'" H N N 188 U "H5''" H N N 189 U "H4'" H N N 190 U "H3'" H N N 191 U "HO3'" H N N 192 U "H2'" H N N 193 U "HO2'" H N N 194 U "H1'" H N N 195 U H3 H N N 196 U H5 H N N 197 U H6 H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6GO O6 C6A sing N N 1 6GO C6A H6A sing N N 2 6GO C6A H6AA sing N N 3 6GO C6A H6AB sing N N 4 6GO O6 C6 sing N N 5 6GO C5 C6 doub Y N 6 6GO C6 N1 sing Y N 7 6GO N1 C2 doub Y N 8 6GO N7 C5 sing Y N 9 6GO C5 C4 sing Y N 10 6GO C8 N7 sing Y N 11 6GO C8 N9 doub Y N 12 6GO C8 H8 sing N N 13 6GO N9 C4 sing Y N 14 6GO C4 N3 doub Y N 15 6GO N3 C2 sing Y N 16 6GO C2 N2 sing N N 17 6GO N2 HN2 sing N N 18 6GO N2 HN2A sing N N 19 6GO N7 HN7 sing N N 20 A OP3 P sing N N 21 A OP3 HOP3 sing N N 22 A P OP1 doub N N 23 A P OP2 sing N N 24 A P "O5'" sing N N 25 A OP2 HOP2 sing N N 26 A "O5'" "C5'" sing N N 27 A "C5'" "C4'" sing N N 28 A "C5'" "H5'" sing N N 29 A "C5'" "H5''" sing N N 30 A "C4'" "O4'" sing N N 31 A "C4'" "C3'" sing N N 32 A "C4'" "H4'" sing N N 33 A "O4'" "C1'" sing N N 34 A "C3'" "O3'" sing N N 35 A "C3'" "C2'" sing N N 36 A "C3'" "H3'" sing N N 37 A "O3'" "HO3'" sing N N 38 A "C2'" "O2'" sing N N 39 A "C2'" "C1'" sing N N 40 A "C2'" "H2'" sing N N 41 A "O2'" "HO2'" sing N N 42 A "C1'" N9 sing N N 43 A "C1'" "H1'" sing N N 44 A N9 C8 sing Y N 45 A N9 C4 sing Y N 46 A C8 N7 doub Y N 47 A C8 H8 sing N N 48 A N7 C5 sing Y N 49 A C5 C6 sing Y N 50 A C5 C4 doub Y N 51 A C6 N6 sing N N 52 A C6 N1 doub Y N 53 A N6 H61 sing N N 54 A N6 H62 sing N N 55 A N1 C2 sing Y N 56 A C2 N3 doub Y N 57 A C2 H2 sing N N 58 A N3 C4 sing Y N 59 ACT C O doub N N 60 ACT C OXT sing N N 61 ACT C CH3 sing N N 62 ACT CH3 H1 sing N N 63 ACT CH3 H2 sing N N 64 ACT CH3 H3 sing N N 65 C OP3 P sing N N 66 C OP3 HOP3 sing N N 67 C P OP1 doub N N 68 C P OP2 sing N N 69 C P "O5'" sing N N 70 C OP2 HOP2 sing N N 71 C "O5'" "C5'" sing N N 72 C "C5'" "C4'" sing N N 73 C "C5'" "H5'" sing N N 74 C "C5'" "H5''" sing N N 75 C "C4'" "O4'" sing N N 76 C "C4'" "C3'" sing N N 77 C "C4'" "H4'" sing N N 78 C "O4'" "C1'" sing N N 79 C "C3'" "O3'" sing N N 80 C "C3'" "C2'" sing N N 81 C "C3'" "H3'" sing N N 82 C "O3'" "HO3'" sing N N 83 C "C2'" "O2'" sing N N 84 C "C2'" "C1'" sing N N 85 C "C2'" "H2'" sing N N 86 C "O2'" "HO2'" sing N N 87 C "C1'" N1 sing N N 88 C "C1'" "H1'" sing N N 89 C N1 C2 sing N N 90 C N1 C6 sing N N 91 C C2 O2 doub N N 92 C C2 N3 sing N N 93 C N3 C4 doub N N 94 C C4 N4 sing N N 95 C C4 C5 sing N N 96 C N4 H41 sing N N 97 C N4 H42 sing N N 98 C C5 C6 doub N N 99 C C5 H5 sing N N 100 C C6 H6 sing N N 101 G OP3 P sing N N 102 G OP3 HOP3 sing N N 103 G P OP1 doub N N 104 G P OP2 sing N N 105 G P "O5'" sing N N 106 G OP2 HOP2 sing N N 107 G "O5'" "C5'" sing N N 108 G "C5'" "C4'" sing N N 109 G "C5'" "H5'" sing N N 110 G "C5'" "H5''" sing N N 111 G "C4'" "O4'" sing N N 112 G "C4'" "C3'" sing N N 113 G "C4'" "H4'" sing N N 114 G "O4'" "C1'" sing N N 115 G "C3'" "O3'" sing N N 116 G "C3'" "C2'" sing N N 117 G "C3'" "H3'" sing N N 118 G "O3'" "HO3'" sing N N 119 G "C2'" "O2'" sing N N 120 G "C2'" "C1'" sing N N 121 G "C2'" "H2'" sing N N 122 G "O2'" "HO2'" sing N N 123 G "C1'" N9 sing N N 124 G "C1'" "H1'" sing N N 125 G N9 C8 sing Y N 126 G N9 C4 sing Y N 127 G C8 N7 doub Y N 128 G C8 H8 sing N N 129 G N7 C5 sing Y N 130 G C5 C6 sing N N 131 G C5 C4 doub Y N 132 G C6 O6 doub N N 133 G C6 N1 sing N N 134 G N1 C2 sing N N 135 G N1 H1 sing N N 136 G C2 N2 sing N N 137 G C2 N3 doub N N 138 G N2 H21 sing N N 139 G N2 H22 sing N N 140 G N3 C4 sing N N 141 HOH O H1 sing N N 142 HOH O H2 sing N N 143 NCO CO N1 sing N N 144 NCO CO N2 sing N N 145 NCO CO N3 sing N N 146 NCO CO N4 sing N N 147 NCO CO N5 sing N N 148 NCO CO N6 sing N N 149 NCO N1 HN11 sing N N 150 NCO N1 HN12 sing N N 151 NCO N1 HN13 sing N N 152 NCO N2 HN21 sing N N 153 NCO N2 HN22 sing N N 154 NCO N2 HN23 sing N N 155 NCO N3 HN31 sing N N 156 NCO N3 HN32 sing N N 157 NCO N3 HN33 sing N N 158 NCO N4 HN41 sing N N 159 NCO N4 HN42 sing N N 160 NCO N4 HN43 sing N N 161 NCO N5 HN51 sing N N 162 NCO N5 HN52 sing N N 163 NCO N5 HN53 sing N N 164 NCO N6 HN61 sing N N 165 NCO N6 HN62 sing N N 166 NCO N6 HN63 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GES 'double helix' 3GES 'a-form double helix' 3GES 'mismatched base pair' 3GES 'internal loop' 3GES 'triple helix' 3GES 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 -0.067 -0.178 0.741 4.169 -8.663 -5.255 1 A_G15:C81_A A 15 ? A 81 ? 19 1 1 A G 2 1_555 A C 66 1_555 -0.183 -0.131 0.118 -1.018 -14.851 1.560 2 A_G16:C80_A A 16 ? A 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 -0.009 -0.142 -0.135 5.725 -18.369 3.006 3 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 0.126 -0.112 0.118 0.328 -8.228 -0.146 4 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 0.061 -0.115 -0.161 -4.257 -10.334 6.927 5 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.000 -0.178 0.461 -12.347 -17.173 7.474 6 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.102 -0.025 0.143 6.342 -8.777 1.743 7 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 37 1_555 A U 33 1_555 -3.568 -0.787 0.691 -28.450 42.764 -66.285 8 A_U51:U47_A A 51 ? A 47 ? ? ? 1 A A 38 1_555 A U 8 1_555 -0.063 -0.100 -0.487 -8.877 0.931 3.694 9 A_A52:U22_A A 52 ? A 22 ? 20 1 1 A C 39 1_555 A G 32 1_555 0.265 0.013 -0.500 19.615 -6.680 1.136 10 A_C53:G46_A A 53 ? A 46 ? 19 1 1 A U 11 1_555 A A 31 1_555 -0.094 -0.174 0.484 -5.655 -11.177 3.661 11 A_U25:A45_A A 25 ? A 45 ? 20 1 1 A G 13 1_555 A C 29 1_555 -0.213 -0.020 0.013 1.968 -2.657 -1.661 12 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A C 14 1_555 A G 28 1_555 0.022 -0.090 -0.433 12.794 -9.610 -1.392 13 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.299 -0.131 0.000 2.637 -11.188 2.288 14 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A U 16 1_555 A A 26 1_555 0.018 -0.173 -0.245 7.873 -5.974 3.462 15 A_U30:A40_A A 30 ? A 40 ? 20 1 1 A G 17 1_555 A C 25 1_555 -0.280 -0.259 0.153 6.188 -2.310 1.010 16 A_G31:C39_A A 31 ? A 39 ? 19 1 1 A A 19 1_555 A A 52 1_555 3.993 1.366 -0.069 -7.091 -4.692 -107.807 17 A_A33:A66_A A 33 ? A 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 4.144 -2.076 -0.514 -1.779 -5.784 -100.414 18 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A A 21 1_555 A A 50 1_555 -4.191 1.299 0.398 -1.516 5.252 -107.488 19 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A G 23 1_555 A C 47 1_555 -0.178 -0.196 0.745 2.894 -11.070 -3.630 20 A_G37:C61_A A 37 ? A 61 ? 19 1 1 A G 24 1_555 A C 46 1_555 -0.089 -0.071 0.667 21.083 -13.623 -0.738 21 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.070 -0.135 0.276 -1.765 -12.259 1.818 22 A_U67:A59_A A 67 ? A 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.173 -0.197 -0.043 -3.248 -14.452 0.357 23 A_G68:C58_A A 68 ? A 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.251 -0.801 0.125 -2.198 -15.954 -1.934 24 A_U69:G57_A A 69 ? A 57 ? 28 1 1 A C 56 1_555 A G 42 1_555 0.212 -0.155 0.332 0.463 -15.271 -0.795 25 A_C70:G56_A A 70 ? A 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 0.242 -0.101 0.010 8.022 -12.498 -2.100 26 A_C71:G55_A A 71 ? A 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.271 -0.257 -0.129 0.779 -17.713 2.458 27 A_G72:C54_A A 72 ? A 54 ? 19 1 1 A G 48 1_555 A U 49 1_555 -7.891 1.328 -0.911 2.808 5.999 -14.012 28 A_G62:U63_A A 62 ? A 63 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A C 66 1_555 0.929 -2.141 3.382 3.477 3.123 37.610 -3.706 -0.976 3.270 4.821 -5.368 37.889 1 AA_G15G16:C80C81_AA A 15 ? A 81 ? A 16 ? A 80 ? 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 -0.162 -1.565 3.048 2.948 8.542 33.811 -3.732 0.658 2.566 14.371 -4.960 34.963 2 AA_G16A17:U79C80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.857 -1.634 3.324 -1.243 7.791 28.829 -4.703 -1.908 2.759 15.290 2.440 29.867 3 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 0.078 -1.576 3.128 2.513 13.457 32.904 -4.285 0.191 2.326 22.579 -4.217 35.565 4 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 -0.014 -1.259 3.467 -2.406 15.125 29.837 -4.623 -0.363 2.545 27.233 4.332 33.458 5 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.362 -1.443 2.586 4.006 15.140 29.444 -4.284 -0.166 1.696 27.476 -7.270 33.268 6 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 7 1_555 A U 61 1_555 A U 37 1_555 A U 33 1_555 -1.560 6.400 2.274 19.128 4.932 159.250 3.243 0.828 2.275 2.506 -9.720 159.561 7 AA_A21U51:U47U75_AA A 21 ? A 75 ? A 51 ? A 47 ? 1 A U 37 1_555 A U 33 1_555 A A 38 1_555 A U 8 1_555 0.056 -0.870 3.191 -0.412 23.411 2.951 -8.006 -0.242 -0.462 82.904 1.460 23.597 8 AA_U51A52:U22U47_AA A 51 ? A 47 ? A 52 ? A 22 ? 1 A A 38 1_555 A U 8 1_555 A C 39 1_555 A G 32 1_555 1.967 0.289 2.509 3.625 14.718 43.258 -0.665 -2.277 2.618 19.272 -4.747 45.717 9 AA_A52C53:G46U22_AA A 52 ? A 22 ? A 53 ? A 46 ? 1 A C 39 1_555 A G 32 1_555 A U 11 1_555 A A 31 1_555 -2.404 -0.424 3.606 -20.877 7.008 53.794 -0.902 1.106 4.130 7.406 22.063 57.814 10 AA_C53U25:A45G46_AA A 53 ? A 46 ? A 25 ? A 45 ? 1 A U 11 1_555 A A 31 1_555 A G 13 1_555 A C 29 1_555 -1.670 -4.257 5.836 -4.069 16.843 59.484 -5.441 1.315 4.688 16.597 4.009 61.734 11 AA_U25G27:C43A45_AA A 25 ? A 45 ? A 27 ? A 43 ? 1 A G 13 1_555 A C 29 1_555 A C 14 1_555 A G 28 1_555 0.542 -2.162 3.175 2.709 -2.048 26.198 -4.184 -0.462 3.369 -4.494 -5.944 26.413 12 AA_G27C28:G42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -0.441 -1.758 3.459 -2.644 11.696 28.263 -5.543 0.334 2.575 22.704 5.132 30.653 13 AA_C28G29:C41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 15 1_555 A C 27 1_555 A U 16 1_555 A A 26 1_555 -0.122 -1.195 3.158 -0.225 10.995 32.033 -3.668 0.176 2.618 19.230 0.394 33.822 14 AA_G29U30:A40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A U 16 1_555 A A 26 1_555 A G 17 1_555 A C 25 1_555 0.755 -1.759 3.249 -2.966 5.254 31.316 -4.102 -1.882 2.842 9.621 5.432 31.877 15 AA_U30G31:C39A40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 0.104 -1.677 3.389 9.708 3.302 38.039 -2.891 1.021 3.170 4.957 -14.573 39.347 16 AA_A33U34:A65A66_AA A 33 ? A 66 ? A 34 ? A 65 ? 1 A U 20 1_555 A A 51 1_555 A A 21 1_555 A A 50 1_555 -3.629 3.876 3.642 -21.846 19.361 -18.127 -7.277 -6.947 -2.519 -39.018 -44.026 -34.257 17 AA_U34A35:A64A65_AA A 34 ? A 65 ? A 35 ? A 64 ? 1 A G 23 1_555 A C 47 1_555 A G 24 1_555 A C 46 1_555 0.505 -0.695 2.947 1.626 5.665 27.308 -2.632 -0.704 2.774 11.825 -3.394 27.925 18 AA_G37G38:C60C61_AA A 37 ? A 61 ? A 38 ? A 60 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.058 -0.494 3.612 -4.671 6.806 55.147 -0.970 1.899 3.681 7.306 5.014 55.713 19 AA_G38U67:A59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 -0.332 -1.704 3.236 0.885 5.376 33.969 -3.678 0.693 2.931 9.129 -1.503 34.391 20 AA_U67G68:C58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.363 -1.075 3.233 -0.366 3.128 43.273 -1.752 0.456 3.154 4.235 0.496 43.382 21 AA_G68U69:G57C58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 -0.089 -1.526 2.996 1.623 8.627 27.255 -4.743 0.491 2.400 17.734 -3.337 28.609 22 AA_U69C70:G56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.082 -0.549 3.054 2.441 7.027 29.999 -2.281 0.280 2.853 13.319 -4.626 30.887 23 AA_C70C71:G55G56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.713 -1.595 3.403 -0.460 9.544 33.606 -4.069 -1.257 2.848 16.106 0.776 34.900 24 AA_C71G72:C54G55_AA A 71 ? A 55 ? A 72 ? A 54 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 6-O-methylguanine 6GO 3 'ACETATE ION' ACT 4 'COBALT HEXAMMINE(III)' NCO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1U8D _pdbx_initial_refinement_model.details 'PDB entry 1U8D' #