HEADER ISOMERASE 26-FEB-09 3GF4 TITLE STRUCTURE OF UDP-GALACTOPYRANOSE MUTASE BOUND TO UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.4.99.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 STRAIN: 01; SOURCE 5 GENE: GLF, RFBD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEM-TEASY KEYWDS FLAVOENZYME, PROTEIN-LIGAND COMPLEX, CARBOHYDRATE BIOSYNTHESIS, FAD, KEYWDS 2 FLAVOPROTEIN, ISOMERASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR T.D.GRUBER,M.J.BORROK,L.L.KIESSLING,K.T.FOREST REVDAT 5 06-SEP-23 3GF4 1 REMARK REVDAT 4 20-OCT-21 3GF4 1 REMARK SEQADV REVDAT 3 01-NOV-17 3GF4 1 REMARK REVDAT 2 25-AUG-09 3GF4 1 JRNL REVDAT 1 09-JUN-09 3GF4 0 JRNL AUTH T.D.GRUBER,M.J.BORROK,W.M.WESTLER,K.T.FOREST,L.L.KIESSLING JRNL TITL LIGAND BINDING AND SUBSTRATE DISCRIMINATION BY JRNL TITL 2 UDP-GALACTOPYRANOSE MUTASE. JRNL REF J.MOL.BIOL. V. 391 327 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19500588 JRNL DOI 10.1016/J.JMB.2009.05.081 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 40988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2820 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 163 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : -1.79000 REMARK 3 B33 (A**2) : 3.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.252 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6582 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8945 ; 1.712 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 764 ; 6.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 334 ;36.225 ;24.072 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1068 ;16.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.512 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5072 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2889 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4478 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3917 ; 1.466 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6166 ; 1.698 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3222 ; 2.857 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2779 ; 3.974 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9002 REMARK 200 MONOCHROMATOR : DOUBLE DIAMOND REMARK 200 OPTICS : RHODIUM COATED TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 14.8310 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36600 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BI8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN, 85 MM AMMONIUM REMARK 280 ACETATE, 42 MM TRI-SODIUM CITRATE, 12.3% PEG 4000, 7.5% GLYCEROL, REMARK 280 15 MM L-CYSTEINE, 5 MM UDP-GLC, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.12950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.56475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.69425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 MET B 1 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 166 CG GLU A 166 CD 0.108 REMARK 500 GLU B 123 CG GLU B 123 CD 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 250 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 240 32.01 -97.37 REMARK 500 SER A 288 62.95 -118.22 REMARK 500 TYR A 313 -71.69 -119.04 REMARK 500 ASN A 373 59.60 27.73 REMARK 500 THR B 128 34.79 -77.58 REMARK 500 ILE B 129 106.57 -169.52 REMARK 500 PHE B 179 45.64 -96.32 REMARK 500 TYR B 240 32.09 -99.71 REMARK 500 GLN B 264 -17.44 -140.81 REMARK 500 TYR B 313 -80.13 -113.67 REMARK 500 ASN B 337 54.75 -112.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B 392 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I8T RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM E. COLI REMARK 900 RELATED ID: 2BI7 RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM K. PNEUMONIAE, OXIDIZED REMARK 900 RELATED ID: 2BI8 RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM K. PNEUMONIAE, REDUCED REMARK 900 RELATED ID: 1WAM RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM K. PNEUMONIAE, REDUCED REMARK 900 RELATED ID: 1V0J RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM M. TUBERCULOSIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE ARE VERY CONSERVATIVE MUTATIONS FROM THE PUBLISHED SEQUENCE. REMARK 999 THEY REFLECT SEQUENCE DIFFERENCES IN THE ISOLATE THAT OUR CLONED REMARK 999 DNA CAME FROM RATHER THAN ERRORS IN THE STRUCTURE OR THE PDB FILE DBREF 3GF4 A 1 384 UNP Q48485 GLF1_KLEPN 1 384 DBREF 3GF4 B 1 384 UNP Q48485 GLF1_KLEPN 1 384 SEQADV 3GF4 ILE A 73 UNP Q48485 VAL 73 SEE REMARK 999 SEQADV 3GF4 ASP A 222 UNP Q48485 GLU 222 SEE REMARK 999 SEQADV 3GF4 ILE A 258 UNP Q48485 THR 258 SEE REMARK 999 SEQADV 3GF4 ASP A 372 UNP Q48485 GLU 372 SEE REMARK 999 SEQADV 3GF4 GLY A 384 UNP Q48485 ARG 384 ENGINEERED MUTATION SEQADV 3GF4 HIS A 385 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS A 386 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS A 387 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS A 388 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS A 389 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS A 390 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 ILE B 73 UNP Q48485 VAL 73 SEE REMARK 999 SEQADV 3GF4 ASP B 222 UNP Q48485 GLU 222 SEE REMARK 999 SEQADV 3GF4 ILE B 258 UNP Q48485 THR 258 SEE REMARK 999 SEQADV 3GF4 ASP B 372 UNP Q48485 GLU 372 SEE REMARK 999 SEQADV 3GF4 GLY B 384 UNP Q48485 ARG 384 ENGINEERED MUTATION SEQADV 3GF4 HIS B 385 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS B 386 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS B 387 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS B 388 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS B 389 UNP Q48485 EXPRESSION TAG SEQADV 3GF4 HIS B 390 UNP Q48485 EXPRESSION TAG SEQRES 1 A 390 MET LYS SER LYS LYS ILE LEU ILE VAL GLY ALA GLY PHE SEQRES 2 A 390 SER GLY ALA VAL ILE GLY ARG GLN LEU ALA GLU LYS GLY SEQRES 3 A 390 HIS GLN VAL HIS ILE ILE ASP GLN ARG ASP HIS ILE GLY SEQRES 4 A 390 GLY ASN SER TYR ASP ALA ARG ASP SER GLU THR ASN VAL SEQRES 5 A 390 MET VAL HIS VAL TYR GLY PRO HIS ILE PHE HIS THR ASP SEQRES 6 A 390 ASN GLU THR VAL TRP ASN TYR ILE ASN LYS HIS ALA GLU SEQRES 7 A 390 MET MET PRO TYR VAL ASN ARG VAL LYS ALA THR VAL ASN SEQRES 8 A 390 GLY GLN VAL PHE SER LEU PRO ILE ASN LEU HIS THR ILE SEQRES 9 A 390 ASN GLN PHE PHE SER LYS THR CYS SER PRO ASP GLU ALA SEQRES 10 A 390 ARG ALA LEU ILE ALA GLU LYS GLY ASP SER THR ILE ALA SEQRES 11 A 390 ASP PRO GLN THR PHE GLU GLU GLN ALA LEU ARG PHE ILE SEQRES 12 A 390 GLY LYS GLU LEU TYR GLU ALA PHE PHE LYS GLY TYR THR SEQRES 13 A 390 ILE LYS GLN TRP GLY MET GLN PRO SER GLU LEU PRO ALA SEQRES 14 A 390 SER ILE LEU LYS ARG LEU PRO VAL ARG PHE ASN TYR ASP SEQRES 15 A 390 ASP ASN TYR PHE ASN HIS LYS PHE GLN GLY MET PRO LYS SEQRES 16 A 390 CYS GLY TYR THR GLN MET ILE LYS SER ILE LEU ASN HIS SEQRES 17 A 390 GLU ASN ILE LYS VAL ASP LEU GLN ARG GLU PHE ILE VAL SEQRES 18 A 390 ASP GLU ARG THR HIS TYR ASP HIS VAL PHE TYR SER GLY SEQRES 19 A 390 PRO LEU ASP ALA PHE TYR GLY TYR GLN TYR GLY ARG LEU SEQRES 20 A 390 GLY TYR ARG THR LEU ASP PHE LYS LYS PHE ILE TYR GLN SEQRES 21 A 390 GLY ASP TYR GLN GLY CYS ALA VAL MET ASN TYR CYS SER SEQRES 22 A 390 VAL ASP VAL PRO TYR THR ARG ILE THR GLU HIS LYS TYR SEQRES 23 A 390 PHE SER PRO TRP GLU GLN HIS ASP GLY SER VAL CYS TYR SEQRES 24 A 390 LYS GLU TYR SER ARG ALA CYS GLU GLU ASN ASP ILE PRO SEQRES 25 A 390 TYR TYR PRO ILE ARG GLN MET GLY GLU MET ALA LEU LEU SEQRES 26 A 390 GLU LYS TYR LEU SER LEU ALA GLU ASN GLU THR ASN ILE SEQRES 27 A 390 THR PHE VAL GLY ARG LEU GLY THR TYR ARG TYR LEU ASP SEQRES 28 A 390 MET ASP VAL THR ILE ALA GLU ALA LEU LYS THR ALA GLU SEQRES 29 A 390 VAL TYR LEU ASN SER LEU THR ASP ASN GLN PRO MET PRO SEQRES 30 A 390 VAL PHE THR VAL SER VAL GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 390 MET LYS SER LYS LYS ILE LEU ILE VAL GLY ALA GLY PHE SEQRES 2 B 390 SER GLY ALA VAL ILE GLY ARG GLN LEU ALA GLU LYS GLY SEQRES 3 B 390 HIS GLN VAL HIS ILE ILE ASP GLN ARG ASP HIS ILE GLY SEQRES 4 B 390 GLY ASN SER TYR ASP ALA ARG ASP SER GLU THR ASN VAL SEQRES 5 B 390 MET VAL HIS VAL TYR GLY PRO HIS ILE PHE HIS THR ASP SEQRES 6 B 390 ASN GLU THR VAL TRP ASN TYR ILE ASN LYS HIS ALA GLU SEQRES 7 B 390 MET MET PRO TYR VAL ASN ARG VAL LYS ALA THR VAL ASN SEQRES 8 B 390 GLY GLN VAL PHE SER LEU PRO ILE ASN LEU HIS THR ILE SEQRES 9 B 390 ASN GLN PHE PHE SER LYS THR CYS SER PRO ASP GLU ALA SEQRES 10 B 390 ARG ALA LEU ILE ALA GLU LYS GLY ASP SER THR ILE ALA SEQRES 11 B 390 ASP PRO GLN THR PHE GLU GLU GLN ALA LEU ARG PHE ILE SEQRES 12 B 390 GLY LYS GLU LEU TYR GLU ALA PHE PHE LYS GLY TYR THR SEQRES 13 B 390 ILE LYS GLN TRP GLY MET GLN PRO SER GLU LEU PRO ALA SEQRES 14 B 390 SER ILE LEU LYS ARG LEU PRO VAL ARG PHE ASN TYR ASP SEQRES 15 B 390 ASP ASN TYR PHE ASN HIS LYS PHE GLN GLY MET PRO LYS SEQRES 16 B 390 CYS GLY TYR THR GLN MET ILE LYS SER ILE LEU ASN HIS SEQRES 17 B 390 GLU ASN ILE LYS VAL ASP LEU GLN ARG GLU PHE ILE VAL SEQRES 18 B 390 ASP GLU ARG THR HIS TYR ASP HIS VAL PHE TYR SER GLY SEQRES 19 B 390 PRO LEU ASP ALA PHE TYR GLY TYR GLN TYR GLY ARG LEU SEQRES 20 B 390 GLY TYR ARG THR LEU ASP PHE LYS LYS PHE ILE TYR GLN SEQRES 21 B 390 GLY ASP TYR GLN GLY CYS ALA VAL MET ASN TYR CYS SER SEQRES 22 B 390 VAL ASP VAL PRO TYR THR ARG ILE THR GLU HIS LYS TYR SEQRES 23 B 390 PHE SER PRO TRP GLU GLN HIS ASP GLY SER VAL CYS TYR SEQRES 24 B 390 LYS GLU TYR SER ARG ALA CYS GLU GLU ASN ASP ILE PRO SEQRES 25 B 390 TYR TYR PRO ILE ARG GLN MET GLY GLU MET ALA LEU LEU SEQRES 26 B 390 GLU LYS TYR LEU SER LEU ALA GLU ASN GLU THR ASN ILE SEQRES 27 B 390 THR PHE VAL GLY ARG LEU GLY THR TYR ARG TYR LEU ASP SEQRES 28 B 390 MET ASP VAL THR ILE ALA GLU ALA LEU LYS THR ALA GLU SEQRES 29 B 390 VAL TYR LEU ASN SER LEU THR ASP ASN GLN PRO MET PRO SEQRES 30 B 390 VAL PHE THR VAL SER VAL GLY HIS HIS HIS HIS HIS HIS HET FAD A 391 53 HET UPG A 392 36 HET FAD B 391 53 HET U5P B 392 21 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 UPG C15 H24 N2 O17 P2 FORMUL 6 U5P C9 H13 N2 O9 P FORMUL 7 HOH *195(H2 O) HELIX 1 1 GLY A 12 GLU A 24 1 13 HELIX 2 2 GLY A 39 SER A 42 5 4 HELIX 3 3 ASN A 66 LYS A 75 1 10 HELIX 4 4 ASN A 100 SER A 109 1 10 HELIX 5 5 SER A 113 GLY A 125 1 13 HELIX 6 6 THR A 134 ILE A 143 1 10 HELIX 7 7 GLY A 144 PHE A 152 1 9 HELIX 8 8 PHE A 152 GLY A 161 1 10 HELIX 9 9 GLN A 163 PRO A 168 5 6 HELIX 10 10 ALA A 169 ARG A 174 1 6 HELIX 11 11 CYS A 196 ASN A 207 1 12 HELIX 12 12 ILE A 220 TYR A 227 5 8 HELIX 13 13 PRO A 235 TYR A 240 1 6 HELIX 14 14 LYS A 285 SER A 288 5 4 HELIX 15 15 GLN A 318 ASN A 334 1 17 HELIX 16 16 VAL A 341 TYR A 347 1 7 HELIX 17 17 ASP A 351 ASP A 372 1 22 HELIX 18 18 GLY B 12 GLU B 24 1 13 HELIX 19 19 GLY B 39 SER B 42 5 4 HELIX 20 20 ASN B 66 LYS B 75 1 10 HELIX 21 21 ASN B 100 SER B 109 1 10 HELIX 22 22 SER B 113 GLY B 125 1 13 HELIX 23 23 THR B 134 PHE B 152 1 19 HELIX 24 24 PHE B 152 GLY B 161 1 10 HELIX 25 25 PRO B 168 LEU B 172 5 5 HELIX 26 26 CYS B 196 ASN B 207 1 12 HELIX 27 27 ILE B 220 TYR B 227 5 8 HELIX 28 28 PRO B 235 TYR B 240 1 6 HELIX 29 29 LYS B 285 SER B 288 5 4 HELIX 30 30 GLN B 318 GLU B 333 1 16 HELIX 31 31 VAL B 341 THR B 346 1 6 HELIX 32 32 ASP B 351 ASP B 372 1 22 SHEET 1 A 5 ILE A 211 ASP A 214 0 SHEET 2 A 5 GLN A 28 ILE A 32 1 N ILE A 31 O LYS A 212 SHEET 3 A 5 LYS A 5 VAL A 9 1 N ILE A 6 O HIS A 30 SHEET 4 A 5 HIS A 229 TYR A 232 1 O PHE A 231 N VAL A 9 SHEET 5 A 5 ILE A 338 PHE A 340 1 O THR A 339 N VAL A 230 SHEET 1 B 2 ASP A 44 ARG A 46 0 SHEET 2 B 2 MET A 53 HIS A 55 -1 O VAL A 54 N ALA A 45 SHEET 1 C 3 PHE A 62 THR A 64 0 SHEET 2 C 3 PHE A 190 PRO A 194 -1 O PHE A 190 N THR A 64 SHEET 3 C 3 MET A 79 PRO A 81 -1 N MET A 80 O MET A 193 SHEET 1 D 7 GLN A 93 SER A 96 0 SHEET 2 D 7 LYS A 87 VAL A 90 -1 N ALA A 88 O PHE A 95 SHEET 3 D 7 VAL A 268 TYR A 271 1 O ASN A 270 N LYS A 87 SHEET 4 D 7 ARG A 280 GLU A 283 -1 O ILE A 281 N MET A 269 SHEET 5 D 7 GLY A 295 ALA A 305 -1 O TYR A 299 N THR A 282 SHEET 6 D 7 TYR A 249 GLN A 260 -1 N LYS A 255 O LYS A 300 SHEET 7 D 7 TYR A 314 PRO A 315 -1 O TYR A 314 N ARG A 250 SHEET 1 E 5 ILE B 211 ASP B 214 0 SHEET 2 E 5 GLN B 28 ILE B 32 1 N ILE B 31 O LYS B 212 SHEET 3 E 5 LYS B 5 VAL B 9 1 N ILE B 6 O GLN B 28 SHEET 4 E 5 HIS B 229 TYR B 232 1 O PHE B 231 N VAL B 9 SHEET 5 E 5 ILE B 338 PHE B 340 1 O THR B 339 N TYR B 232 SHEET 1 F 2 ASP B 44 ARG B 46 0 SHEET 2 F 2 MET B 53 HIS B 55 -1 O VAL B 54 N ALA B 45 SHEET 1 G 3 PHE B 62 THR B 64 0 SHEET 2 G 3 PHE B 190 PRO B 194 -1 O PHE B 190 N THR B 64 SHEET 3 G 3 MET B 79 PRO B 81 -1 N MET B 80 O MET B 193 SHEET 1 H 7 GLN B 93 LEU B 97 0 SHEET 2 H 7 VAL B 86 VAL B 90 -1 N ALA B 88 O PHE B 95 SHEET 3 H 7 VAL B 268 TYR B 271 1 O ASN B 270 N THR B 89 SHEET 4 H 7 ARG B 280 GLU B 283 -1 O ILE B 281 N MET B 269 SHEET 5 H 7 GLY B 295 ALA B 305 -1 O TYR B 299 N THR B 282 SHEET 6 H 7 TYR B 249 GLN B 260 -1 N TYR B 259 O SER B 296 SHEET 7 H 7 TYR B 314 PRO B 315 -1 O TYR B 314 N ARG B 250 CISPEP 1 LEU A 97 PRO A 98 0 -3.73 CISPEP 2 LEU B 97 PRO B 98 0 3.61 SITE 1 AC1 35 VAL A 9 GLY A 10 GLY A 12 PHE A 13 SITE 2 AC1 35 SER A 14 ASP A 33 GLN A 34 ARG A 35 SITE 3 AC1 35 GLY A 40 ASN A 41 PRO A 59 HIS A 60 SITE 4 AC1 35 ILE A 61 ARG A 217 PHE A 219 TYR A 232 SITE 5 AC1 35 GLY A 234 PRO A 235 TYR A 313 TYR A 314 SITE 6 AC1 35 GLY A 342 ARG A 343 TYR A 349 LEU A 350 SITE 7 AC1 35 ASP A 351 MET A 352 THR A 355 UPG A 392 SITE 8 AC1 35 HOH A 458 HOH A 477 HOH A 515 HOH A 516 SITE 9 AC1 35 HOH A 517 HOH A 518 HOH A 582 SITE 1 AC2 19 PRO A 59 ASN A 84 LEU A 97 PHE A 135 SITE 2 AC2 19 PHE A 151 PHE A 152 TYR A 155 THR A 156 SITE 3 AC2 19 GLN A 159 TRP A 160 ILE A 171 LEU A 175 SITE 4 AC2 19 TYR A 185 PHE A 186 ASN A 270 ARG A 280 SITE 5 AC2 19 TYR A 314 FAD A 391 HOH A 581 SITE 1 AC3 30 VAL B 9 GLY B 10 GLY B 12 PHE B 13 SITE 2 AC3 30 SER B 14 ASP B 33 GLN B 34 ARG B 35 SITE 3 AC3 30 GLY B 40 ASN B 41 PRO B 59 HIS B 60 SITE 4 AC3 30 ILE B 61 ARG B 217 PHE B 219 TYR B 232 SITE 5 AC3 30 GLY B 234 PRO B 235 TYR B 313 ARG B 343 SITE 6 AC3 30 TYR B 349 LEU B 350 ASP B 351 MET B 352 SITE 7 AC3 30 THR B 355 HOH B 406 HOH B 425 HOH B 435 SITE 8 AC3 30 HOH B 460 HOH B 512 SITE 1 AC4 5 PHE B 151 PHE B 152 TYR B 155 THR B 156 SITE 2 AC4 5 TRP B 160 CRYST1 93.951 93.951 130.259 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007677 0.00000