HEADER OXIDOREDUCTASE 26-FEB-09 3GFD TITLE CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) BOUND TITLE 2 TO FMN AND MONO-IODOTYROSINE (MIT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IODOTYROSINE DEHALOGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-285; COMPND 5 SYNONYM: IYD-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DEHAL1, IYD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS IYD, IODIDE SALVAGE, FLAVOPROTEIN, MONO-IODOTYROSINE, MIT, FMN, KEYWDS 2 MEMBRANE, NADP, OXIDOREDUCTASE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR S.R.THOMAS,P.M.MCTAMNEY,J.M.ADLER,N.LARONDE-LEBLANC,S.E.ROKITA REVDAT 4 06-SEP-23 3GFD 1 REMARK SEQADV REVDAT 3 13-JUL-11 3GFD 1 VERSN REVDAT 2 28-JUL-09 3GFD 1 JRNL REVDAT 1 12-MAY-09 3GFD 0 JRNL AUTH S.R.THOMAS,P.M.MCTAMNEY,J.M.ADLER,N.LARONDE-LEBLANC, JRNL AUTH 2 S.E.ROKITA JRNL TITL CRYSTAL STRUCTURE OF IODOTYROSINE DEIODINASE, A NOVEL JRNL TITL 2 FLAVOPROTEIN RESPONSIBLE FOR IODIDE SALVAGE IN THYROID JRNL TITL 3 GLANDS. JRNL REF J.BIOL.CHEM. V. 284 19659 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19436071 JRNL DOI 10.1074/JBC.M109.013458 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 540 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88000 REMARK 3 B22 (A**2) : 1.88000 REMARK 3 B33 (A**2) : -2.82000 REMARK 3 B12 (A**2) : 0.94000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3782 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5128 ; 2.016 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ;17.323 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;33.159 ;22.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;16.196 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.385 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2762 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2042 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2596 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 463 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2255 ; 0.947 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3659 ; 1.736 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 3.002 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1469 ; 5.026 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -50.3441 24.9173 -3.2200 REMARK 3 T TENSOR REMARK 3 T11: -0.1045 T22: -0.0605 REMARK 3 T33: -0.1015 T12: -0.0124 REMARK 3 T13: 0.0069 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8226 L22: 1.5650 REMARK 3 L33: 1.9420 L12: 0.1006 REMARK 3 L13: -0.2828 L23: -0.6421 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0739 S13: 0.1410 REMARK 3 S21: -0.1383 S22: 0.0380 S23: 0.0333 REMARK 3 S31: -0.1110 S32: -0.1064 S33: -0.0527 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 253 REMARK 3 ORIGIN FOR THE GROUP (A): -50.9706 15.1432 12.4426 REMARK 3 T TENSOR REMARK 3 T11: -0.0883 T22: -0.0737 REMARK 3 T33: -0.1048 T12: -0.0065 REMARK 3 T13: 0.0021 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.7237 L22: 1.2811 REMARK 3 L33: 2.4852 L12: 0.0482 REMARK 3 L13: -0.4811 L23: -0.4022 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0721 S13: 0.0300 REMARK 3 S21: 0.1013 S22: 0.0158 S23: -0.0118 REMARK 3 S31: 0.0359 S32: 0.0032 S33: -0.0013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : 0.43900 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3GB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M MGCL2, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.08267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.04133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.04133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.08267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 VAL A 36 REMARK 465 GLN A 37 REMARK 465 PRO A 38 REMARK 465 TRP A 39 REMARK 465 VAL A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 ASP A 46 REMARK 465 SER A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 GLN A 52 REMARK 465 VAL A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 ASP A 56 REMARK 465 ALA A 57 REMARK 465 GLU A 58 REMARK 465 GLU A 59 REMARK 465 TRP A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 ALA A 198 REMARK 465 ALA A 199 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 MET B 33 REMARK 465 ALA B 34 REMARK 465 GLN B 35 REMARK 465 VAL B 36 REMARK 465 GLN B 37 REMARK 465 PRO B 38 REMARK 465 TRP B 39 REMARK 465 VAL B 40 REMARK 465 ASP B 41 REMARK 465 GLU B 42 REMARK 465 ASP B 43 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 ASP B 46 REMARK 465 SER B 47 REMARK 465 THR B 48 REMARK 465 GLU B 49 REMARK 465 ASP B 50 REMARK 465 LEU B 51 REMARK 465 GLN B 52 REMARK 465 VAL B 53 REMARK 465 GLU B 54 REMARK 465 GLU B 55 REMARK 465 ASP B 56 REMARK 465 ALA B 57 REMARK 465 GLU B 58 REMARK 465 GLU B 59 REMARK 465 TRP B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 ALA B 63 REMARK 465 GLU B 64 REMARK 465 GLU B 65 REMARK 465 ALA B 198 REMARK 465 ALA B 199 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 200 CG OD1 ND2 REMARK 470 ASN B 200 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 171 O HOH A 474 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 205 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 ARG B 76 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 76 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU B 92 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 HIS B 206 N - CA - C ANGL. DEV. = 21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 67 100.01 68.44 REMARK 500 PRO A 130 45.18 -85.70 REMARK 500 LYS A 159 -43.25 -140.02 REMARK 500 LEU A 256 -62.58 -99.54 REMARK 500 GLU B 129 61.23 37.46 REMARK 500 PRO B 130 49.12 -90.63 REMARK 500 LYS B 159 -56.62 -139.29 REMARK 500 ASN B 175 -157.75 -145.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 73 HIS A 74 -141.59 REMARK 500 VAL A 134 VAL A 135 -143.05 REMARK 500 LYS A 204 VAL A 205 -131.98 REMARK 500 VAL B 205 HIS B 206 139.40 REMARK 500 THR B 234 THR B 235 143.04 REMARK 500 GLU B 253 LYS B 254 138.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IYR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IYR B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GB5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) REMARK 900 BOUND TO FMN REMARK 900 RELATED ID: 3GH8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUS MUSCULUS IODOTYROSINE DEIODINASE (IYD) REMARK 900 BOUND TO FMN AND DI-IODOTYROSINE (DIT) DBREF 3GFD A 34 285 UNP Q9DCX8 IYD1_MOUSE 34 285 DBREF 3GFD B 34 285 UNP Q9DCX8 IYD1_MOUSE 34 285 SEQADV 3GFD MET A 33 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS A 286 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS A 287 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS A 288 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS A 289 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS A 290 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS A 291 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD MET B 33 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS B 286 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS B 287 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS B 288 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS B 289 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS B 290 UNP Q9DCX8 EXPRESSION TAG SEQADV 3GFD HIS B 291 UNP Q9DCX8 EXPRESSION TAG SEQRES 1 A 259 MET ALA GLN VAL GLN PRO TRP VAL ASP GLU ASP LEU LYS SEQRES 2 A 259 ASP SER THR GLU ASP LEU GLN VAL GLU GLU ASP ALA GLU SEQRES 3 A 259 GLU TRP GLN GLU ALA GLU GLU SER VAL GLU HIS ILE PRO SEQRES 4 A 259 PHE SER HIS THR ARG TYR PRO GLU GLN GLU MET ARG MET SEQRES 5 A 259 ARG SER GLN GLU PHE TYR GLU LEU LEU ASN LYS ARG ARG SEQRES 6 A 259 SER VAL ARG PHE ILE SER SER GLU HIS VAL PRO MET GLU SEQRES 7 A 259 VAL ILE GLU ASN VAL ILE LYS ALA ALA GLY THR ALA PRO SEQRES 8 A 259 SER GLY ALA HIS THR GLU PRO TRP THR PHE VAL VAL VAL SEQRES 9 A 259 LYS ASP PRO ASP MET LYS HIS LYS ILE ARG GLU ILE ILE SEQRES 10 A 259 GLU GLU GLU GLU GLU ILE ASN TYR MET LYS ARG MET GLY SEQRES 11 A 259 LYS ARG TRP VAL THR ASP LEU LYS LYS LEU ARG THR ASN SEQRES 12 A 259 TRP ILE LYS GLU TYR LEU ASP THR ALA PRO VAL LEU ILE SEQRES 13 A 259 LEU ILE PHE LYS GLN VAL HIS GLY PHE ALA ALA ASN GLY SEQRES 14 A 259 LYS LYS LYS VAL HIS TYR TYR ASN GLU ILE SER VAL SER SEQRES 15 A 259 ILE ALA CYS GLY LEU LEU LEU ALA ALA LEU GLN ASN ALA SEQRES 16 A 259 GLY LEU VAL THR VAL THR THR THR PRO LEU ASN CYS GLY SEQRES 17 A 259 PRO ARG LEU ARG VAL LEU LEU GLY ARG PRO SER HIS GLU SEQRES 18 A 259 LYS LEU LEU VAL LEU LEU PRO VAL GLY TYR PRO SER ARG SEQRES 19 A 259 ASP ALA THR VAL PRO ASP LEU LYS ARG LYS ALA LEU ASP SEQRES 20 A 259 GLN ILE MET VAL THR VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 259 MET ALA GLN VAL GLN PRO TRP VAL ASP GLU ASP LEU LYS SEQRES 2 B 259 ASP SER THR GLU ASP LEU GLN VAL GLU GLU ASP ALA GLU SEQRES 3 B 259 GLU TRP GLN GLU ALA GLU GLU SER VAL GLU HIS ILE PRO SEQRES 4 B 259 PHE SER HIS THR ARG TYR PRO GLU GLN GLU MET ARG MET SEQRES 5 B 259 ARG SER GLN GLU PHE TYR GLU LEU LEU ASN LYS ARG ARG SEQRES 6 B 259 SER VAL ARG PHE ILE SER SER GLU HIS VAL PRO MET GLU SEQRES 7 B 259 VAL ILE GLU ASN VAL ILE LYS ALA ALA GLY THR ALA PRO SEQRES 8 B 259 SER GLY ALA HIS THR GLU PRO TRP THR PHE VAL VAL VAL SEQRES 9 B 259 LYS ASP PRO ASP MET LYS HIS LYS ILE ARG GLU ILE ILE SEQRES 10 B 259 GLU GLU GLU GLU GLU ILE ASN TYR MET LYS ARG MET GLY SEQRES 11 B 259 LYS ARG TRP VAL THR ASP LEU LYS LYS LEU ARG THR ASN SEQRES 12 B 259 TRP ILE LYS GLU TYR LEU ASP THR ALA PRO VAL LEU ILE SEQRES 13 B 259 LEU ILE PHE LYS GLN VAL HIS GLY PHE ALA ALA ASN GLY SEQRES 14 B 259 LYS LYS LYS VAL HIS TYR TYR ASN GLU ILE SER VAL SER SEQRES 15 B 259 ILE ALA CYS GLY LEU LEU LEU ALA ALA LEU GLN ASN ALA SEQRES 16 B 259 GLY LEU VAL THR VAL THR THR THR PRO LEU ASN CYS GLY SEQRES 17 B 259 PRO ARG LEU ARG VAL LEU LEU GLY ARG PRO SER HIS GLU SEQRES 18 B 259 LYS LEU LEU VAL LEU LEU PRO VAL GLY TYR PRO SER ARG SEQRES 19 B 259 ASP ALA THR VAL PRO ASP LEU LYS ARG LYS ALA LEU ASP SEQRES 20 B 259 GLN ILE MET VAL THR VAL HIS HIS HIS HIS HIS HIS HET FMN A 301 31 HET IYR A 302 14 HET GOL A 1 6 HET GOL A 3 6 HET FMN B 301 31 HET IYR B 302 14 HET GOL B 2 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM IYR 3-IODO-TYROSINE HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 IYR 2(C9 H10 I N O3) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 10 HOH *540(H2 O) HELIX 1 1 PRO A 78 LYS A 95 1 18 HELIX 2 2 PRO A 108 GLY A 120 1 13 HELIX 3 3 SER A 124 THR A 128 5 5 HELIX 4 4 ASP A 138 LYS A 159 1 22 HELIX 5 5 GLY A 162 LYS A 170 1 9 HELIX 6 6 LYS A 171 ARG A 173 5 3 HELIX 7 7 GLU A 179 ALA A 184 1 6 HELIX 8 8 TYR A 208 GLY A 228 1 21 HELIX 9 9 CYS A 239 LEU A 247 1 9 HELIX 10 10 ALA A 277 GLN A 280 5 4 HELIX 11 11 PRO B 78 LYS B 95 1 18 HELIX 12 12 PRO B 108 GLY B 120 1 13 HELIX 13 13 SER B 124 THR B 128 5 5 HELIX 14 14 ASP B 138 LYS B 159 1 22 HELIX 15 15 GLY B 162 LYS B 170 1 9 HELIX 16 16 LYS B 171 ARG B 173 5 3 HELIX 17 17 GLU B 179 ALA B 184 1 6 HELIX 18 18 TYR B 208 GLY B 228 1 21 HELIX 19 19 CYS B 239 LEU B 247 1 9 HELIX 20 20 ALA B 277 ILE B 281 1 5 SHEET 1 A 2 HIS A 69 PRO A 71 0 SHEET 2 A 2 THR B 269 PRO B 271 -1 O VAL B 270 N ILE A 70 SHEET 1 B 4 GLU A 253 VAL A 261 0 SHEET 2 B 4 VAL A 186 GLN A 193 -1 N ILE A 190 O LEU A 256 SHEET 3 B 4 TRP A 131 VAL A 136 -1 N VAL A 134 O LEU A 189 SHEET 4 B 4 MET B 282 VAL B 285 1 O VAL B 283 N PHE A 133 SHEET 1 C 2 HIS A 195 GLY A 196 0 SHEET 2 C 2 LYS A 204 VAL A 205 -1 O LYS A 204 N GLY A 196 SHEET 1 D 2 THR A 269 PRO A 271 0 SHEET 2 D 2 HIS B 69 PRO B 71 -1 O ILE B 70 N VAL A 270 SHEET 1 E 4 MET A 282 THR A 284 0 SHEET 2 E 4 TRP B 131 VAL B 136 1 O VAL B 135 N VAL A 283 SHEET 3 E 4 VAL B 186 GLN B 193 -1 O LEU B 189 N VAL B 134 SHEET 4 E 4 GLU B 253 VAL B 261 -1 O LEU B 259 N ILE B 188 SHEET 1 F 2 HIS B 195 GLY B 196 0 SHEET 2 F 2 LYS B 204 VAL B 205 -1 O LYS B 204 N GLY B 196 CISPEP 1 SER A 66 VAL A 67 0 25.77 CISPEP 2 VAL B 285 HIS B 286 0 -24.21 SITE 1 AC1 18 HOH A 15 HOH A 17 ARG A 96 ARG A 97 SITE 2 AC1 18 SER A 98 ARG A 100 THR A 174 VAL A 232 SITE 3 AC1 18 THR A 233 THR A 235 ARG A 275 IYR A 302 SITE 4 AC1 18 HOH A 372 HOH A 395 PRO B 123 SER B 124 SITE 5 AC1 18 GLY B 125 HOH B 553 SITE 1 AC2 12 GLU A 153 TYR A 157 LEU A 169 THR A 174 SITE 2 AC2 12 ASN A 175 LYS A 178 THR A 235 FMN A 301 SITE 3 AC2 12 HOH A 356 HOH A 400 GLY B 125 ALA B 126 SITE 1 AC3 7 TYR A 207 TYR A 208 HOH A 331 HOH A 411 SITE 2 AC3 7 HOH A 415 HOH A 462 TRP B 165 SITE 1 AC4 7 ARG A 76 TYR A 77 GLU A 81 TYR A 157 SITE 2 AC4 7 MET A 158 VAL A 166 LYS A 170 SITE 1 AC5 23 PRO A 123 SER A 124 GLY A 125 TYR A 208 SITE 2 AC5 23 ILE A 211 ILE A 215 HOH A 416 HOH B 13 SITE 3 AC5 23 ARG B 96 ARG B 97 SER B 98 ARG B 100 SITE 4 AC5 23 LEU B 172 VAL B 232 THR B 233 THR B 234 SITE 5 AC5 23 THR B 235 LEU B 273 ARG B 275 IYR B 302 SITE 6 AC5 23 HOH B 308 HOH B 333 HOH B 550 SITE 1 AC6 14 GLY A 125 ALA A 126 TYR A 207 GLU B 153 SITE 2 AC6 14 TYR B 157 MET B 161 LEU B 169 LEU B 172 SITE 3 AC6 14 ASN B 175 LYS B 178 THR B 235 FMN B 301 SITE 4 AC6 14 HOH B 314 HOH B 320 SITE 1 AC7 4 LEU A 237 TYR B 207 TYR B 208 HOH B 532 CRYST1 105.187 105.187 162.124 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009507 0.005489 0.000000 0.00000 SCALE2 0.000000 0.010978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006168 0.00000