HEADER HYDROLASE 26-FEB-09 3GFF TITLE CRYSTAL STRUCTURE OF IROE-LIKE SERINE HYDROLASE (NP_718593.1) FROM TITLE 2 SHEWANELLA ONEIDENSIS AT 2.12 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IROE-LIKE SERINE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: NP_718593.1, SO_3025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_718593.1, IROE-LIKE SERINE HYDROLASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, PUTATIVE ESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GFF 1 REMARK SEQADV REVDAT 4 24-JUL-19 3GFF 1 REMARK LINK REVDAT 3 25-OCT-17 3GFF 1 REMARK REVDAT 2 13-JUL-11 3GFF 1 VERSN REVDAT 1 10-MAR-09 3GFF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF IROE-LIKE SERINE HYDROLASE JRNL TITL 2 (NP_718593.1) FROM SHEWANELLA ONEIDENSIS AT 2.12 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 33377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4985 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5138 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3474 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6956 ; 1.614 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8459 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ; 3.620 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;32.710 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 855 ;13.858 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5746 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1074 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1065 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3530 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2487 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2511 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 313 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.358 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3246 ; 0.982 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1282 ; 0.276 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5042 ; 1.416 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2151 ; 1.007 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1912 ; 1.457 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 328 4 REMARK 3 1 B 10 B 328 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 4151 ; 0.350 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 4151 ; 0.630 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8403 62.0656 34.0691 REMARK 3 T TENSOR REMARK 3 T11: -0.1124 T22: -0.1198 REMARK 3 T33: -0.0796 T12: 0.0063 REMARK 3 T13: -0.0091 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.0989 L22: 1.2772 REMARK 3 L33: 1.9076 L12: 0.0417 REMARK 3 L13: -0.4419 L23: -0.2524 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0889 S13: -0.0111 REMARK 3 S21: -0.0668 S22: 0.0051 S23: -0.0211 REMARK 3 S31: 0.0598 S32: -0.0018 S33: 0.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 328 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6944 29.4571 34.4495 REMARK 3 T TENSOR REMARK 3 T11: -0.0888 T22: -0.1018 REMARK 3 T33: -0.0667 T12: -0.0035 REMARK 3 T13: 0.0058 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.0730 L22: 1.2692 REMARK 3 L33: 1.5044 L12: -0.1103 REMARK 3 L13: 0.3422 L23: 0.4345 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.0890 S13: 0.0082 REMARK 3 S21: 0.1360 S22: -0.0329 S23: 0.0254 REMARK 3 S31: -0.0146 S32: -0.0436 S33: 0.0501 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.IMIDAZOLE REMARK 3 (IMD) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION CONDITION HAVE REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. 5.RESIDUES A314 AND B314 REMARK 3 ARE RAMACHANDRAN OUTLIERS IN A REGION OF POOR ELECTRON DENSITY. REMARK 3 6.THE NOMINAL RESOLUTION IS 2.25 A WITH 5447 OBSERVED REMARK 3 REFLECTIONS BETWEEN 2.25-2.12 (89.2% COMPLETE FOR THIS SHELL) REMARK 3 INCLUDED IN THE REFINEMENT. REMARK 4 REMARK 4 3GFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97824,0.97864 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 28.307 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0000% ETHANOL, 0.2000M MGCL2, 0.1M REMARK 280 IMIDAZOLE PH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.78500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND STATIC LIGHT SCATTERING REMARK 300 SUPPORT THE ASSIGNMENT OF A DIMER AS THE REMARK 300 STABLE OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 SER A 271 REMARK 465 ASP A 272 REMARK 465 SER A 273 REMARK 465 LYS A 329 REMARK 465 ASP A 330 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 SER B 271 REMARK 465 ASP B 272 REMARK 465 SER B 273 REMARK 465 LYS B 329 REMARK 465 ASP B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 269 CG1 CG2 CD1 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLN A 306 CD OE1 NE2 REMARK 470 TYR A 307 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 309 CB CG OD1 OD2 REMARK 470 ARG A 310 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 ILE B 269 CB CG1 CG2 CD1 REMARK 470 GLN B 298 CG CD OE1 NE2 REMARK 470 TYR B 307 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 309 CB CG OD1 OD2 REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 LYS B 317 CG CD CE NZ REMARK 470 GLN B 318 CG CD OE1 NE2 REMARK 470 ARG B 324 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 325 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 62 O HOH A 415 1.93 REMARK 500 O GLU B 10 O HOH B 620 2.16 REMARK 500 OG SER B 162 O HOH B 619 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 83 -81.65 -120.86 REMARK 500 GLU A 123 -61.37 -122.31 REMARK 500 SER A 144 -130.04 60.45 REMARK 500 SER A 212 139.71 -171.65 REMARK 500 ILE A 269 31.07 -81.45 REMARK 500 THR A 314 -146.52 35.41 REMARK 500 THR B 83 -78.55 -116.16 REMARK 500 GLU B 123 -59.53 -122.71 REMARK 500 SER B 144 -125.58 61.17 REMARK 500 ASN B 202 55.15 -112.55 REMARK 500 ALA B 230 63.82 35.69 REMARK 500 ILE B 269 2.29 -60.47 REMARK 500 GLN B 312 19.68 47.62 REMARK 500 LEU B 313 98.36 -63.76 REMARK 500 THR B 314 -166.50 40.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379975 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GFF A 1 330 UNP Q8ECU8 Q8ECU8_SHEON 1 330 DBREF 3GFF B 1 330 UNP Q8ECU8 Q8ECU8_SHEON 1 330 SEQADV 3GFF GLY A 0 UNP Q8ECU8 EXPRESSION TAG SEQADV 3GFF GLY B 0 UNP Q8ECU8 EXPRESSION TAG SEQRES 1 A 331 GLY MSE THR SER THR SER ILE THR ALA VAL GLU TYR GLN SEQRES 2 A 331 SER LYS ARG LEU GLU SER ARG LEU LEU LYS GLU THR ARG SEQRES 3 A 331 GLU TYR VAL ILE ALA LEU PRO GLU GLY TYR ALA GLN SER SEQRES 4 A 331 LEU GLU ALA TYR PRO VAL VAL TYR LEU LEU ASP GLY GLU SEQRES 5 A 331 ASP GLN PHE ASP HIS MSE ALA SER LEU LEU GLN PHE LEU SEQRES 6 A 331 SER GLN GLY THR MSE PRO GLN ILE PRO LYS VAL ILE ILE SEQRES 7 A 331 VAL GLY ILE HIS ASN THR ASN ARG MSE ARG ASP TYR THR SEQRES 8 A 331 PRO THR HIS THR LEU VAL LEU PRO SER GLY ASN LYS GLY SEQRES 9 A 331 ASN PRO GLN TYR GLN HIS THR GLY GLY ALA GLY ARG PHE SEQRES 10 A 331 LEU ASP PHE ILE GLU LYS GLU LEU ALA PRO SER ILE GLU SEQRES 11 A 331 SER GLN LEU ARG THR ASN GLY ILE ASN VAL LEU VAL GLY SEQRES 12 A 331 HIS SER PHE GLY GLY LEU VAL ALA MSE GLU ALA LEU ARG SEQRES 13 A 331 THR ASP ARG PRO LEU PHE SER ALA TYR LEU ALA LEU ASP SEQRES 14 A 331 THR SER LEU TRP PHE ASP SER PRO HIS TYR LEU THR LEU SEQRES 15 A 331 LEU GLU GLU ARG VAL VAL LYS GLY ASP PHE LYS GLN LYS SEQRES 16 A 331 GLN LEU PHE MSE ALA ILE ALA ASN ASN PRO LEU SER PRO SEQRES 17 A 331 GLY PHE GLY VAL SER SER TYR HIS LYS ASP LEU ASN LEU SEQRES 18 A 331 ALA PHE ALA ASP LYS LEU THR LYS LEU ALA PRO LYS GLY SEQRES 19 A 331 LEU GLY PHE MSE ALA LYS TYR TYR PRO GLU GLU THR HIS SEQRES 20 A 331 GLN SER VAL SER HIS ILE GLY LEU TYR ASP GLY ILE ARG SEQRES 21 A 331 HIS LEU PHE LYS ASP PHE ALA ILE ASP ILE TYR SER ASP SEQRES 22 A 331 SER PHE SER LYS GLN GLN VAL ILE ASP GLN TYR GLY VAL SEQRES 23 A 331 LEU SER GLU ARG PHE GLY HIS LYS VAL THR PRO SER GLN SEQRES 24 A 331 GLN TYR LEU GLU GLN LEU ILE GLN TYR SER ASP ARG GLN SEQRES 25 A 331 GLN LEU THR GLU ARG LYS GLN MSE LEU GLU GLY LEU ARG SEQRES 26 A 331 GLN HIS PHE ALA LYS ASP SEQRES 1 B 331 GLY MSE THR SER THR SER ILE THR ALA VAL GLU TYR GLN SEQRES 2 B 331 SER LYS ARG LEU GLU SER ARG LEU LEU LYS GLU THR ARG SEQRES 3 B 331 GLU TYR VAL ILE ALA LEU PRO GLU GLY TYR ALA GLN SER SEQRES 4 B 331 LEU GLU ALA TYR PRO VAL VAL TYR LEU LEU ASP GLY GLU SEQRES 5 B 331 ASP GLN PHE ASP HIS MSE ALA SER LEU LEU GLN PHE LEU SEQRES 6 B 331 SER GLN GLY THR MSE PRO GLN ILE PRO LYS VAL ILE ILE SEQRES 7 B 331 VAL GLY ILE HIS ASN THR ASN ARG MSE ARG ASP TYR THR SEQRES 8 B 331 PRO THR HIS THR LEU VAL LEU PRO SER GLY ASN LYS GLY SEQRES 9 B 331 ASN PRO GLN TYR GLN HIS THR GLY GLY ALA GLY ARG PHE SEQRES 10 B 331 LEU ASP PHE ILE GLU LYS GLU LEU ALA PRO SER ILE GLU SEQRES 11 B 331 SER GLN LEU ARG THR ASN GLY ILE ASN VAL LEU VAL GLY SEQRES 12 B 331 HIS SER PHE GLY GLY LEU VAL ALA MSE GLU ALA LEU ARG SEQRES 13 B 331 THR ASP ARG PRO LEU PHE SER ALA TYR LEU ALA LEU ASP SEQRES 14 B 331 THR SER LEU TRP PHE ASP SER PRO HIS TYR LEU THR LEU SEQRES 15 B 331 LEU GLU GLU ARG VAL VAL LYS GLY ASP PHE LYS GLN LYS SEQRES 16 B 331 GLN LEU PHE MSE ALA ILE ALA ASN ASN PRO LEU SER PRO SEQRES 17 B 331 GLY PHE GLY VAL SER SER TYR HIS LYS ASP LEU ASN LEU SEQRES 18 B 331 ALA PHE ALA ASP LYS LEU THR LYS LEU ALA PRO LYS GLY SEQRES 19 B 331 LEU GLY PHE MSE ALA LYS TYR TYR PRO GLU GLU THR HIS SEQRES 20 B 331 GLN SER VAL SER HIS ILE GLY LEU TYR ASP GLY ILE ARG SEQRES 21 B 331 HIS LEU PHE LYS ASP PHE ALA ILE ASP ILE TYR SER ASP SEQRES 22 B 331 SER PHE SER LYS GLN GLN VAL ILE ASP GLN TYR GLY VAL SEQRES 23 B 331 LEU SER GLU ARG PHE GLY HIS LYS VAL THR PRO SER GLN SEQRES 24 B 331 GLN TYR LEU GLU GLN LEU ILE GLN TYR SER ASP ARG GLN SEQRES 25 B 331 GLN LEU THR GLU ARG LYS GLN MSE LEU GLU GLY LEU ARG SEQRES 26 B 331 GLN HIS PHE ALA LYS ASP MODRES 3GFF MSE A 57 MET SELENOMETHIONINE MODRES 3GFF MSE A 69 MET SELENOMETHIONINE MODRES 3GFF MSE A 86 MET SELENOMETHIONINE MODRES 3GFF MSE A 151 MET SELENOMETHIONINE MODRES 3GFF MSE A 198 MET SELENOMETHIONINE MODRES 3GFF MSE A 237 MET SELENOMETHIONINE MODRES 3GFF MSE A 319 MET SELENOMETHIONINE MODRES 3GFF MSE B 57 MET SELENOMETHIONINE MODRES 3GFF MSE B 69 MET SELENOMETHIONINE MODRES 3GFF MSE B 86 MET SELENOMETHIONINE MODRES 3GFF MSE B 151 MET SELENOMETHIONINE MODRES 3GFF MSE B 198 MET SELENOMETHIONINE MODRES 3GFF MSE B 237 MET SELENOMETHIONINE MODRES 3GFF MSE B 319 MET SELENOMETHIONINE HET MSE A 57 8 HET MSE A 69 8 HET MSE A 86 8 HET MSE A 151 8 HET MSE A 198 8 HET MSE A 237 8 HET MSE A 319 8 HET MSE B 57 8 HET MSE B 69 8 HET MSE B 86 8 HET MSE B 151 8 HET MSE B 198 8 HET MSE B 237 8 HET MSE B 319 8 HET CL A 331 1 HET IMD A 332 5 HET CL B 331 1 HET IMD B 332 5 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 IMD 2(C3 H5 N2 1+) FORMUL 7 HOH *289(H2 O) HELIX 1 1 GLY A 34 SER A 38 5 5 HELIX 2 2 ASP A 49 SER A 65 1 17 HELIX 3 3 ASN A 84 TYR A 89 1 6 HELIX 4 4 ASN A 104 THR A 110 5 7 HELIX 5 5 GLY A 112 GLU A 123 1 12 HELIX 6 6 GLU A 123 LEU A 132 1 10 HELIX 7 7 PHE A 145 THR A 156 1 12 HELIX 8 8 PRO A 176 GLY A 189 1 14 HELIX 9 9 SER A 213 ALA A 230 1 18 HELIX 10 10 SER A 248 LYS A 263 1 16 HELIX 11 11 ASP A 264 ALA A 266 5 3 HELIX 12 12 SER A 275 GLY A 291 1 17 HELIX 13 13 SER A 297 GLN A 311 1 15 HELIX 14 14 GLU A 315 PHE A 327 1 13 HELIX 15 15 GLY B 34 SER B 38 5 5 HELIX 16 16 ASP B 49 GLN B 66 1 18 HELIX 17 17 ASN B 84 TYR B 89 1 6 HELIX 18 18 ASN B 104 THR B 110 5 7 HELIX 19 19 GLY B 112 GLU B 123 1 12 HELIX 20 20 GLU B 123 LEU B 132 1 10 HELIX 21 21 PHE B 145 THR B 156 1 12 HELIX 22 22 PRO B 176 GLY B 189 1 14 HELIX 23 23 SER B 213 ALA B 230 1 18 HELIX 24 24 SER B 248 PHE B 262 1 15 HELIX 25 25 LYS B 263 ALA B 266 5 4 HELIX 26 26 SER B 275 GLY B 291 1 17 HELIX 27 27 SER B 297 GLN B 311 1 15 HELIX 28 28 LEU B 313 PHE B 327 1 15 SHEET 1 A 8 GLN A 12 SER A 18 0 SHEET 2 A 8 GLU A 23 ALA A 30 -1 O TYR A 27 N LYS A 14 SHEET 3 A 8 ILE A 76 ILE A 80 -1 O GLY A 79 N VAL A 28 SHEET 4 A 8 TYR A 42 LEU A 47 1 N LEU A 47 O VAL A 78 SHEET 5 A 8 THR A 134 HIS A 143 1 O VAL A 139 N TYR A 46 SHEET 6 A 8 ALA A 163 LEU A 167 1 O LEU A 167 N GLY A 142 SHEET 7 A 8 LYS A 194 ILE A 200 1 O PHE A 197 N ALA A 166 SHEET 8 A 8 LEU A 234 TYR A 240 1 O GLY A 235 N LYS A 194 SHEET 1 B 2 LEU A 205 SER A 206 0 SHEET 2 B 2 GLY A 210 VAL A 211 -1 O GLY A 210 N SER A 206 SHEET 1 C 8 TYR B 11 SER B 18 0 SHEET 2 C 8 GLU B 23 ALA B 30 -1 O TYR B 27 N LYS B 14 SHEET 3 C 8 ILE B 76 ILE B 80 -1 O GLY B 79 N VAL B 28 SHEET 4 C 8 TYR B 42 LEU B 47 1 N LEU B 47 O VAL B 78 SHEET 5 C 8 THR B 134 HIS B 143 1 O VAL B 139 N TYR B 46 SHEET 6 C 8 ALA B 163 LEU B 167 1 O LEU B 167 N GLY B 142 SHEET 7 C 8 LYS B 194 ALA B 201 1 O PHE B 197 N ALA B 166 SHEET 8 C 8 LEU B 234 TYR B 241 1 O GLY B 235 N LEU B 196 SHEET 1 D 2 LEU B 205 SER B 206 0 SHEET 2 D 2 GLY B 210 VAL B 211 -1 O GLY B 210 N SER B 206 LINK C HIS A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N ALA A 58 1555 1555 1.34 LINK C THR A 68 N MSE A 69 1555 1555 1.34 LINK C MSE A 69 N PRO A 70 1555 1555 1.36 LINK C ARG A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N ARG A 87 1555 1555 1.31 LINK C ALA A 150 N MSE A 151 1555 1555 1.34 LINK C MSE A 151 N GLU A 152 1555 1555 1.34 LINK C PHE A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N ALA A 199 1555 1555 1.33 LINK C PHE A 236 N MSE A 237 1555 1555 1.31 LINK C MSE A 237 N ALA A 238 1555 1555 1.33 LINK C GLN A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N LEU A 320 1555 1555 1.33 LINK C HIS B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N ALA B 58 1555 1555 1.33 LINK C THR B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N PRO B 70 1555 1555 1.34 LINK C ARG B 85 N MSE B 86 1555 1555 1.32 LINK C MSE B 86 N ARG B 87 1555 1555 1.33 LINK C ALA B 150 N MSE B 151 1555 1555 1.33 LINK C MSE B 151 N GLU B 152 1555 1555 1.32 LINK C PHE B 197 N MSE B 198 1555 1555 1.32 LINK C MSE B 198 N ALA B 199 1555 1555 1.32 LINK C PHE B 236 N MSE B 237 1555 1555 1.33 LINK C MSE B 237 N ALA B 238 1555 1555 1.33 LINK C GLN B 318 N MSE B 319 1555 1555 1.33 LINK C MSE B 319 N LEU B 320 1555 1555 1.33 CISPEP 1 SER A 175 PRO A 176 0 4.47 CISPEP 2 SER B 175 PRO B 176 0 2.58 SITE 1 AC1 3 ARG A 185 PHE A 191 LYS A 192 SITE 1 AC2 3 ASP B 157 LYS B 192 HOH B 349 SITE 1 AC3 5 SER A 144 SER A 170 TRP A 172 PRO A 207 SITE 2 AC3 5 HIS A 246 SITE 1 AC4 5 SER B 170 TRP B 172 PRO B 207 HIS B 215 SITE 2 AC4 5 HIS B 246 CRYST1 53.650 125.570 56.750 90.00 117.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018639 0.000000 0.009884 0.00000 SCALE2 0.000000 0.007964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019946 0.00000