data_3GFP # _entry.id 3GFP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GFP RCSB RCSB051801 WWPDB D_1000051801 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GFP _pdbx_database_status.recvd_initial_deposition_date 2009-02-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Erzberger, J.P.' 1 'Dossani, Z.Y.' 2 'Weirich, C.S.' 3 'Weis, K.' 4 'Berger, J.M.' 5 # _citation.id primary _citation.title 'Structure of the C-terminus of the mRNA export factor Dbp5 reveals the interaction surface for the ATPase activator Gle1' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 16251 _citation.page_last 16256 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19805289 _citation.pdbx_database_id_DOI 10.1073/pnas.0902251106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dossani, Z.Y.' 1 primary 'Weirich, C.S.' 2 primary 'Erzberger, J.P.' 3 primary 'Berger, J.M.' 4 primary 'Weis, K.' 5 # _cell.entry_id 3GFP _cell.length_a 82.423 _cell.length_b 82.423 _cell.length_c 56.578 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GFP _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DEAD box protein 5' 21367.734 1 3.6.1.- ? 'Helicase C-terminal domain' ? 2 water nat water 18.015 153 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ATP-dependent RNA helicase DBP5, Helicase CA5/6, Ribonucleic acid-trafficking protein 8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GATNEVNVDAIKQLY(MSE)DCKNEADKFDVLTELYGL(MSE)TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQ TQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS(MSE)VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH DKNSFNILSAIQKYFGDIE(MSE)TRVPTDDWDEVEKIVKKVLKD ; _entity_poly.pdbx_seq_one_letter_code_can ;GATNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI DDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQ KYFGDIEMTRVPTDDWDEVEKIVKKVLKD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 THR n 1 4 ASN n 1 5 GLU n 1 6 VAL n 1 7 ASN n 1 8 VAL n 1 9 ASP n 1 10 ALA n 1 11 ILE n 1 12 LYS n 1 13 GLN n 1 14 LEU n 1 15 TYR n 1 16 MSE n 1 17 ASP n 1 18 CYS n 1 19 LYS n 1 20 ASN n 1 21 GLU n 1 22 ALA n 1 23 ASP n 1 24 LYS n 1 25 PHE n 1 26 ASP n 1 27 VAL n 1 28 LEU n 1 29 THR n 1 30 GLU n 1 31 LEU n 1 32 TYR n 1 33 GLY n 1 34 LEU n 1 35 MSE n 1 36 THR n 1 37 ILE n 1 38 GLY n 1 39 SER n 1 40 SER n 1 41 ILE n 1 42 ILE n 1 43 PHE n 1 44 VAL n 1 45 ALA n 1 46 THR n 1 47 LYS n 1 48 LYS n 1 49 THR n 1 50 ALA n 1 51 ASN n 1 52 VAL n 1 53 LEU n 1 54 TYR n 1 55 GLY n 1 56 LYS n 1 57 LEU n 1 58 LYS n 1 59 SER n 1 60 GLU n 1 61 GLY n 1 62 HIS n 1 63 GLU n 1 64 VAL n 1 65 SER n 1 66 ILE n 1 67 LEU n 1 68 HIS n 1 69 GLY n 1 70 ASP n 1 71 LEU n 1 72 GLN n 1 73 THR n 1 74 GLN n 1 75 GLU n 1 76 ARG n 1 77 ASP n 1 78 ARG n 1 79 LEU n 1 80 ILE n 1 81 ASP n 1 82 ASP n 1 83 PHE n 1 84 ARG n 1 85 GLU n 1 86 GLY n 1 87 ARG n 1 88 SER n 1 89 LYS n 1 90 VAL n 1 91 LEU n 1 92 ILE n 1 93 THR n 1 94 THR n 1 95 ASN n 1 96 VAL n 1 97 LEU n 1 98 ALA n 1 99 ARG n 1 100 GLY n 1 101 ILE n 1 102 ASP n 1 103 ILE n 1 104 PRO n 1 105 THR n 1 106 VAL n 1 107 SER n 1 108 MSE n 1 109 VAL n 1 110 VAL n 1 111 ASN n 1 112 TYR n 1 113 ASP n 1 114 LEU n 1 115 PRO n 1 116 THR n 1 117 LEU n 1 118 ALA n 1 119 ASN n 1 120 GLY n 1 121 GLN n 1 122 ALA n 1 123 ASP n 1 124 PRO n 1 125 ALA n 1 126 THR n 1 127 TYR n 1 128 ILE n 1 129 HIS n 1 130 ARG n 1 131 ILE n 1 132 GLY n 1 133 ARG n 1 134 THR n 1 135 GLY n 1 136 ARG n 1 137 PHE n 1 138 GLY n 1 139 ARG n 1 140 LYS n 1 141 GLY n 1 142 VAL n 1 143 ALA n 1 144 ILE n 1 145 SER n 1 146 PHE n 1 147 VAL n 1 148 HIS n 1 149 ASP n 1 150 LYS n 1 151 ASN n 1 152 SER n 1 153 PHE n 1 154 ASN n 1 155 ILE n 1 156 LEU n 1 157 SER n 1 158 ALA n 1 159 ILE n 1 160 GLN n 1 161 LYS n 1 162 TYR n 1 163 PHE n 1 164 GLY n 1 165 ASP n 1 166 ILE n 1 167 GLU n 1 168 MSE n 1 169 THR n 1 170 ARG n 1 171 VAL n 1 172 PRO n 1 173 THR n 1 174 ASP n 1 175 ASP n 1 176 TRP n 1 177 ASP n 1 178 GLU n 1 179 VAL n 1 180 GLU n 1 181 LYS n 1 182 ILE n 1 183 VAL n 1 184 LYS n 1 185 LYS n 1 186 VAL n 1 187 LEU n 1 188 LYS n 1 189 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DBP5, RAT8, YOR046C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3 RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DBP5_YEAST _struct_ref.pdbx_db_accession P20449 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY FGDIEMTRVPTDDWDEVEKIVKKVLKD ; _struct_ref.pdbx_align_begin 296 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GFP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20449 _struct_ref_seq.db_align_beg 296 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 482 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 296 _struct_ref_seq.pdbx_auth_seq_align_end 482 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GFP GLY A 1 ? UNP P20449 ? ? 'EXPRESSION TAG' 294 1 1 3GFP ALA A 2 ? UNP P20449 ? ? 'EXPRESSION TAG' 295 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GFP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_percent_sol 52.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '2M Na/K HPO4, 100mM Na cacodylate pH 6.5, 8% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-11-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 1.0332 1.0 3 1.11588 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795,1.0332,1.11588 # _reflns.entry_id 3GFP _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 56.6 _reflns.d_resolution_high 1.7 _reflns.number_obs 24212 _reflns.number_all 24212 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 25.7 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3GFP _refine.ls_number_reflns_obs 19340 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.19315 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19130 _refine.ls_R_factor_R_free 0.22999 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1016 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 29.957 _refine.aniso_B[1][1] -0.82 _refine.aniso_B[2][2] -0.82 _refine.aniso_B[3][3] 1.23 _refine.aniso_B[1][2] -0.41 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.076 _refine.overall_SU_B 5.320 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1422 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 1575 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1451 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.956 1.959 ? 1959 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.219 5.000 ? 180 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.504 24.242 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.028 15.000 ? 268 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.491 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 228 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1069 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 738 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 1022 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.146 0.200 ? 119 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.156 0.200 ? 57 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.149 0.200 ? 22 'X-RAY DIFFRACTION' ? r_mcbond_it 0.851 1.500 ? 919 'X-RAY DIFFRACTION' ? r_mcangle_it 1.251 2.000 ? 1454 'X-RAY DIFFRACTION' ? r_scbond_it 2.011 3.000 ? 588 'X-RAY DIFFRACTION' ? r_scangle_it 2.965 4.500 ? 505 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1404 _refine_ls_shell.R_factor_R_work 0.230 _refine_ls_shell.percent_reflns_obs 99.73 _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GFP _struct.title 'Structure of the C-terminal domain of the DEAD-box protein Dbp5' _struct.pdbx_descriptor 'DEAD box protein 5 (E.C.3.6.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GFP _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;mRNA export, ATPase, RecA-fold, ATP-binding, Helicase, Hydrolase, Membrane, mRNA transport, Nuclear pore complex, Nucleotide-binding, Nucleus, Phosphoprotein, Protein transport, RNA-binding, Translocation, Transport ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 22 ? MSE A 35 ? ALA A 315 MSE A 328 1 ? 14 HELX_P HELX_P2 2 THR A 46 ? GLU A 60 ? THR A 339 GLU A 353 1 ? 15 HELX_P HELX_P3 3 GLN A 72 ? GLY A 86 ? GLN A 365 GLY A 379 1 ? 15 HELX_P HELX_P4 4 ASP A 123 ? GLY A 132 ? ASP A 416 GLY A 425 1 ? 10 HELX_P HELX_P5 5 ASP A 149 ? PHE A 163 ? ASP A 442 PHE A 456 1 ? 15 HELX_P HELX_P6 6 ASP A 175 ? VAL A 186 ? ASP A 468 VAL A 479 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 15 C ? ? ? 1_555 A MSE 16 N ? ? A TYR 308 A MSE 309 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A ASP 17 N ? ? A MSE 309 A ASP 310 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A LEU 34 C ? ? ? 1_555 A MSE 35 N ? ? A LEU 327 A MSE 328 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 35 C ? ? ? 1_555 A THR 36 N ? ? A MSE 328 A THR 329 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A SER 107 C ? ? ? 1_555 A MSE 108 N ? ? A SER 400 A MSE 401 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 108 C ? ? ? 1_555 A VAL 109 N ? ? A MSE 401 A VAL 402 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A GLU 167 C ? ? ? 1_555 A MSE 168 N ? ? A GLU 460 A MSE 461 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 168 C ? ? ? 1_555 A THR 169 N ? ? A MSE 461 A THR 462 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 64 ? LEU A 67 ? VAL A 357 LEU A 360 A 2 VAL A 90 ? THR A 94 ? VAL A 383 THR A 387 A 3 SER A 40 ? VAL A 44 ? SER A 333 VAL A 337 A 4 MSE A 108 ? ASN A 111 ? MSE A 401 ASN A 404 A 5 VAL A 142 ? VAL A 147 ? VAL A 435 VAL A 440 A 6 LYS A 12 ? ASP A 17 ? LYS A 305 ASP A 310 A 7 THR A 169 ? PRO A 172 ? THR A 462 PRO A 465 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 67 ? N LEU A 360 O ILE A 92 ? O ILE A 385 A 2 3 O LEU A 91 ? O LEU A 384 N ILE A 42 ? N ILE A 335 A 3 4 N ILE A 41 ? N ILE A 334 O VAL A 110 ? O VAL A 403 A 4 5 N VAL A 109 ? N VAL A 402 O ILE A 144 ? O ILE A 437 A 5 6 O SER A 145 ? O SER A 438 N MSE A 16 ? N MSE A 309 A 6 7 N TYR A 15 ? N TYR A 308 O VAL A 171 ? O VAL A 464 # _database_PDB_matrix.entry_id 3GFP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GFP _atom_sites.fract_transf_matrix[1][1] 0.012133 _atom_sites.fract_transf_matrix[1][2] 0.007005 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017675 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 294 ? ? ? A . n A 1 2 ALA 2 295 ? ? ? A . n A 1 3 THR 3 296 ? ? ? A . n A 1 4 ASN 4 297 ? ? ? A . n A 1 5 GLU 5 298 ? ? ? A . n A 1 6 VAL 6 299 ? ? ? A . n A 1 7 ASN 7 300 300 ASN ASN A . n A 1 8 VAL 8 301 301 VAL VAL A . n A 1 9 ASP 9 302 302 ASP ASP A . n A 1 10 ALA 10 303 303 ALA ALA A . n A 1 11 ILE 11 304 304 ILE ILE A . n A 1 12 LYS 12 305 305 LYS LYS A . n A 1 13 GLN 13 306 306 GLN GLN A . n A 1 14 LEU 14 307 307 LEU LEU A . n A 1 15 TYR 15 308 308 TYR TYR A . n A 1 16 MSE 16 309 309 MSE MSE A . n A 1 17 ASP 17 310 310 ASP ASP A . n A 1 18 CYS 18 311 311 CYS CYS A . n A 1 19 LYS 19 312 312 LYS LYS A . n A 1 20 ASN 20 313 313 ASN ASN A . n A 1 21 GLU 21 314 314 GLU GLU A . n A 1 22 ALA 22 315 315 ALA ALA A . n A 1 23 ASP 23 316 316 ASP ASP A . n A 1 24 LYS 24 317 317 LYS LYS A . n A 1 25 PHE 25 318 318 PHE PHE A . n A 1 26 ASP 26 319 319 ASP ASP A . n A 1 27 VAL 27 320 320 VAL VAL A . n A 1 28 LEU 28 321 321 LEU LEU A . n A 1 29 THR 29 322 322 THR THR A . n A 1 30 GLU 30 323 323 GLU GLU A . n A 1 31 LEU 31 324 324 LEU LEU A . n A 1 32 TYR 32 325 325 TYR TYR A . n A 1 33 GLY 33 326 326 GLY GLY A . n A 1 34 LEU 34 327 327 LEU LEU A . n A 1 35 MSE 35 328 328 MSE MSE A . n A 1 36 THR 36 329 329 THR THR A . n A 1 37 ILE 37 330 330 ILE ILE A . n A 1 38 GLY 38 331 331 GLY GLY A . n A 1 39 SER 39 332 332 SER SER A . n A 1 40 SER 40 333 333 SER SER A . n A 1 41 ILE 41 334 334 ILE ILE A . n A 1 42 ILE 42 335 335 ILE ILE A . n A 1 43 PHE 43 336 336 PHE PHE A . n A 1 44 VAL 44 337 337 VAL VAL A . n A 1 45 ALA 45 338 338 ALA ALA A . n A 1 46 THR 46 339 339 THR THR A . n A 1 47 LYS 47 340 340 LYS LYS A . n A 1 48 LYS 48 341 341 LYS LYS A . n A 1 49 THR 49 342 342 THR THR A . n A 1 50 ALA 50 343 343 ALA ALA A . n A 1 51 ASN 51 344 344 ASN ASN A . n A 1 52 VAL 52 345 345 VAL VAL A . n A 1 53 LEU 53 346 346 LEU LEU A . n A 1 54 TYR 54 347 347 TYR TYR A . n A 1 55 GLY 55 348 348 GLY GLY A . n A 1 56 LYS 56 349 349 LYS LYS A . n A 1 57 LEU 57 350 350 LEU LEU A . n A 1 58 LYS 58 351 351 LYS LYS A . n A 1 59 SER 59 352 352 SER SER A . n A 1 60 GLU 60 353 353 GLU GLU A . n A 1 61 GLY 61 354 354 GLY GLY A . n A 1 62 HIS 62 355 355 HIS HIS A . n A 1 63 GLU 63 356 356 GLU GLU A . n A 1 64 VAL 64 357 357 VAL VAL A . n A 1 65 SER 65 358 358 SER SER A . n A 1 66 ILE 66 359 359 ILE ILE A . n A 1 67 LEU 67 360 360 LEU LEU A . n A 1 68 HIS 68 361 361 HIS HIS A . n A 1 69 GLY 69 362 362 GLY GLY A . n A 1 70 ASP 70 363 363 ASP ASP A . n A 1 71 LEU 71 364 364 LEU LEU A . n A 1 72 GLN 72 365 365 GLN GLN A . n A 1 73 THR 73 366 366 THR THR A . n A 1 74 GLN 74 367 367 GLN GLN A . n A 1 75 GLU 75 368 368 GLU GLU A . n A 1 76 ARG 76 369 369 ARG ARG A . n A 1 77 ASP 77 370 370 ASP ASP A . n A 1 78 ARG 78 371 371 ARG ARG A . n A 1 79 LEU 79 372 372 LEU LEU A . n A 1 80 ILE 80 373 373 ILE ILE A . n A 1 81 ASP 81 374 374 ASP ASP A . n A 1 82 ASP 82 375 375 ASP ASP A . n A 1 83 PHE 83 376 376 PHE PHE A . n A 1 84 ARG 84 377 377 ARG ARG A . n A 1 85 GLU 85 378 378 GLU GLU A . n A 1 86 GLY 86 379 379 GLY GLY A . n A 1 87 ARG 87 380 380 ARG ARG A . n A 1 88 SER 88 381 381 SER SER A . n A 1 89 LYS 89 382 382 LYS LYS A . n A 1 90 VAL 90 383 383 VAL VAL A . n A 1 91 LEU 91 384 384 LEU LEU A . n A 1 92 ILE 92 385 385 ILE ILE A . n A 1 93 THR 93 386 386 THR THR A . n A 1 94 THR 94 387 387 THR THR A . n A 1 95 ASN 95 388 388 ASN ASN A . n A 1 96 VAL 96 389 389 VAL VAL A . n A 1 97 LEU 97 390 390 LEU LEU A . n A 1 98 ALA 98 391 391 ALA ALA A . n A 1 99 ARG 99 392 392 ARG ARG A . n A 1 100 GLY 100 393 393 GLY GLY A . n A 1 101 ILE 101 394 394 ILE ILE A . n A 1 102 ASP 102 395 395 ASP ASP A . n A 1 103 ILE 103 396 396 ILE ILE A . n A 1 104 PRO 104 397 397 PRO PRO A . n A 1 105 THR 105 398 398 THR THR A . n A 1 106 VAL 106 399 399 VAL VAL A . n A 1 107 SER 107 400 400 SER SER A . n A 1 108 MSE 108 401 401 MSE MSE A . n A 1 109 VAL 109 402 402 VAL VAL A . n A 1 110 VAL 110 403 403 VAL VAL A . n A 1 111 ASN 111 404 404 ASN ASN A . n A 1 112 TYR 112 405 405 TYR TYR A . n A 1 113 ASP 113 406 406 ASP ASP A . n A 1 114 LEU 114 407 407 LEU LEU A . n A 1 115 PRO 115 408 408 PRO PRO A . n A 1 116 THR 116 409 409 THR THR A . n A 1 117 LEU 117 410 410 LEU LEU A . n A 1 118 ALA 118 411 411 ALA ALA A . n A 1 119 ASN 119 412 412 ASN ASN A . n A 1 120 GLY 120 413 413 GLY GLY A . n A 1 121 GLN 121 414 414 GLN GLN A . n A 1 122 ALA 122 415 415 ALA ALA A . n A 1 123 ASP 123 416 416 ASP ASP A . n A 1 124 PRO 124 417 417 PRO PRO A . n A 1 125 ALA 125 418 418 ALA ALA A . n A 1 126 THR 126 419 419 THR THR A . n A 1 127 TYR 127 420 420 TYR TYR A . n A 1 128 ILE 128 421 421 ILE ILE A . n A 1 129 HIS 129 422 422 HIS HIS A . n A 1 130 ARG 130 423 423 ARG ARG A . n A 1 131 ILE 131 424 424 ILE ILE A . n A 1 132 GLY 132 425 425 GLY GLY A . n A 1 133 ARG 133 426 426 ARG ARG A . n A 1 134 THR 134 427 427 THR THR A . n A 1 135 GLY 135 428 428 GLY GLY A . n A 1 136 ARG 136 429 429 ARG ARG A . n A 1 137 PHE 137 430 430 PHE PHE A . n A 1 138 GLY 138 431 431 GLY GLY A . n A 1 139 ARG 139 432 432 ARG ARG A . n A 1 140 LYS 140 433 433 LYS LYS A . n A 1 141 GLY 141 434 434 GLY GLY A . n A 1 142 VAL 142 435 435 VAL VAL A . n A 1 143 ALA 143 436 436 ALA ALA A . n A 1 144 ILE 144 437 437 ILE ILE A . n A 1 145 SER 145 438 438 SER SER A . n A 1 146 PHE 146 439 439 PHE PHE A . n A 1 147 VAL 147 440 440 VAL VAL A . n A 1 148 HIS 148 441 441 HIS HIS A . n A 1 149 ASP 149 442 442 ASP ASP A . n A 1 150 LYS 150 443 443 LYS LYS A . n A 1 151 ASN 151 444 444 ASN ASN A . n A 1 152 SER 152 445 445 SER SER A . n A 1 153 PHE 153 446 446 PHE PHE A . n A 1 154 ASN 154 447 447 ASN ASN A . n A 1 155 ILE 155 448 448 ILE ILE A . n A 1 156 LEU 156 449 449 LEU LEU A . n A 1 157 SER 157 450 450 SER SER A . n A 1 158 ALA 158 451 451 ALA ALA A . n A 1 159 ILE 159 452 452 ILE ILE A . n A 1 160 GLN 160 453 453 GLN GLN A . n A 1 161 LYS 161 454 454 LYS LYS A . n A 1 162 TYR 162 455 455 TYR TYR A . n A 1 163 PHE 163 456 456 PHE PHE A . n A 1 164 GLY 164 457 457 GLY GLY A . n A 1 165 ASP 165 458 458 ASP ASP A . n A 1 166 ILE 166 459 459 ILE ILE A . n A 1 167 GLU 167 460 460 GLU GLU A . n A 1 168 MSE 168 461 461 MSE MSE A . n A 1 169 THR 169 462 462 THR THR A . n A 1 170 ARG 170 463 463 ARG ARG A . n A 1 171 VAL 171 464 464 VAL VAL A . n A 1 172 PRO 172 465 465 PRO PRO A . n A 1 173 THR 173 466 466 THR THR A . n A 1 174 ASP 174 467 467 ASP ASP A . n A 1 175 ASP 175 468 468 ASP ASP A . n A 1 176 TRP 176 469 469 TRP TRP A . n A 1 177 ASP 177 470 470 ASP ASP A . n A 1 178 GLU 178 471 471 GLU GLU A . n A 1 179 VAL 179 472 472 VAL VAL A . n A 1 180 GLU 180 473 473 GLU GLU A . n A 1 181 LYS 181 474 474 LYS LYS A . n A 1 182 ILE 182 475 475 ILE ILE A . n A 1 183 VAL 183 476 476 VAL VAL A . n A 1 184 LYS 184 477 477 LYS LYS A . n A 1 185 LYS 185 478 478 LYS LYS A . n A 1 186 VAL 186 479 479 VAL VAL A . n A 1 187 LEU 187 480 ? ? ? A . n A 1 188 LYS 188 481 ? ? ? A . n A 1 189 ASP 189 482 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 309 ? MET SELENOMETHIONINE 2 A MSE 35 A MSE 328 ? MET SELENOMETHIONINE 3 A MSE 108 A MSE 401 ? MET SELENOMETHIONINE 4 A MSE 168 A MSE 461 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-01 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -19.9794 -19.9272 -8.4130 -0.0285 -0.0326 -0.0399 -0.0184 -0.0466 0.0337 1.0484 1.3285 0.7842 -0.2151 0.1901 -0.0990 -0.1296 0.0543 0.0753 0.0642 0.1011 -0.0772 0.0240 -0.0900 0.0649 'X-RAY DIFFRACTION' 2 ? refined -21.7709 -20.7604 -9.6589 -0.0344 -0.0096 -0.0479 -0.0090 -0.0237 0.0351 0.4479 1.0719 0.4110 -0.2593 0.1624 -0.1058 -0.1049 0.0276 0.0773 0.0778 0.0472 -0.0478 0.0156 -0.0411 0.0162 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 300 A 479 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 1 A 153 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 REFMAC refinement 5.2.0005 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 478 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -59.01 _pdbx_validate_torsion.psi -71.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 294 ? A GLY 1 2 1 Y 1 A ALA 295 ? A ALA 2 3 1 Y 1 A THR 296 ? A THR 3 4 1 Y 1 A ASN 297 ? A ASN 4 5 1 Y 1 A GLU 298 ? A GLU 5 6 1 Y 1 A VAL 299 ? A VAL 6 7 1 Y 1 A LEU 480 ? A LEU 187 8 1 Y 1 A LYS 481 ? A LYS 188 9 1 Y 1 A ASP 482 ? A ASP 189 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 27 27 HOH HOH A . B 2 HOH 28 28 28 HOH HOH A . B 2 HOH 29 29 29 HOH HOH A . B 2 HOH 30 30 30 HOH HOH A . B 2 HOH 31 31 31 HOH HOH A . B 2 HOH 32 32 32 HOH HOH A . B 2 HOH 33 33 33 HOH HOH A . B 2 HOH 34 34 34 HOH HOH A . B 2 HOH 35 35 35 HOH HOH A . B 2 HOH 36 36 36 HOH HOH A . B 2 HOH 37 37 37 HOH HOH A . B 2 HOH 38 38 38 HOH HOH A . B 2 HOH 39 39 39 HOH HOH A . B 2 HOH 40 40 40 HOH HOH A . B 2 HOH 41 41 41 HOH HOH A . B 2 HOH 42 42 42 HOH HOH A . B 2 HOH 43 43 43 HOH HOH A . B 2 HOH 44 44 44 HOH HOH A . B 2 HOH 45 45 45 HOH HOH A . B 2 HOH 46 46 46 HOH HOH A . B 2 HOH 47 47 47 HOH HOH A . B 2 HOH 48 48 48 HOH HOH A . B 2 HOH 49 49 49 HOH HOH A . B 2 HOH 50 50 50 HOH HOH A . B 2 HOH 51 51 51 HOH HOH A . B 2 HOH 52 52 52 HOH HOH A . B 2 HOH 53 53 53 HOH HOH A . B 2 HOH 54 54 54 HOH HOH A . B 2 HOH 55 55 55 HOH HOH A . B 2 HOH 56 56 56 HOH HOH A . B 2 HOH 57 57 57 HOH HOH A . B 2 HOH 58 58 58 HOH HOH A . B 2 HOH 59 59 59 HOH HOH A . B 2 HOH 60 60 60 HOH HOH A . B 2 HOH 61 61 61 HOH HOH A . B 2 HOH 62 62 62 HOH HOH A . B 2 HOH 63 63 63 HOH HOH A . B 2 HOH 64 64 64 HOH HOH A . B 2 HOH 65 65 65 HOH HOH A . B 2 HOH 66 66 66 HOH HOH A . B 2 HOH 67 67 67 HOH HOH A . B 2 HOH 68 68 68 HOH HOH A . B 2 HOH 69 69 69 HOH HOH A . B 2 HOH 70 70 70 HOH HOH A . B 2 HOH 71 71 71 HOH HOH A . B 2 HOH 72 72 72 HOH HOH A . B 2 HOH 73 73 73 HOH HOH A . B 2 HOH 74 74 74 HOH HOH A . B 2 HOH 75 75 75 HOH HOH A . B 2 HOH 76 76 76 HOH HOH A . B 2 HOH 77 77 77 HOH HOH A . B 2 HOH 78 78 78 HOH HOH A . B 2 HOH 79 79 79 HOH HOH A . B 2 HOH 80 80 80 HOH HOH A . B 2 HOH 81 81 81 HOH HOH A . B 2 HOH 82 82 82 HOH HOH A . B 2 HOH 83 83 83 HOH HOH A . B 2 HOH 84 84 84 HOH HOH A . B 2 HOH 85 85 85 HOH HOH A . B 2 HOH 86 86 86 HOH HOH A . B 2 HOH 87 87 87 HOH HOH A . B 2 HOH 88 88 88 HOH HOH A . B 2 HOH 89 89 89 HOH HOH A . B 2 HOH 90 90 90 HOH HOH A . B 2 HOH 91 91 91 HOH HOH A . B 2 HOH 92 92 92 HOH HOH A . B 2 HOH 93 93 93 HOH HOH A . B 2 HOH 94 94 94 HOH HOH A . B 2 HOH 95 95 95 HOH HOH A . B 2 HOH 96 96 96 HOH HOH A . B 2 HOH 97 97 97 HOH HOH A . B 2 HOH 98 98 98 HOH HOH A . B 2 HOH 99 99 99 HOH HOH A . B 2 HOH 100 100 100 HOH HOH A . B 2 HOH 101 101 101 HOH HOH A . B 2 HOH 102 102 102 HOH HOH A . B 2 HOH 103 103 103 HOH HOH A . B 2 HOH 104 104 104 HOH HOH A . B 2 HOH 105 105 105 HOH HOH A . B 2 HOH 106 106 106 HOH HOH A . B 2 HOH 107 107 107 HOH HOH A . B 2 HOH 108 108 108 HOH HOH A . B 2 HOH 109 109 109 HOH HOH A . B 2 HOH 110 110 110 HOH HOH A . B 2 HOH 111 111 111 HOH HOH A . B 2 HOH 112 112 112 HOH HOH A . B 2 HOH 113 113 113 HOH HOH A . B 2 HOH 114 114 114 HOH HOH A . B 2 HOH 115 115 115 HOH HOH A . B 2 HOH 116 116 116 HOH HOH A . B 2 HOH 117 117 117 HOH HOH A . B 2 HOH 118 118 118 HOH HOH A . B 2 HOH 119 119 119 HOH HOH A . B 2 HOH 120 120 120 HOH HOH A . B 2 HOH 121 121 121 HOH HOH A . B 2 HOH 122 122 122 HOH HOH A . B 2 HOH 123 123 123 HOH HOH A . B 2 HOH 124 124 124 HOH HOH A . B 2 HOH 125 125 125 HOH HOH A . B 2 HOH 126 126 126 HOH HOH A . B 2 HOH 127 127 127 HOH HOH A . B 2 HOH 128 128 128 HOH HOH A . B 2 HOH 129 129 129 HOH HOH A . B 2 HOH 130 130 130 HOH HOH A . B 2 HOH 131 131 131 HOH HOH A . B 2 HOH 132 132 132 HOH HOH A . B 2 HOH 133 133 133 HOH HOH A . B 2 HOH 134 134 134 HOH HOH A . B 2 HOH 135 135 135 HOH HOH A . B 2 HOH 136 136 136 HOH HOH A . B 2 HOH 137 137 137 HOH HOH A . B 2 HOH 138 138 138 HOH HOH A . B 2 HOH 139 139 139 HOH HOH A . B 2 HOH 140 140 140 HOH HOH A . B 2 HOH 141 141 141 HOH HOH A . B 2 HOH 142 142 142 HOH HOH A . B 2 HOH 143 143 143 HOH HOH A . B 2 HOH 144 144 144 HOH HOH A . B 2 HOH 145 145 145 HOH HOH A . B 2 HOH 146 146 146 HOH HOH A . B 2 HOH 147 147 147 HOH HOH A . B 2 HOH 148 148 148 HOH HOH A . B 2 HOH 149 149 149 HOH HOH A . B 2 HOH 150 150 150 HOH HOH A . B 2 HOH 151 151 151 HOH HOH A . B 2 HOH 152 152 152 HOH HOH A . B 2 HOH 153 153 153 HOH HOH A . #