HEADER OXIDOREDUCTASE 27-FEB-09 3GFR TITLE STRUCTURE OF YHDA, D137L VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN-DEPENDENT NADPH-AZOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AZOBENZENE REDUCTASE; COMPND 5 EC: 1.7.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: AZR, BSU09340, YHDA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS FLAVOPROTEINS, QUINONE REDUCTASE, FLAVODOXIN, OLIGOMERIZATION, KEYWDS 2 FLAVOPROTEIN, FMN, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.STAUNIG,K.GRUBER REVDAT 3 06-SEP-23 3GFR 1 REMARK REVDAT 2 20-OCT-21 3GFR 1 REMARK SEQADV REVDAT 1 22-SEP-09 3GFR 0 JRNL AUTH A.BINTER,N.STAUNIG,I.JELESAROV,K.LOHNER,B.A.PALFEY,S.DELLER, JRNL AUTH 2 K.GRUBER,P.MACHEROUX JRNL TITL A SINGLE INTERSUBUNIT SALT BRIDGE AFFECTS OLIGOMERIZATION JRNL TITL 2 AND CATALYTIC ACTIVITY IN A BACTERIAL QUINONE REDUCTASE JRNL REF FEBS J. V. 276 5263 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19682074 JRNL DOI 10.1111/J.1742-4658.2009.07222.X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 24878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9720 - 4.9750 0.00 2024 115 0.2200 0.2690 REMARK 3 2 4.9750 - 3.9590 0.00 2658 144 0.1400 0.1820 REMARK 3 3 3.9590 - 3.4610 0.00 2731 158 0.1760 0.2330 REMARK 3 4 3.4610 - 3.1460 0.00 2723 168 0.1920 0.2460 REMARK 3 5 3.1460 - 2.9210 0.00 2728 141 0.2040 0.2720 REMARK 3 6 2.9210 - 2.7500 0.00 2730 159 0.2130 0.2590 REMARK 3 7 2.7500 - 2.6120 0.00 2712 120 0.2160 0.2800 REMARK 3 8 2.6120 - 2.4990 0.00 2702 126 0.2220 0.2980 REMARK 3 9 2.4990 - 2.4030 0.00 2599 140 0.2430 0.3080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.45 REMARK 3 B_SOL : 70.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05400 REMARK 3 B22 (A**2) : 7.07600 REMARK 3 B33 (A**2) : -8.12900 REMARK 3 B12 (A**2) : 1.15300 REMARK 3 B13 (A**2) : -1.48000 REMARK 3 B23 (A**2) : 4.59500 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5387 REMARK 3 ANGLE : 0.614 7309 REMARK 3 CHIRALITY : 0.042 855 REMARK 3 PLANARITY : 0.003 919 REMARK 3 DIHEDRAL : 16.568 1975 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1-7 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5402 -20.5415 26.9713 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.1504 REMARK 3 T33: 0.2211 T12: -0.0351 REMARK 3 T13: 0.0293 T23: -0.1366 REMARK 3 L TENSOR REMARK 3 L11: 1.4007 L22: 3.8556 REMARK 3 L33: 2.4605 L12: 0.7466 REMARK 3 L13: 0.4134 L23: -2.6746 REMARK 3 S TENSOR REMARK 3 S11: 0.1348 S12: -0.1274 S13: 0.3595 REMARK 3 S21: -0.1286 S22: 0.2849 S23: 0.1359 REMARK 3 S31: 0.3620 S32: 0.0766 S33: -0.1804 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 8-42 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4640 -19.6131 26.3758 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.1835 REMARK 3 T33: 0.2030 T12: -0.0472 REMARK 3 T13: 0.0364 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.7221 L22: 1.2613 REMARK 3 L33: 0.9013 L12: 0.4265 REMARK 3 L13: -0.5492 L23: 0.3292 REMARK 3 S TENSOR REMARK 3 S11: 0.2175 S12: -0.1540 S13: 0.2043 REMARK 3 S21: 0.4138 S22: -0.0650 S23: 0.2981 REMARK 3 S31: -0.1769 S32: -0.1032 S33: -0.0970 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 43-152 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6246 -24.2506 20.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.1920 T22: 0.1815 REMARK 3 T33: 0.1738 T12: -0.0420 REMARK 3 T13: -0.0273 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.3365 L22: 0.3088 REMARK 3 L33: 1.3886 L12: -0.0126 REMARK 3 L13: 0.0482 L23: -0.3189 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0481 S13: 0.0024 REMARK 3 S21: 0.0671 S22: 0.0074 S23: -0.0031 REMARK 3 S31: -0.0358 S32: 0.1223 S33: -0.0106 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 153-171 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2210 -30.7456 33.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.2673 REMARK 3 T33: 0.2114 T12: 0.0171 REMARK 3 T13: -0.0800 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.6488 L22: 0.4087 REMARK 3 L33: 0.8298 L12: 0.4279 REMARK 3 L13: 0.6802 L23: 0.7769 REMARK 3 S TENSOR REMARK 3 S11: 0.4318 S12: 0.0134 S13: -0.1284 REMARK 3 S21: 0.2909 S22: -0.1047 S23: -0.1261 REMARK 3 S31: 0.3285 S32: 0.1341 S33: -0.2779 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESID 1-26 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9160 -51.8480 3.9384 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.5012 REMARK 3 T33: 0.1915 T12: 0.1214 REMARK 3 T13: -0.0654 T23: 0.0962 REMARK 3 L TENSOR REMARK 3 L11: 2.9462 L22: 1.6418 REMARK 3 L33: 2.1693 L12: -0.8002 REMARK 3 L13: 1.8238 L23: 0.0664 REMARK 3 S TENSOR REMARK 3 S11: 0.1061 S12: -0.0399 S13: 0.1701 REMARK 3 S21: 0.4218 S22: -0.0043 S23: -0.2380 REMARK 3 S31: 0.3019 S32: 0.8895 S33: 0.0523 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 27-121 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6267 -55.9054 -1.6961 REMARK 3 T TENSOR REMARK 3 T11: 0.3376 T22: 0.2030 REMARK 3 T33: 0.1648 T12: 0.1329 REMARK 3 T13: -0.0332 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2741 L22: 0.4727 REMARK 3 L33: 1.1346 L12: 0.0901 REMARK 3 L13: 0.2020 L23: -0.4919 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.0720 S13: -0.0115 REMARK 3 S21: -0.0869 S22: -0.1350 S23: -0.0051 REMARK 3 S31: 0.3155 S32: 0.4279 S33: 0.0325 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 122-160 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6113 -43.3040 6.2037 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.2438 REMARK 3 T33: 0.2171 T12: 0.0451 REMARK 3 T13: -0.0673 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.2368 L22: 0.6442 REMARK 3 L33: 0.1837 L12: 0.3246 REMARK 3 L13: 0.6927 L23: 0.5217 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.1219 S13: 0.1185 REMARK 3 S21: 0.2495 S22: 0.0561 S23: 0.0153 REMARK 3 S31: 0.1664 S32: 0.0994 S33: -0.0345 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 161-171 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6186 -46.9504 14.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.4350 T22: 0.2933 REMARK 3 T33: 0.2647 T12: 0.0152 REMARK 3 T13: 0.1526 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 3.5030 L22: 2.3289 REMARK 3 L33: 7.7651 L12: 0.6682 REMARK 3 L13: 3.1181 L23: 2.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.8146 S12: -0.3034 S13: 0.3731 REMARK 3 S21: 0.4966 S22: -0.2438 S23: -0.0497 REMARK 3 S31: -0.4822 S32: -0.6767 S33: -0.5315 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN C AND RESID 1-8 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0388 -25.0874 -5.1361 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.1934 REMARK 3 T33: 0.2198 T12: 0.0559 REMARK 3 T13: -0.0647 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.7838 L22: 0.7508 REMARK 3 L33: 0.8617 L12: 0.2415 REMARK 3 L13: 1.1205 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: -0.2384 S12: -0.0609 S13: -0.2038 REMARK 3 S21: -0.0646 S22: 0.1945 S23: -0.0968 REMARK 3 S31: -0.0707 S32: -0.0917 S33: -0.0067 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN C AND RESID 9-71 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2140 -20.6391 -0.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.1705 REMARK 3 T33: 0.1962 T12: 0.0159 REMARK 3 T13: -0.0214 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.1816 L22: 0.1855 REMARK 3 L33: 1.6276 L12: -0.0821 REMARK 3 L13: 0.7971 L23: -0.2143 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.0752 S13: 0.0870 REMARK 3 S21: -0.0618 S22: -0.0062 S23: 0.0834 REMARK 3 S31: -0.2864 S32: -0.1076 S33: 0.0278 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN C AND RESID 72-118 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5385 -28.9513 3.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1802 REMARK 3 T33: 0.1970 T12: 0.0013 REMARK 3 T13: -0.0212 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.7134 L22: 0.3436 REMARK 3 L33: 0.6390 L12: -0.2928 REMARK 3 L13: 0.0795 L23: -0.2544 REMARK 3 S TENSOR REMARK 3 S11: 0.0917 S12: 0.0238 S13: -0.1484 REMARK 3 S21: 0.0296 S22: 0.0168 S23: 0.0366 REMARK 3 S31: 0.0481 S32: 0.0735 S33: -0.0936 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN C AND RESID 119-171 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5725 -31.7571 -8.3261 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.2356 REMARK 3 T33: 0.1713 T12: 0.0321 REMARK 3 T13: -0.0015 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.4329 L22: 0.6311 REMARK 3 L33: 0.0876 L12: -0.0493 REMARK 3 L13: 0.1442 L23: -0.3908 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: 0.3059 S13: -0.0839 REMARK 3 S21: -0.1566 S22: -0.0860 S23: -0.0484 REMARK 3 S31: 0.2034 S32: 0.0773 S33: -0.0427 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN D AND RESID 1-17 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7163 -59.8329 -23.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.4067 T22: 0.1426 REMARK 3 T33: 0.1202 T12: 0.1158 REMARK 3 T13: -0.0011 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 2.7546 L22: 1.1024 REMARK 3 L33: 2.7769 L12: -1.2395 REMARK 3 L13: -0.2509 L23: 3.1043 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.4710 S13: -0.4538 REMARK 3 S21: -0.0517 S22: -0.0192 S23: 0.1727 REMARK 3 S31: -0.2828 S32: 0.1083 S33: -0.1246 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN D AND RESID 18-65 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8191 -56.8205 -25.2646 REMARK 3 T TENSOR REMARK 3 T11: 0.3357 T22: 0.6417 REMARK 3 T33: 0.1124 T12: 0.3165 REMARK 3 T13: 0.0214 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 1.9267 L22: 1.0245 REMARK 3 L33: 2.3755 L12: 0.5042 REMARK 3 L13: 2.6861 L23: -0.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.4845 S13: -0.0401 REMARK 3 S21: -0.3078 S22: -0.0677 S23: -0.1822 REMARK 3 S31: 0.5175 S32: 1.2459 S33: 0.0050 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN D AND RESID 66-152 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1655 -49.3939 -21.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2094 REMARK 3 T33: 0.1593 T12: 0.0392 REMARK 3 T13: 0.0018 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6221 L22: 0.1255 REMARK 3 L33: 2.7322 L12: -0.0214 REMARK 3 L13: 1.3222 L23: -0.1800 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.2705 S13: -0.0553 REMARK 3 S21: 0.0376 S22: 0.0430 S23: 0.0666 REMARK 3 S31: 0.1098 S32: 0.4002 S33: -0.0737 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN D AND RESID 153-171 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3871 -42.9347 -34.6960 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.3989 REMARK 3 T33: 0.2160 T12: 0.0069 REMARK 3 T13: -0.0526 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.0794 L22: 1.2253 REMARK 3 L33: 0.2775 L12: -0.1285 REMARK 3 L13: 1.4310 L23: 0.8796 REMARK 3 S TENSOR REMARK 3 S11: 0.3071 S12: 0.4182 S13: 0.0012 REMARK 3 S21: 0.1410 S22: -0.5335 S23: 0.0980 REMARK 3 S31: 0.1985 S32: 0.2147 S33: 0.0687 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:51 or resseq 53:169 REMARK 3 ) REMARK 3 SELECTION : chain B and (resseq 3:51 or resseq 53:169 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 1260 REMARK 3 RMSD : 0.683 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:51 or resseq 53:169 REMARK 3 ) REMARK 3 SELECTION : chain C and (resseq 3:51 or resseq 53:169 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 1260 REMARK 3 RMSD : 0.696 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: chain A and (resseq 3:51 or resseq 53:169 REMARK 3 ) REMARK 3 SELECTION : chain D and (resseq 3:51 or resseq 53:169 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 1252 REMARK 3 RMSD : 0.545 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8148 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1NNI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 20% W/V PEG MME REMARK 280 5000, BATCH CRYSTALLIZATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 170 REMARK 465 ASN A 171 REMARK 465 PRO A 172 REMARK 465 GLY A 173 REMARK 465 VAL A 174 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 170 REMARK 465 ASN B 171 REMARK 465 PRO B 172 REMARK 465 GLY B 173 REMARK 465 VAL B 174 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 GLY C 170 REMARK 465 ASN C 171 REMARK 465 PRO C 172 REMARK 465 GLY C 173 REMARK 465 VAL C 174 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 90 -169.94 -163.65 REMARK 500 PHE D 37 53.60 -97.99 REMARK 500 SER D 90 -169.23 -164.63 REMARK 500 THR D 147 -157.49 -145.36 REMARK 500 ALA D 169 32.40 -98.62 REMARK 500 PRO D 172 10.36 -68.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN C 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN D 175 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NNI RELATED DB: PDB REMARK 900 WILD TYPE ENZYME REMARK 900 RELATED ID: 3GFQ RELATED DB: PDB REMARK 900 RELATED ID: 3GFS RELATED DB: PDB DBREF 3GFR A 1 174 UNP O07529 AZR_BACSU 1 174 DBREF 3GFR B 1 174 UNP O07529 AZR_BACSU 1 174 DBREF 3GFR C 1 174 UNP O07529 AZR_BACSU 1 174 DBREF 3GFR D 1 174 UNP O07529 AZR_BACSU 1 174 SEQADV 3GFR LEU A 137 UNP O07529 ASP 137 ENGINEERED MUTATION SEQADV 3GFR LEU B 137 UNP O07529 ASP 137 ENGINEERED MUTATION SEQADV 3GFR LEU C 137 UNP O07529 ASP 137 ENGINEERED MUTATION SEQADV 3GFR LEU D 137 UNP O07529 ASP 137 ENGINEERED MUTATION SEQRES 1 A 174 MET ASN MET LEU VAL ILE ASN GLY THR PRO ARG LYS HIS SEQRES 2 A 174 GLY ARG THR ARG ILE ALA ALA SER TYR ILE ALA ALA LEU SEQRES 3 A 174 TYR HIS THR ASP LEU ILE ASP LEU SER GLU PHE VAL LEU SEQRES 4 A 174 PRO VAL PHE ASN GLY GLU ALA GLU GLN SER GLU LEU LEU SEQRES 5 A 174 LYS VAL GLN GLU LEU LYS GLN ARG VAL THR LYS ALA ASP SEQRES 6 A 174 ALA ILE VAL LEU LEU SER PRO GLU TYR HIS SER GLY MET SEQRES 7 A 174 SER GLY ALA LEU LYS ASN ALA LEU ASP PHE LEU SER SER SEQRES 8 A 174 GLU GLN PHE LYS TYR LYS PRO VAL ALA LEU LEU ALA VAL SEQRES 9 A 174 ALA GLY GLY GLY LYS GLY GLY ILE ASN ALA LEU ASN ASN SEQRES 10 A 174 MET ARG THR VAL MET ARG GLY VAL TYR ALA ASN VAL ILE SEQRES 11 A 174 PRO LYS GLN LEU VAL LEU LEU PRO VAL HIS ILE ASP VAL SEQRES 12 A 174 GLU ASN ALA THR VAL ALA GLU ASN ILE LYS GLU SER ILE SEQRES 13 A 174 LYS GLU LEU VAL GLU GLU LEU SER MET PHE ALA LYS ALA SEQRES 14 A 174 GLY ASN PRO GLY VAL SEQRES 1 B 174 MET ASN MET LEU VAL ILE ASN GLY THR PRO ARG LYS HIS SEQRES 2 B 174 GLY ARG THR ARG ILE ALA ALA SER TYR ILE ALA ALA LEU SEQRES 3 B 174 TYR HIS THR ASP LEU ILE ASP LEU SER GLU PHE VAL LEU SEQRES 4 B 174 PRO VAL PHE ASN GLY GLU ALA GLU GLN SER GLU LEU LEU SEQRES 5 B 174 LYS VAL GLN GLU LEU LYS GLN ARG VAL THR LYS ALA ASP SEQRES 6 B 174 ALA ILE VAL LEU LEU SER PRO GLU TYR HIS SER GLY MET SEQRES 7 B 174 SER GLY ALA LEU LYS ASN ALA LEU ASP PHE LEU SER SER SEQRES 8 B 174 GLU GLN PHE LYS TYR LYS PRO VAL ALA LEU LEU ALA VAL SEQRES 9 B 174 ALA GLY GLY GLY LYS GLY GLY ILE ASN ALA LEU ASN ASN SEQRES 10 B 174 MET ARG THR VAL MET ARG GLY VAL TYR ALA ASN VAL ILE SEQRES 11 B 174 PRO LYS GLN LEU VAL LEU LEU PRO VAL HIS ILE ASP VAL SEQRES 12 B 174 GLU ASN ALA THR VAL ALA GLU ASN ILE LYS GLU SER ILE SEQRES 13 B 174 LYS GLU LEU VAL GLU GLU LEU SER MET PHE ALA LYS ALA SEQRES 14 B 174 GLY ASN PRO GLY VAL SEQRES 1 C 174 MET ASN MET LEU VAL ILE ASN GLY THR PRO ARG LYS HIS SEQRES 2 C 174 GLY ARG THR ARG ILE ALA ALA SER TYR ILE ALA ALA LEU SEQRES 3 C 174 TYR HIS THR ASP LEU ILE ASP LEU SER GLU PHE VAL LEU SEQRES 4 C 174 PRO VAL PHE ASN GLY GLU ALA GLU GLN SER GLU LEU LEU SEQRES 5 C 174 LYS VAL GLN GLU LEU LYS GLN ARG VAL THR LYS ALA ASP SEQRES 6 C 174 ALA ILE VAL LEU LEU SER PRO GLU TYR HIS SER GLY MET SEQRES 7 C 174 SER GLY ALA LEU LYS ASN ALA LEU ASP PHE LEU SER SER SEQRES 8 C 174 GLU GLN PHE LYS TYR LYS PRO VAL ALA LEU LEU ALA VAL SEQRES 9 C 174 ALA GLY GLY GLY LYS GLY GLY ILE ASN ALA LEU ASN ASN SEQRES 10 C 174 MET ARG THR VAL MET ARG GLY VAL TYR ALA ASN VAL ILE SEQRES 11 C 174 PRO LYS GLN LEU VAL LEU LEU PRO VAL HIS ILE ASP VAL SEQRES 12 C 174 GLU ASN ALA THR VAL ALA GLU ASN ILE LYS GLU SER ILE SEQRES 13 C 174 LYS GLU LEU VAL GLU GLU LEU SER MET PHE ALA LYS ALA SEQRES 14 C 174 GLY ASN PRO GLY VAL SEQRES 1 D 174 MET ASN MET LEU VAL ILE ASN GLY THR PRO ARG LYS HIS SEQRES 2 D 174 GLY ARG THR ARG ILE ALA ALA SER TYR ILE ALA ALA LEU SEQRES 3 D 174 TYR HIS THR ASP LEU ILE ASP LEU SER GLU PHE VAL LEU SEQRES 4 D 174 PRO VAL PHE ASN GLY GLU ALA GLU GLN SER GLU LEU LEU SEQRES 5 D 174 LYS VAL GLN GLU LEU LYS GLN ARG VAL THR LYS ALA ASP SEQRES 6 D 174 ALA ILE VAL LEU LEU SER PRO GLU TYR HIS SER GLY MET SEQRES 7 D 174 SER GLY ALA LEU LYS ASN ALA LEU ASP PHE LEU SER SER SEQRES 8 D 174 GLU GLN PHE LYS TYR LYS PRO VAL ALA LEU LEU ALA VAL SEQRES 9 D 174 ALA GLY GLY GLY LYS GLY GLY ILE ASN ALA LEU ASN ASN SEQRES 10 D 174 MET ARG THR VAL MET ARG GLY VAL TYR ALA ASN VAL ILE SEQRES 11 D 174 PRO LYS GLN LEU VAL LEU LEU PRO VAL HIS ILE ASP VAL SEQRES 12 D 174 GLU ASN ALA THR VAL ALA GLU ASN ILE LYS GLU SER ILE SEQRES 13 D 174 LYS GLU LEU VAL GLU GLU LEU SER MET PHE ALA LYS ALA SEQRES 14 D 174 GLY ASN PRO GLY VAL HET FMN A 175 31 HET FMN B 175 31 HET FMN C 175 31 HET FMN D 175 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 9 HOH *319(H2 O) HELIX 1 1 GLY A 14 TYR A 27 1 14 HELIX 2 2 GLU A 45 GLU A 50 5 6 HELIX 3 3 LEU A 51 ALA A 64 1 14 HELIX 4 4 SER A 79 PHE A 88 1 10 HELIX 5 5 SER A 90 LYS A 95 1 6 HELIX 6 6 GLY A 111 VAL A 125 1 15 HELIX 7 7 LEU A 137 VAL A 139 5 3 HELIX 8 8 ALA A 149 ALA A 169 1 21 HELIX 9 9 GLY B 14 TYR B 27 1 14 HELIX 10 10 GLU B 45 GLU B 50 5 6 HELIX 11 11 LEU B 51 ALA B 64 1 14 HELIX 12 12 SER B 79 LEU B 89 1 11 HELIX 13 13 SER B 90 LYS B 95 1 6 HELIX 14 14 GLY B 111 VAL B 125 1 15 HELIX 15 15 LEU B 137 VAL B 139 5 3 HELIX 16 16 ALA B 149 ALA B 169 1 21 HELIX 17 17 GLY C 14 TYR C 27 1 14 HELIX 18 18 GLU C 45 LEU C 51 1 7 HELIX 19 19 LEU C 51 ALA C 64 1 14 HELIX 20 20 SER C 79 PHE C 88 1 10 HELIX 21 21 SER C 90 LYS C 95 1 6 HELIX 22 22 GLY C 111 VAL C 125 1 15 HELIX 23 23 LEU C 137 VAL C 139 5 3 HELIX 24 24 ALA C 149 ALA C 169 1 21 HELIX 25 25 GLY D 14 TYR D 27 1 14 HELIX 26 26 GLU D 45 LEU D 51 5 7 HELIX 27 27 LYS D 53 ALA D 64 1 12 HELIX 28 28 SER D 79 LEU D 89 1 11 HELIX 29 29 SER D 90 LYS D 95 1 6 HELIX 30 30 GLY D 111 VAL D 125 1 15 HELIX 31 31 LEU D 137 VAL D 139 5 3 HELIX 32 32 ALA D 149 LYS D 168 1 20 SHEET 1 A 5 ASP A 30 ASP A 33 0 SHEET 2 A 5 LEU A 4 ASN A 7 1 N VAL A 5 O ASP A 30 SHEET 3 A 5 ILE A 67 PRO A 72 1 O VAL A 68 N LEU A 4 SHEET 4 A 5 PRO A 98 VAL A 104 1 O ALA A 100 N LEU A 69 SHEET 5 A 5 ASN A 128 LEU A 136 1 O LEU A 136 N ALA A 103 SHEET 1 B 2 ILE A 141 ASP A 142 0 SHEET 2 B 2 THR A 147 VAL A 148 -1 O THR A 147 N ASP A 142 SHEET 1 C 5 ASP B 30 ASP B 33 0 SHEET 2 C 5 LEU B 4 ASN B 7 1 N VAL B 5 O ILE B 32 SHEET 3 C 5 ILE B 67 PRO B 72 1 O VAL B 68 N LEU B 4 SHEET 4 C 5 PRO B 98 VAL B 104 1 O ALA B 100 N LEU B 69 SHEET 5 C 5 ASN B 128 LEU B 136 1 O LEU B 136 N ALA B 103 SHEET 1 D 2 ILE B 141 ASP B 142 0 SHEET 2 D 2 THR B 147 VAL B 148 -1 O THR B 147 N ASP B 142 SHEET 1 E 5 ASP C 30 ASP C 33 0 SHEET 2 E 5 LEU C 4 ASN C 7 1 N VAL C 5 O ASP C 30 SHEET 3 E 5 ILE C 67 PRO C 72 1 O VAL C 68 N LEU C 4 SHEET 4 E 5 PRO C 98 VAL C 104 1 O ALA C 100 N LEU C 69 SHEET 5 E 5 ASN C 128 LEU C 136 1 O LEU C 136 N ALA C 103 SHEET 1 F 2 ILE C 141 ASP C 142 0 SHEET 2 F 2 THR C 147 VAL C 148 -1 O THR C 147 N ASP C 142 SHEET 1 G 5 ASP D 30 ASP D 33 0 SHEET 2 G 5 LEU D 4 ASN D 7 1 N VAL D 5 O ASP D 30 SHEET 3 G 5 ILE D 67 PRO D 72 1 O VAL D 68 N LEU D 4 SHEET 4 G 5 PRO D 98 VAL D 104 1 O ALA D 100 N LEU D 69 SHEET 5 G 5 ASN D 128 LEU D 136 1 O LEU D 136 N ALA D 103 SHEET 1 H 2 ILE D 141 ASP D 142 0 SHEET 2 H 2 THR D 147 VAL D 148 -1 O THR D 147 N ASP D 142 CISPEP 1 LEU D 52 LYS D 53 0 3.57 SITE 1 AC1 14 THR A 9 ARG A 11 GLY A 14 ARG A 15 SITE 2 AC1 14 THR A 16 PRO A 72 GLU A 73 TYR A 74 SITE 3 AC1 14 HIS A 75 SER A 76 VAL A 104 ALA A 105 SITE 4 AC1 14 GLY A 106 ASP C 87 SITE 1 AC2 14 THR B 9 ARG B 11 GLY B 14 ARG B 15 SITE 2 AC2 14 THR B 16 PRO B 72 GLU B 73 TYR B 74 SITE 3 AC2 14 HIS B 75 SER B 76 VAL B 104 ALA B 105 SITE 4 AC2 14 GLY B 106 ASP D 87 SITE 1 AC3 20 ASP A 87 THR C 9 ARG C 11 GLY C 14 SITE 2 AC3 20 ARG C 15 THR C 16 PRO C 72 GLU C 73 SITE 3 AC3 20 TYR C 74 HIS C 75 SER C 76 VAL C 104 SITE 4 AC3 20 ALA C 105 GLY C 106 GLY C 107 HOH C 213 SITE 5 AC3 20 HOH C 214 HOH C 233 HOH C 247 HOH C 263 SITE 1 AC4 15 ASP B 87 GLU C 144 THR D 9 ARG D 11 SITE 2 AC4 15 GLY D 14 ARG D 15 THR D 16 PRO D 72 SITE 3 AC4 15 GLU D 73 TYR D 74 HIS D 75 SER D 76 SITE 4 AC4 15 VAL D 104 ALA D 105 GLY D 106 CRYST1 51.491 56.080 64.176 84.06 77.02 74.49 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019421 -0.005389 -0.004233 0.00000 SCALE2 0.000000 0.018505 -0.000855 0.00000 SCALE3 0.000000 0.000000 0.016008 0.00000