HEADER TRANSFERASE 05-MAR-09 3GIF TITLE CRYSTAL STRUCTURE OF DESKC_H188E IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE DESK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENTIRE CYTOPLASMIC REGION; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YOCF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE32 KEYWDS FOUR-HELIX BUNDLE, GHL ATPASE DOMAIN, CELL MEMBRANE, KINASE, KEYWDS 2 MEMBRANE, PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, TWO-COMPONENT KEYWDS 3 REGULATORY SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.TRAJTENBERG,D.ALBANESI,P.M.ALZARI,A.BUSCHIAZZO,D.DE MENDOZA REVDAT 4 01-NOV-23 3GIF 1 REMARK REVDAT 3 10-NOV-21 3GIF 1 REMARK SEQADV LINK REVDAT 2 28-JUL-10 3GIF 1 JRNL REVDAT 1 15-SEP-09 3GIF 0 JRNL AUTH D.ALBANESI,M.MARTIN,F.TRAJTENBERG,M.C.MANSILLA,A.HAOUZ, JRNL AUTH 2 P.M.ALZARI,D.DE MENDOZA,A.BUSCHIAZZO JRNL TITL STRUCTURAL PLASTICITY AND CATALYSIS REGULATION OF A JRNL TITL 2 THERMOSENSOR HISTIDINE KINASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16185 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805278 JRNL DOI 10.1073/PNAS.0906699106 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2009_02_15_2320_3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2730 - 4.6140 0.99 2866 151 0.2640 0.3100 REMARK 3 2 4.6140 - 3.6640 1.00 2764 146 0.2160 0.2570 REMARK 3 3 3.6640 - 3.2010 1.00 2735 144 0.2550 0.3530 REMARK 3 4 3.2010 - 2.9080 1.00 2724 143 0.2710 0.3570 REMARK 3 5 2.9080 - 2.7000 1.00 2691 142 0.2860 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 58.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2443 REMARK 3 ANGLE : 2.001 2998 REMARK 3 CHIRALITY : 0.114 364 REMARK 3 PLANARITY : 0.006 383 REMARK 3 DIHEDRAL : 22.096 840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 36.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : 0.49700 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3EHG AND 3EHF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, CACL2, TRIS, KCL, ADP, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.79000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 GLU A 328 REMARK 465 ASN A 329 REMARK 465 SER A 330 REMARK 465 PHE A 331 REMARK 465 SER A 332 REMARK 465 LYS A 333 REMARK 465 GLY A 334 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 LYS B 155 REMARK 465 GLU B 156 REMARK 465 ARG B 157 REMARK 465 GLU B 158 REMARK 465 ARG B 159 REMARK 465 LEU B 160 REMARK 465 GLU B 161 REMARK 465 GLU B 162 REMARK 465 LYS B 163 REMARK 465 LEU B 164 REMARK 465 LYS B 242 REMARK 465 GLY B 243 REMARK 465 ILE B 244 REMARK 465 ARG B 245 REMARK 465 LEU B 246 REMARK 465 LYS B 247 REMARK 465 ASP B 248 REMARK 465 GLU B 249 REMARK 465 LEU B 250 REMARK 465 ILE B 251 REMARK 465 ASN B 252 REMARK 465 ILE B 253 REMARK 465 LYS B 254 REMARK 465 GLN B 255 REMARK 465 ILE B 256 REMARK 465 LEU B 257 REMARK 465 GLU B 258 REMARK 465 ALA B 259 REMARK 465 ALA B 260 REMARK 465 ASP B 261 REMARK 465 ILE B 262 REMARK 465 MET B 263 REMARK 465 PHE B 264 REMARK 465 ILE B 265 REMARK 465 TYR B 266 REMARK 465 GLU B 267 REMARK 465 GLU B 268 REMARK 465 GLU B 269 REMARK 465 LYS B 270 REMARK 465 TRP B 271 REMARK 465 PRO B 272 REMARK 465 GLU B 273 REMARK 465 ASN B 274 REMARK 465 ILE B 275 REMARK 465 SER B 276 REMARK 465 LEU B 277 REMARK 465 LEU B 278 REMARK 465 ASN B 279 REMARK 465 GLU B 280 REMARK 465 ASN B 281 REMARK 465 ILE B 282 REMARK 465 LEU B 283 REMARK 465 SER B 284 REMARK 465 MET B 285 REMARK 465 CYS B 286 REMARK 465 LEU B 287 REMARK 465 LYS B 288 REMARK 465 GLU B 289 REMARK 465 ALA B 290 REMARK 465 VAL B 291 REMARK 465 THR B 292 REMARK 465 ASN B 293 REMARK 465 VAL B 294 REMARK 465 VAL B 295 REMARK 465 LYS B 296 REMARK 465 HIS B 297 REMARK 465 SER B 298 REMARK 465 GLN B 299 REMARK 465 ALA B 300 REMARK 465 LYS B 301 REMARK 465 THR B 302 REMARK 465 CYS B 303 REMARK 465 ARG B 304 REMARK 465 VAL B 305 REMARK 465 ASP B 306 REMARK 465 ILE B 307 REMARK 465 GLN B 308 REMARK 465 GLN B 309 REMARK 465 LEU B 310 REMARK 465 TRP B 311 REMARK 465 LYS B 312 REMARK 465 GLU B 313 REMARK 465 VAL B 314 REMARK 465 VAL B 315 REMARK 465 ILE B 316 REMARK 465 THR B 317 REMARK 465 VAL B 318 REMARK 465 SER B 319 REMARK 465 ASP B 320 REMARK 465 ASP B 321 REMARK 465 GLY B 322 REMARK 465 THR B 323 REMARK 465 PHE B 324 REMARK 465 LYS B 325 REMARK 465 GLY B 326 REMARK 465 GLU B 327 REMARK 465 GLU B 328 REMARK 465 ASN B 329 REMARK 465 SER B 330 REMARK 465 PHE B 331 REMARK 465 SER B 332 REMARK 465 LYS B 333 REMARK 465 GLY B 334 REMARK 465 HIS B 335 REMARK 465 GLY B 336 REMARK 465 LEU B 337 REMARK 465 LEU B 338 REMARK 465 GLY B 339 REMARK 465 MET B 340 REMARK 465 ARG B 341 REMARK 465 GLU B 342 REMARK 465 ARG B 343 REMARK 465 LEU B 344 REMARK 465 GLU B 345 REMARK 465 PHE B 346 REMARK 465 ALA B 347 REMARK 465 ASN B 348 REMARK 465 GLY B 349 REMARK 465 SER B 350 REMARK 465 LEU B 351 REMARK 465 HIS B 352 REMARK 465 ILE B 353 REMARK 465 ASP B 354 REMARK 465 THR B 355 REMARK 465 GLU B 356 REMARK 465 ASN B 357 REMARK 465 GLY B 358 REMARK 465 THR B 359 REMARK 465 LYS B 360 REMARK 465 LEU B 361 REMARK 465 THR B 362 REMARK 465 MET B 363 REMARK 465 ALA B 364 REMARK 465 ILE B 365 REMARK 465 PRO B 366 REMARK 465 ASN B 367 REMARK 465 ASN B 368 REMARK 465 SER B 369 REMARK 465 LYS B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 155 CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 221 CE NZ REMARK 470 GLN A 225 CG CD OE1 NE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 MET A 263 CG SD CE REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 LYS A 296 CD CE NZ REMARK 470 LYS A 301 CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 ARG B 185 CD NE CZ NH1 NH2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 MET B 241 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 182 O ILE B 237 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TRP A 311 O TRP A 311 2665 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 270 C LYS A 270 O 0.155 REMARK 500 ASP B 189 C ASP B 189 O 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 190 -78.37 -108.66 REMARK 500 GLN A 255 -70.25 -53.11 REMARK 500 LYS A 270 84.98 -49.32 REMARK 500 PHE A 324 109.83 -52.72 REMARK 500 LYS A 325 -104.08 -92.33 REMARK 500 ASN A 348 35.50 78.27 REMARK 500 ASN A 357 82.43 -167.71 REMARK 500 GLU B 169 -73.90 -39.21 REMARK 500 ASP B 189 -78.40 -50.31 REMARK 500 ASP B 212 83.83 -154.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 20 O REMARK 620 2 GLU A 289 OE2 110.9 REMARK 620 3 ASN A 293 OD1 79.5 76.9 REMARK 620 4 ADP A1301 O3B 86.9 151.7 85.5 REMARK 620 5 ADP A1301 O1A 150.3 79.2 75.7 75.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GIE RELATED DB: PDB REMARK 900 RELATED ID: 3GIG RELATED DB: PDB DBREF 3GIF A 154 370 UNP O34757 DESK_BACSU 154 370 DBREF 3GIF B 154 370 UNP O34757 DESK_BACSU 154 370 SEQADV 3GIF GLY A 153 UNP O34757 EXPRESSION TAG SEQADV 3GIF GLU A 188 UNP O34757 HIS 188 ENGINEERED MUTATION SEQADV 3GIF GLY B 153 UNP O34757 EXPRESSION TAG SEQADV 3GIF GLU B 188 UNP O34757 HIS 188 ENGINEERED MUTATION SEQRES 1 A 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 A 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 A 218 GLU ARG GLN ARG ILE ALA ARG ASP LEU GLU ASP THR LEU SEQRES 4 A 218 GLY GLN LYS LEU SER LEU ILE GLY LEU LYS SER ASP LEU SEQRES 5 A 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 A 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 A 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MET LYS GLY SEQRES 8 A 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 A 218 LEU GLU ALA ALA ASP ILE MET PHE ILE TYR GLU GLU GLU SEQRES 10 A 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 A 218 LEU SER MET CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 A 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 A 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 A 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 A 218 HIS GLY LEU LEU GLY MET ARG GLU ARG LEU GLU PHE ALA SEQRES 16 A 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 A 218 LEU THR MET ALA ILE PRO ASN ASN SER LYS SEQRES 1 B 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 B 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 B 218 GLU ARG GLN ARG ILE ALA ARG ASP LEU GLU ASP THR LEU SEQRES 4 B 218 GLY GLN LYS LEU SER LEU ILE GLY LEU LYS SER ASP LEU SEQRES 5 B 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 B 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 B 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MET LYS GLY SEQRES 8 B 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 B 218 LEU GLU ALA ALA ASP ILE MET PHE ILE TYR GLU GLU GLU SEQRES 10 B 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 B 218 LEU SER MET CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 B 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 B 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 B 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 B 218 HIS GLY LEU LEU GLY MET ARG GLU ARG LEU GLU PHE ALA SEQRES 16 B 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 B 218 LEU THR MET ALA ILE PRO ASN ASN SER LYS HET ADP A1301 27 HET CA A1303 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 CA CA 2+ FORMUL 5 HOH *20(H2 O) HELIX 1 1 GLU A 156 THR A 190 1 35 HELIX 2 2 THR A 190 LEU A 208 1 19 HELIX 3 3 ASP A 212 GLY A 243 1 32 HELIX 4 4 ARG A 245 ALA A 260 1 16 HELIX 5 5 SER A 276 SER A 298 1 23 HELIX 6 6 HIS A 335 ALA A 347 1 13 HELIX 7 7 GLU B 165 ILE B 209 1 45 HELIX 8 8 ASP B 212 VAL B 238 1 27 SHEET 1 A 5 MET A 263 ILE A 265 0 SHEET 2 A 5 THR A 302 GLN A 309 1 O CYS A 303 N MET A 263 SHEET 3 A 5 GLU A 313 ASP A 320 -1 O VAL A 315 N GLN A 308 SHEET 4 A 5 THR A 359 PRO A 366 -1 O MET A 363 N ILE A 316 SHEET 5 A 5 ILE A 353 ASP A 354 -1 N ASP A 354 O LYS A 360 LINK O HOH A 20 CA CA A1303 1555 1555 2.26 LINK OE2 GLU A 289 CA CA A1303 1555 1555 2.30 LINK OD1 ASN A 293 CA CA A1303 1555 1555 2.33 LINK O3B ADP A1301 CA CA A1303 1555 1555 2.33 LINK O1A ADP A1301 CA CA A1303 1555 1555 2.26 SITE 1 AC1 15 GLU A 289 ASN A 293 VAL A 294 HIS A 297 SITE 2 AC1 15 SER A 298 ASP A 320 THR A 323 PHE A 324 SITE 3 AC1 15 LYS A 325 GLY A 326 HIS A 335 GLY A 336 SITE 4 AC1 15 LEU A 337 THR A 359 CA A1303 SITE 1 AC2 4 HOH A 20 GLU A 289 ASN A 293 ADP A1301 CRYST1 91.580 93.480 59.420 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016829 0.00000