data_3GIK # _entry.id 3GIK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GIK NDB PD1254 RCSB RCSB051904 WWPDB D_1000051904 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ASD 'oxoG-modified Dpo4 insertion ternary complex' unspecified PDB 2ASJ 'oxoG-modified Dpo4 pre-insertion binary complex' unspecified PDB 2ASL 'oxoG-modified Dpo4 post-insertion binary complex' unspecified PDB 3GII 'Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation' unspecified PDB 3GIJ 'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs' unspecified PDB 3GIL 'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair' unspecified PDB 3GIM 'Dpo4 extension ternary complex with oxoG(anti)-G(syn) pair' unspecified # _pdbx_database_status.entry_id 3GIK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rechkoblit, O.' 1 'Malinina, L.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Impact of conformational heterogeneity of OxoG lesions and their pairing partners on bypass fidelity by Y family polymerases.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 725 _citation.page_last 736 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19446528 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.03.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rechkoblit, O.' 1 primary 'Malinina, L.' 2 primary 'Cheng, Y.' 3 primary 'Geacintov, N.E.' 4 primary 'Broyde, S.' 5 primary 'Patel, D.J.' 6 # _cell.length_a 99.855 _cell.length_b 112.399 _cell.length_c 52.834 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GIK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3GIK _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 38945.379 1 2.7.7.7 ? ? ? 2 polymer syn "5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'" 4046.645 1 ? ? ? ;PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END) ; 3 polymer syn "5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3'" 5405.521 1 ? ? ? 'oxoG-modified template strand' 4 non-polymer syn "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 6 water nat water 18.015 17 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; ;GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DT)(DT)(DG)(DG)(DA)(DT)(DG)(DG)(DT)(DA)(DG)(DOC)' GTTGGATGGTAGC D ? 3 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(DA)(DC)(8OG)(DC)(DT)(DA)(DC)(DC)(DA)(DT)(DC)(DC)(DA)(DA)(DC)' CTAACGCTACCATCCAAC E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 TYR n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 SER n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 PHE n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 ILE n 1 62 VAL n 1 63 GLU n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 ILE n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 ALA n 1 72 VAL n 1 73 TYR n 1 74 LEU n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 GLU n 1 80 VAL n 1 81 TYR n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 TYR n 1 96 SER n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 SER n 1 113 ASP n 1 114 LYS n 1 115 VAL n 1 116 ARG n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 GLU n 1 121 ALA n 1 122 TYR n 1 123 ASN n 1 124 LEU n 1 125 GLY n 1 126 LEU n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 VAL n 1 141 THR n 1 142 VAL n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 MET n 1 158 ALA n 1 159 LYS n 1 160 PRO n 1 161 ASN n 1 162 GLY n 1 163 ILE n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 ASP n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LYS n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 ARG n 1 177 GLU n 1 178 LEU n 1 179 ASP n 1 180 ILE n 1 181 ALA n 1 182 ASP n 1 183 VAL n 1 184 PRO n 1 185 GLY n 1 186 ILE n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 THR n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 GLY n 1 199 ILE n 1 200 ASN n 1 201 LYS n 1 202 LEU n 1 203 VAL n 1 204 ASP n 1 205 THR n 1 206 LEU n 1 207 SER n 1 208 ILE n 1 209 GLU n 1 210 PHE n 1 211 ASP n 1 212 LYS n 1 213 LEU n 1 214 LYS n 1 215 GLY n 1 216 MET n 1 217 ILE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 LEU n 1 229 ALA n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLU n 1 236 PRO n 1 237 ILE n 1 238 ARG n 1 239 THR n 1 240 ARG n 1 241 VAL n 1 242 ARG n 1 243 LYS n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ARG n 1 248 ILE n 1 249 VAL n 1 250 THR n 1 251 MET n 1 252 LYS n 1 253 ARG n 1 254 ASN n 1 255 SER n 1 256 ARG n 1 257 ASN n 1 258 LEU n 1 259 GLU n 1 260 GLU n 1 261 ILE n 1 262 LYS n 1 263 PRO n 1 264 TYR n 1 265 LEU n 1 266 PHE n 1 267 ARG n 1 268 ALA n 1 269 ILE n 1 270 GLU n 1 271 GLU n 1 272 SER n 1 273 TYR n 1 274 TYR n 1 275 LYS n 1 276 LEU n 1 277 ASP n 1 278 LYS n 1 279 ARG n 1 280 ILE n 1 281 PRO n 1 282 LYS n 1 283 ALA n 1 284 ILE n 1 285 HIS n 1 286 VAL n 1 287 VAL n 1 288 ALA n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 VAL n 1 297 SER n 1 298 ARG n 1 299 GLY n 1 300 ARG n 1 301 THR n 1 302 PHE n 1 303 PRO n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 LYS n 1 309 GLU n 1 310 THR n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLU n 1 315 SER n 1 316 VAL n 1 317 LYS n 1 318 LEU n 1 319 LEU n 1 320 GLN n 1 321 LYS n 1 322 ILE n 1 323 LEU n 1 324 GLU n 1 325 GLU n 1 326 ASP n 1 327 GLU n 1 328 ARG n 1 329 LYS n 1 330 ILE n 1 331 ARG n 1 332 ARG n 1 333 ILE n 1 334 GLY n 1 335 VAL n 1 336 ARG n 1 337 PHE n 1 338 SER n 1 339 LYS n 1 340 PHE n 1 341 ILE n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DT n 2 11 DA n 2 12 DG n 2 13 DOC n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DA n 3 5 DC n 3 6 8OG n 3 7 DC n 3 8 DT n 3 9 DA n 3 10 DC n 3 11 DC n 3 12 DA n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DA n 3 17 DA n 3 18 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'P2 / DSM 1617 / JCM 11322' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus P2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273057 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 35092 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-RIL(STRATAGENE)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'DNA primer strand' 3 1 sample ? ? ? ? ? 'DNA OXOG-modified template strand' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 1 ;IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVY QQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPN GIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK ILEEDERKIRRIGVRFSKFI ; 2 ? 2 PDB 3GIK 3GIK 2 GTTGGATGGTAGC 1 ? 3 PDB 3GIK 3GIK 3 CTAACGCTACCATCCAAC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GIK A 2 ? 341 ? Q97W02 2 ? 341 ? 2 341 2 2 3GIK D 1 ? 13 ? 3GIK 1 ? 13 ? 1 13 3 3 3GIK E 1 ? 18 ? 3GIK 1 ? 18 ? 901 918 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3GIK _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97W02 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DGT non-polymer . "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GIK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '100 mM HEPES, 100 mM Calcium acetate, 10% PEG 4000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 HEPES ? ? ? 1 2 2 'Calcium acetate' ? ? ? 1 3 3 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-11-22 _diffrn_detector.details '6144 x 6144 pixel elements with an effective pixel size less than 60x60 micron and resolution of order 90x90 micron' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3GIK _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.87 _reflns.d_resolution_low 20.0 _reflns.number_all 13271 _reflns.number_obs 12594 _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.87 _reflns_shell.d_res_low 2.96 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 84.1 _reflns_shell.Rmerge_I_obs 0.656 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GIK _refine.ls_d_res_high 2.900 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 95.060 _refine.ls_number_reflns_obs 12594 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: RESIDUAL ONLY.' _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.277 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 651 _refine.B_iso_mean 42.478 _refine.aniso_B[1][1] 10.810 _refine.aniso_B[2][2] -6.580 _refine.aniso_B[3][3] -4.230 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.pdbx_overall_ESU_R_Free 0.437 _refine.overall_SU_ML 0.421 _refine.overall_SU_B 46.661 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 75.27 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB entry 3GII' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2740 _refine_hist.pdbx_number_atoms_nucleic_acid 627 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 3418 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3525 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4864 1.609 2.227 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 340 5.567 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 121 36.517 23.636 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 560 19.211 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24 17.182 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 555 0.122 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2352 0.004 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1709 0.435 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2759 0.676 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1816 0.969 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2105 1.628 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.900 _refine_ls_shell.d_res_low 2.974 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 84.410 _refine_ls_shell.number_reflns_R_work 776 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.342 _refine_ls_shell.R_factor_R_free 0.462 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 823 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GIK _struct.title 'Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair' _struct.pdbx_descriptor 'DNA polymerase IV (E.C.2.7.7.7)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GIK _struct_keywords.text ;DNA POLYMERASE, 8-OXOGUANINE, Y-FAMILY, LESION BYPASS, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase, TRANSFERASE-DNA COMPLEX ; _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? ASN A 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 ASN A 47 ? LYS A 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P3 3 PRO A 60 ? LEU A 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P4 4 ARG A 77 ? SER A 96 ? ARG A 77 SER A 96 1 ? 20 HELX_P HELX_P5 5 ASP A 117 ? LYS A 137 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P6 6 ASN A 147 ? LYS A 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P7 7 ASP A 167 ? LEU A 178 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P8 8 ASP A 179 ? VAL A 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P9 9 ILE A 189 ? GLY A 198 ? ILE A 189 GLY A 198 1 ? 10 HELX_P HELX_P10 10 VAL A 203 ? ILE A 208 ? VAL A 203 ILE A 208 5 ? 6 HELX_P HELX_P11 11 PHE A 210 ? GLY A 218 ? PHE A 210 GLY A 218 1 ? 9 HELX_P HELX_P12 12 GLY A 218 ? ARG A 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P13 13 ASN A 257 ? ASP A 277 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P14 14 SER A 307 ? ASP A 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C DC 5 "O3'" ? ? ? 1_555 C 8OG 6 P ? ? E DC 905 E 8OG 906 1_555 ? ? ? ? ? ? ? 1.583 ? covale2 covale ? ? C 8OG 6 "O3'" ? ? ? 1_555 C DC 7 P ? ? E 8OG 906 E DC 907 1_555 ? ? ? ? ? ? ? 1.608 ? metalc1 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 7 A CA 416 1_555 ? ? ? ? ? ? ? 2.299 ? metalc2 metalc ? ? A ASP 7 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 415 1_555 ? ? ? ? ? ? ? 2.343 ? metalc3 metalc ? ? A PHE 8 O ? ? ? 1_555 F CA . CA ? ? A PHE 8 A CA 416 1_555 ? ? ? ? ? ? ? 2.313 ? metalc4 metalc ? ? A ASP 105 OD2 ? ? ? 1_555 F CA . CA ? ? A ASP 105 A CA 416 1_555 ? ? ? ? ? ? ? 2.329 ? metalc5 metalc ? ? A GLU 106 OE1 ? ? ? 1_555 E CA . CA ? ? A GLU 106 A CA 415 1_555 ? ? ? ? ? ? ? 2.877 ? metalc6 metalc ? ? A GLU 106 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 106 A CA 415 1_555 ? ? ? ? ? ? ? 2.318 ? metalc7 metalc ? ? A ALA 181 O ? ? ? 1_555 G CA . CA ? ? A ALA 181 A CA 417 1_555 ? ? ? ? ? ? ? 2.330 ? metalc8 metalc ? ? A ILE 186 O ? ? ? 1_555 G CA . CA ? ? A ILE 186 A CA 417 1_555 ? ? ? ? ? ? ? 2.329 ? metalc9 metalc ? ? D DGT . O1G ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 2.332 ? metalc10 metalc ? ? D DGT . O1B ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 2.312 ? metalc11 metalc ? ? D DGT . O2A ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 2.304 ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 415 A HOH 502 1_555 ? ? ? ? ? ? ? 2.273 ? metalc13 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 415 D HOH 503 1_555 ? ? ? ? ? ? ? 2.564 ? metalc14 metalc ? ? G CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 417 A HOH 505 1_555 ? ? ? ? ? ? ? 2.324 ? metalc15 metalc ? ? G CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 417 A HOH 504 1_555 ? ? ? ? ? ? ? 2.554 ? covale3 covale ? ? B DG 12 "O3'" ? ? ? 1_555 B DOC 13 P ? ? D DG 12 D DOC 13 1_555 ? ? ? ? ? ? ? 1.608 ? metalc16 metalc ? ? B DOC 13 OP1 ? ? ? 1_555 E CA . CA ? ? D DOC 13 A CA 415 1_555 ? ? ? ? ? ? ? 3.118 ? metalc17 metalc ? ? D DGT . O3G ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 3.198 ? hydrog1 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 18 O2 ? ? D DG 1 E DC 918 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog2 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 17 N1 ? ? D DT 2 E DA 917 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 17 N6 ? ? D DT 2 E DA 917 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 16 N6 ? ? D DT 3 E DA 916 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? hydrog5 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 15 N3 ? ? D DG 4 E DC 915 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 15 O2 ? ? D DG 4 E DC 915 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 15 N4 ? ? D DG 4 E DC 915 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 14 N3 ? ? D DG 5 E DC 914 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog9 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 15 O2 ? ? D DG 5 E DC 915 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog10 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 13 N3 ? ? D DA 6 E DT 913 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? hydrog11 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 12 N1 ? ? D DT 7 E DA 912 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 12 N6 ? ? D DT 7 E DA 912 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 11 N3 ? ? D DG 8 E DC 911 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 11 O2 ? ? D DG 8 E DC 911 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 11 N4 ? ? D DG 8 E DC 911 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 10 N3 ? ? D DG 9 E DC 910 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 10 O2 ? ? D DG 9 E DC 910 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 10 N4 ? ? D DG 9 E DC 910 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 9 N1 ? ? D DT 10 E DA 909 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 9 N6 ? ? D DT 10 E DA 909 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 8 N3 ? ? D DA 11 E DT 908 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 8 O4 ? ? D DA 11 E DT 908 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 7 N3 ? ? D DG 12 E DC 907 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 7 O2 ? ? D DG 12 E DC 907 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 7 N4 ? ? D DG 12 E DC 907 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 99 ? ILE A 101 ? ILE A 99 ILE A 101 A 2 GLU A 106 ? ASP A 110 ? GLU A 106 ASP A 110 A 3 VAL A 3 ? ASP A 7 ? VAL A 3 ASP A 7 A 4 VAL A 142 ? SER A 145 ? VAL A 142 SER A 145 A 5 ILE A 163 ? ILE A 166 ? ILE A 163 ILE A 166 B 1 GLY A 41 ? ALA A 46 ? GLY A 41 ALA A 46 B 2 VAL A 28 ? PHE A 33 ? VAL A 28 PHE A 33 B 3 VAL A 72 ? PRO A 75 ? VAL A 72 PRO A 75 C 1 SER A 244 ? SER A 255 ? SER A 244 SER A 255 C 2 ILE A 330 ? SER A 338 ? ILE A 330 SER A 338 C 3 ALA A 283 ? THR A 290 ? ALA A 283 THR A 290 C 4 ILE A 295 ? THR A 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 100 ? N GLU A 100 O TYR A 108 ? O TYR A 108 A 2 3 O LEU A 109 ? O LEU A 109 N LEU A 4 ? N LEU A 4 A 3 4 N PHE A 5 ? N PHE A 5 O GLY A 143 ? O GLY A 143 A 4 5 N ILE A 144 ? N ILE A 144 O LYS A 164 ? O LYS A 164 B 1 2 O THR A 45 ? O THR A 45 N VAL A 30 ? N VAL A 30 B 2 3 N CYS A 31 ? N CYS A 31 O LEU A 74 ? O LEU A 74 C 1 2 N VAL A 249 ? N VAL A 249 O ILE A 333 ? O ILE A 333 C 2 3 O ARG A 332 ? O ARG A 332 N VAL A 289 ? N VAL A 289 C 3 4 N ALA A 288 ? N ALA A 288 O VAL A 296 ? O VAL A 296 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE DGT A 414' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 415' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CA A 416' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CA A 417' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 PHE A 8 ? PHE A 8 . ? 1_555 ? 2 AC1 16 ASP A 9 ? ASP A 9 . ? 1_555 ? 3 AC1 16 TYR A 10 ? TYR A 10 . ? 1_555 ? 4 AC1 16 PHE A 11 ? PHE A 11 . ? 1_555 ? 5 AC1 16 TYR A 12 ? TYR A 12 . ? 1_555 ? 6 AC1 16 ALA A 44 ? ALA A 44 . ? 1_555 ? 7 AC1 16 THR A 45 ? THR A 45 . ? 1_555 ? 8 AC1 16 TYR A 48 ? TYR A 48 . ? 1_555 ? 9 AC1 16 ARG A 51 ? ARG A 51 . ? 1_555 ? 10 AC1 16 ASP A 105 ? ASP A 105 . ? 1_555 ? 11 AC1 16 LYS A 159 ? LYS A 159 . ? 1_555 ? 12 AC1 16 CA F . ? CA A 416 . ? 1_555 ? 13 AC1 16 HOH H . ? HOH A 502 . ? 1_555 ? 14 AC1 16 DOC B 13 ? DOC D 13 . ? 1_555 ? 15 AC1 16 DC C 5 ? DC E 905 . ? 1_555 ? 16 AC1 16 8OG C 6 ? 8OG E 906 . ? 1_555 ? 17 AC2 6 ASP A 7 ? ASP A 7 . ? 1_555 ? 18 AC2 6 ASP A 105 ? ASP A 105 . ? 1_555 ? 19 AC2 6 GLU A 106 ? GLU A 106 . ? 1_555 ? 20 AC2 6 HOH H . ? HOH A 502 . ? 1_555 ? 21 AC2 6 DOC B 13 ? DOC D 13 . ? 1_555 ? 22 AC2 6 HOH I . ? HOH D 503 . ? 1_555 ? 23 AC3 5 ASP A 7 ? ASP A 7 . ? 1_555 ? 24 AC3 5 PHE A 8 ? PHE A 8 . ? 1_555 ? 25 AC3 5 ASP A 105 ? ASP A 105 . ? 1_555 ? 26 AC3 5 LYS A 159 ? LYS A 159 . ? 1_555 ? 27 AC3 5 DGT D . ? DGT A 414 . ? 1_555 ? 28 AC4 4 ALA A 181 ? ALA A 181 . ? 1_555 ? 29 AC4 4 ILE A 186 ? ILE A 186 . ? 1_555 ? 30 AC4 4 HOH H . ? HOH A 504 . ? 1_555 ? 31 AC4 4 HOH H . ? HOH A 505 . ? 1_555 ? # _atom_sites.entry_id 3GIK _atom_sites.fract_transf_matrix[1][1] 0.010015 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008897 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018927 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 MET 157 157 157 MET MET A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 MET 216 216 216 MET MET A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 ARG 240 240 240 ARG ARG A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 MET 251 251 251 MET MET A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 PRO 263 263 263 PRO PRO A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 ILE 269 269 269 ILE ILE A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 GLU 271 271 271 GLU GLU A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 TYR 273 273 273 TYR TYR A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 LYS 278 278 278 LYS LYS A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 HIS 285 285 285 HIS HIS A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 VAL 287 287 287 VAL VAL A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 VAL 289 289 289 VAL VAL A . n A 1 290 THR 290 290 290 THR THR A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 ASP 292 292 292 ASP ASP A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 ASP 294 294 294 ASP ASP A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 ARG 300 300 300 ARG ARG A . n A 1 301 THR 301 301 301 THR THR A . n A 1 302 PHE 302 302 302 PHE PHE A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 HIS 304 304 304 HIS HIS A . n A 1 305 GLY 305 305 305 GLY GLY A . n A 1 306 ILE 306 306 306 ILE ILE A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 LYS 308 308 308 LYS LYS A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 THR 310 310 310 THR THR A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 TYR 312 312 312 TYR TYR A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 SER 315 315 315 SER SER A . n A 1 316 VAL 316 316 316 VAL VAL A . n A 1 317 LYS 317 317 317 LYS LYS A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 GLN 320 320 320 GLN GLN A . n A 1 321 LYS 321 321 321 LYS LYS A . n A 1 322 ILE 322 322 322 ILE ILE A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 GLU 324 324 324 GLU GLU A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 ASP 326 326 326 ASP ASP A . n A 1 327 GLU 327 327 327 GLU GLU A . n A 1 328 ARG 328 328 328 ARG ARG A . n A 1 329 LYS 329 329 329 LYS LYS A . n A 1 330 ILE 330 330 330 ILE ILE A . n A 1 331 ARG 331 331 331 ARG ARG A . n A 1 332 ARG 332 332 332 ARG ARG A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 VAL 335 335 335 VAL VAL A . n A 1 336 ARG 336 336 336 ARG ARG A . n A 1 337 PHE 337 337 337 PHE PHE A . n A 1 338 SER 338 338 338 SER SER A . n A 1 339 LYS 339 339 339 LYS LYS A . n A 1 340 PHE 340 340 340 PHE PHE A . n A 1 341 ILE 341 341 341 ILE ILE A . n B 2 1 DG 1 1 802 DG G D . n B 2 2 DT 2 2 803 DT T D . n B 2 3 DT 3 3 804 DT T D . n B 2 4 DG 4 4 805 DG G D . n B 2 5 DG 5 5 806 DG G D . n B 2 6 DA 6 6 807 DA A D . n B 2 7 DT 7 7 808 DT T D . n B 2 8 DG 8 8 809 DG G D . n B 2 9 DG 9 9 810 DG G D . n B 2 10 DT 10 10 811 DT T D . n B 2 11 DA 11 11 812 DA A D . n B 2 12 DG 12 12 813 DG G D . n B 2 13 DOC 13 13 814 DOC DOC D . n C 3 1 DC 1 901 901 DC C E . n C 3 2 DT 2 902 902 DT T E . n C 3 3 DA 3 903 903 DA A E . n C 3 4 DA 4 904 904 DA A E . n C 3 5 DC 5 905 905 DC C E . n C 3 6 8OG 6 906 906 8OG 8OG E . n C 3 7 DC 7 907 907 DC C E . n C 3 8 DT 8 908 908 DT T E . n C 3 9 DA 9 909 909 DA A E . n C 3 10 DC 10 910 910 DC C E . n C 3 11 DC 11 911 911 DC C E . n C 3 12 DA 12 912 912 DA A E . n C 3 13 DT 13 913 913 DT T E . n C 3 14 DC 14 914 914 DC C E . n C 3 15 DC 15 915 915 DC C E . n C 3 16 DA 16 916 916 DA A E . n C 3 17 DA 17 917 917 DA A E . n C 3 18 DC 18 918 918 DC C E . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B DOC 13 D DOC 13 ? DC "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" 2 C 8OG 6 E 8OG 906 ? DG ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4030 ? 1 MORE -29.5 ? 1 'SSA (A^2)' 21440 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O ? A PHE 8 ? A PHE 8 ? 1_555 90.6 ? 2 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 67.4 ? 3 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 104.2 ? 4 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1G ? D DGT . ? A DGT 414 ? 1_555 143.3 ? 5 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1G ? D DGT . ? A DGT 414 ? 1_555 67.5 ? 6 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1G ? D DGT . ? A DGT 414 ? 1_555 144.4 ? 7 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 159.8 ? 8 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 98.4 ? 9 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 92.8 ? 10 O1G ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 56.6 ? 11 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 109.2 ? 12 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 146.3 ? 13 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 62.1 ? 14 O1G ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 104.8 ? 15 O1B ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 55.0 ? 16 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O3G ? D DGT . ? A DGT 414 ? 1_555 129.5 ? 17 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O3G ? D DGT . ? A DGT 414 ? 1_555 104.9 ? 18 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O3G ? D DGT . ? A DGT 414 ? 1_555 145.8 ? 19 O1G ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O3G ? D DGT . ? A DGT 414 ? 1_555 41.5 ? 20 O1B ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O3G ? D DGT . ? A DGT 414 ? 1_555 65.5 ? 21 O2A ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O3G ? D DGT . ? A DGT 414 ? 1_555 83.7 ? 22 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OE1 ? A GLU 106 ? A GLU 106 ? 1_555 133.7 ? 23 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 94.6 ? 24 OE1 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 49.5 ? 25 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? H HOH . ? A HOH 502 ? 1_555 80.7 ? 26 OE1 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? H HOH . ? A HOH 502 ? 1_555 142.8 ? 27 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? H HOH . ? A HOH 502 ? 1_555 129.1 ? 28 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 503 ? 1_555 71.9 ? 29 OE1 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 503 ? 1_555 111.7 ? 30 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 503 ? 1_555 71.3 ? 31 O ? H HOH . ? A HOH 502 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 503 ? 1_555 59.0 ? 32 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OP1 ? B DOC 13 ? D DOC 13 ? 1_555 119.3 ? 33 OE1 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OP1 ? B DOC 13 ? D DOC 13 ? 1_555 77.2 ? 34 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OP1 ? B DOC 13 ? D DOC 13 ? 1_555 66.9 ? 35 O ? H HOH . ? A HOH 502 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OP1 ? B DOC 13 ? D DOC 13 ? 1_555 71.7 ? 36 O ? I HOH . ? D HOH 503 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OP1 ? B DOC 13 ? D DOC 13 ? 1_555 47.4 ? 37 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? A ILE 186 ? A ILE 186 ? 1_555 127.5 ? 38 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 505 ? 1_555 66.1 ? 39 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 505 ? 1_555 131.2 ? 40 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 504 ? 1_555 78.6 ? 41 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 504 ? 1_555 62.1 ? 42 O ? H HOH . ? A HOH 505 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 504 ? 1_555 141.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-12-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 21.7489 18.6068 12.0626 0.0335 0.2861 0.2131 0.0281 -0.0111 0.0523 1.5504 7.6615 5.9187 -1.0397 0.2599 -3.3431 -0.1521 0.4118 -0.2598 -0.1353 -0.0100 0.5410 0.2048 -0.3281 -0.5897 'X-RAY DIFFRACTION' 2 ? refined 11.6349 10.6462 20.7966 0.3987 0.8519 0.5728 -0.2056 0.2361 0.1658 4.8046 4.7421 2.3543 -0.6590 0.7128 -3.0431 0.0736 0.7572 -0.8308 -0.7225 0.2351 1.3063 0.8297 -0.2219 -0.9821 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 341 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 D 1 D 13 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 E 901 E 918 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 A 414 A 414 ? . . . . ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0066 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 110 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 112 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DT 7 ? ? "C1'" D DT 7 ? ? N1 D DT 7 ? ? 112.95 108.30 4.65 0.30 N 2 1 "O4'" D DA 11 ? ? "C1'" D DA 11 ? ? N9 D DA 11 ? ? 110.11 108.30 1.81 0.30 N 3 1 "C3'" D DA 11 ? ? "O3'" D DA 11 ? ? P D DG 12 ? ? 127.71 119.70 8.01 1.20 Y 4 1 "O4'" D DG 12 ? ? "C1'" D DG 12 ? ? N9 D DG 12 ? ? 110.46 108.30 2.16 0.30 N 5 1 "C3'" E DT 902 ? ? "O3'" E DT 902 ? ? P E DA 903 ? ? 129.05 119.70 9.35 1.20 Y 6 1 "O4'" E DA 903 ? ? "C1'" E DA 903 ? ? N9 E DA 903 ? ? 103.21 108.00 -4.79 0.70 N 7 1 "O5'" E DA 904 ? ? "C5'" E DA 904 ? ? "C4'" E DA 904 ? ? 104.35 109.40 -5.05 0.80 N 8 1 "O4'" E DA 904 ? ? "C4'" E DA 904 ? ? "C3'" E DA 904 ? ? 101.43 104.50 -3.07 0.40 N 9 1 "O4'" E DA 904 ? ? "C1'" E DA 904 ? ? N9 E DA 904 ? ? 102.94 108.00 -5.06 0.70 N 10 1 "O4'" E DC 905 ? ? "C1'" E DC 905 ? ? N1 E DC 905 ? ? 111.60 108.30 3.30 0.30 N 11 1 "O4'" E DC 907 ? ? "C4'" E DC 907 ? ? "C3'" E DC 907 ? ? 99.19 104.50 -5.31 0.40 N 12 1 "C1'" E DC 907 ? ? "O4'" E DC 907 ? ? "C4'" E DC 907 ? ? 100.38 110.10 -9.72 1.00 N 13 1 "O4'" E DC 907 ? ? "C1'" E DC 907 ? ? N1 E DC 907 ? ? 110.90 108.30 2.60 0.30 N 14 1 "C1'" E DC 910 ? ? "O4'" E DC 910 ? ? "C4'" E DC 910 ? ? 103.16 110.10 -6.94 1.00 N 15 1 "O4'" E DC 910 ? ? "C1'" E DC 910 ? ? N1 E DC 910 ? ? 111.48 108.30 3.18 0.30 N 16 1 "C3'" E DC 911 ? ? "O3'" E DC 911 ? ? P E DA 912 ? ? 127.55 119.70 7.85 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 11.34 73.54 2 1 PHE A 11 ? ? -51.96 -78.90 3 1 PRO A 21 ? ? -58.37 -7.05 4 1 LYS A 24 ? ? -39.62 125.47 5 1 VAL A 32 ? ? -106.53 78.24 6 1 SER A 34 ? ? -143.51 10.87 7 1 ASP A 39 ? ? 82.29 17.75 8 1 LYS A 66 ? ? -60.77 -72.10 9 1 LEU A 68 ? ? -116.89 74.65 10 1 SER A 85 ? ? -66.45 -71.28 11 1 SER A 86 ? ? -28.91 -56.25 12 1 ALA A 102 ? ? -90.16 -67.11 13 1 SER A 103 ? ? -117.62 -144.32 14 1 SER A 145 ? ? -172.38 -179.14 15 1 ILE A 199 ? ? -62.03 96.47 16 1 GLU A 209 ? ? -81.39 -157.46 17 1 ASP A 211 ? ? -66.80 -79.60 18 1 LYS A 212 ? ? -35.67 -39.22 19 1 TYR A 224 ? ? -89.29 -70.27 20 1 ASP A 231 ? ? 51.37 5.60 21 1 ASP A 277 ? ? 54.34 83.94 22 1 LYS A 278 ? ? 82.45 -30.61 23 1 PRO A 303 ? ? -63.13 1.62 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? E 8OG 906 ? PLANAR . 2 1 "C1'" ? E 8OG 906 ? PLANAR . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GIK 'double helix' 3GIK 'b-form double helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" DGT 5 'CALCIUM ION' CA 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DGT 1 414 414 DGT DGT A . E 5 CA 1 415 415 CA CA A . F 5 CA 1 416 416 CA CA A . G 5 CA 1 417 417 CA CA A . H 6 HOH 1 502 502 HOH HOH A . H 6 HOH 2 504 504 HOH HOH A . H 6 HOH 3 505 505 HOH HOH A . H 6 HOH 4 506 506 HOH HOH A . H 6 HOH 5 512 512 HOH HOH A . H 6 HOH 6 518 518 HOH HOH A . H 6 HOH 7 519 519 HOH HOH A . H 6 HOH 8 520 520 HOH HOH A . H 6 HOH 9 522 522 HOH HOH A . H 6 HOH 10 523 523 HOH HOH A . H 6 HOH 11 529 529 HOH HOH A . H 6 HOH 12 531 531 HOH HOH A . H 6 HOH 13 539 539 HOH HOH A . I 6 HOH 1 503 503 HOH HOH D . I 6 HOH 2 537 537 HOH HOH D . J 6 HOH 1 513 513 HOH HOH E . J 6 HOH 2 528 528 HOH HOH E . #