HEADER TRANSFERASE/DNA 05-MAR-09 3GIL TITLE DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(ANTI)-T(ANTI) PAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'; COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*TP*AP*AP*CP*(8OG) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3'; COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: OXOG-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2 / DSM 1617 / JCM 11322; SOURCE 5 ATCC: 35092; SOURCE 6 GENE: DBH, DPO4, SSO2448; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL(STRATAGENE); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: DNA PRIMER STRAND; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: DNA OXOG-MODIFIED TEMPLATE STRAND KEYWDS DNA POLYMERASE, 8-OXOGUANINE, Y-FAMILY, LESION BYPASS, DNA DAMAGE, KEYWDS 2 DNA REPAIR, DNA REPLICATION, DNA-BINDING, DNA-DIRECTED DNA KEYWDS 3 POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 4 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,D.J.PATEL REVDAT 5 06-SEP-23 3GIL 1 REMARK DBREF SEQADV LINK REVDAT 4 01-NOV-17 3GIL 1 REMARK REVDAT 3 07-DEC-11 3GIL 1 JRNL REVDAT 2 13-JUL-11 3GIL 1 VERSN REVDAT 1 19-MAY-09 3GIL 0 JRNL AUTH O.RECHKOBLIT,L.MALININA,Y.CHENG,N.E.GEACINTOV,S.BROYDE, JRNL AUTH 2 D.J.PATEL JRNL TITL IMPACT OF CONFORMATIONAL HETEROGENEITY OF OXOG LESIONS AND JRNL TITL 2 THEIR PAIRING PARTNERS ON BYPASS FIDELITY BY Y FAMILY JRNL TITL 3 POLYMERASES. JRNL REF STRUCTURE V. 17 725 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19446528 JRNL DOI 10.1016/J.STR.2009.03.011 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 31369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1969 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1217 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.979 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.346 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7023 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4583 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9688 ; 1.626 ; 2.221 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11222 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 6.717 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;32.957 ;23.621 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1121 ;17.419 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;14.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1105 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6681 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1116 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1343 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4737 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3245 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3495 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.194 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3584 ; 0.513 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1378 ; 0.071 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5529 ; 0.783 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4407 ; 1.017 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4159 ; 1.703 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7490 1.3471 2.6629 REMARK 3 T TENSOR REMARK 3 T11: -0.3130 T22: -0.3289 REMARK 3 T33: -0.1839 T12: -0.0116 REMARK 3 T13: -0.0018 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.0860 L22: 1.6380 REMARK 3 L33: 0.9791 L12: -0.4640 REMARK 3 L13: 0.1647 L23: 0.1257 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.1934 S13: -0.0635 REMARK 3 S21: 0.1076 S22: 0.0715 S23: 0.0653 REMARK 3 S31: -0.0326 S32: 0.0537 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 901 E 918 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2236 -7.1044 12.9956 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: -0.0218 REMARK 3 T33: -0.0949 T12: 0.0425 REMARK 3 T13: -0.0538 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.0606 L22: 2.1659 REMARK 3 L33: 1.9419 L12: -0.7863 REMARK 3 L13: 0.1298 L23: 0.0745 REMARK 3 S TENSOR REMARK 3 S11: -0.3960 S12: -0.5980 S13: 0.0234 REMARK 3 S21: 0.5973 S22: 0.2740 S23: -0.2821 REMARK 3 S31: -0.0997 S32: 0.3297 S33: 0.1220 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4650 57.2798 40.0899 REMARK 3 T TENSOR REMARK 3 T11: -0.0473 T22: 0.0389 REMARK 3 T33: -0.1424 T12: -0.0516 REMARK 3 T13: 0.0392 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.0316 L22: 1.3436 REMARK 3 L33: 5.1958 L12: -0.5943 REMARK 3 L13: -0.2355 L23: -0.9737 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.4650 S13: -0.0294 REMARK 3 S21: 0.1533 S22: -0.0622 S23: -0.0029 REMARK 3 S31: -0.0019 S32: 0.2095 S33: 0.1465 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1802 H 1814 REMARK 3 RESIDUE RANGE : J 1903 J 1918 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9314 47.0289 46.8321 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.6925 REMARK 3 T33: 0.1861 T12: 0.0722 REMARK 3 T13: -0.0603 T23: 0.1275 REMARK 3 L TENSOR REMARK 3 L11: 2.1585 L22: 2.7420 REMARK 3 L33: 4.9655 L12: -0.7564 REMARK 3 L13: -1.1648 L23: -1.5604 REMARK 3 S TENSOR REMARK 3 S11: -0.4096 S12: -0.7266 S13: -0.2132 REMARK 3 S21: 0.5643 S22: -0.2704 S23: -0.5445 REMARK 3 S31: 0.3143 S32: 1.0631 S33: 0.6800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : 6144 X 6144 PIXEL ELEMENTS WITH REMARK 200 AN EFFECTIVE PIXEL SIZE LESS REMARK 200 THAN 60X60 MICRON AND RESOLUTION REMARK 200 OF ORDER 90X90 MICRON REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5530 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3GIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 100 MM CALCIUM ACETATE, REMARK 280 10% PEG 4000, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.34100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA J1903 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 160 C - N - CA ANGL. DEV. = 28.8 DEGREES REMARK 500 PRO A 160 C - N - CD ANGL. DEV. = -25.9 DEGREES REMARK 500 PRO B1160 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 DG D 802 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DG D 802 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG D 809 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA E 903 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC E 907 P - O5' - C5' ANGL. DEV. = -10.4 DEGREES REMARK 500 DC E 907 O4' - C4' - C3' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC E 907 C1' - O4' - C4' ANGL. DEV. = -8.7 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT H1803 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG H1805 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG H1805 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DT H1808 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG H1813 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DT J1908 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA J1912 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT J1913 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC J1914 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA J1917 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 51.55 29.07 REMARK 500 LYS A 159 152.46 -42.73 REMARK 500 PRO A 160 117.33 19.38 REMARK 500 ASN A 234 34.32 -151.83 REMARK 500 ASP A 277 83.10 55.14 REMARK 500 LYS A 278 -39.11 89.52 REMARK 500 TYR B1010 54.63 25.18 REMARK 500 ASP B1039 -6.69 93.31 REMARK 500 ARG B1077 74.24 -115.95 REMARK 500 SER B1112 -42.18 172.88 REMARK 500 ASP B1117 133.13 113.18 REMARK 500 SER B1145 -163.37 -160.59 REMARK 500 LYS B1159 -160.41 -61.36 REMARK 500 PRO B1160 117.75 -2.22 REMARK 500 ILE B1199 103.98 -56.38 REMARK 500 SER B1207 51.23 -150.82 REMARK 500 GLU B1209 95.09 -56.19 REMARK 500 PHE B1210 -60.99 -6.09 REMARK 500 ASN B1234 88.42 -158.70 REMARK 500 ASP B1277 99.78 34.99 REMARK 500 LYS B1278 -47.64 88.02 REMARK 500 ASP B1292 34.20 -95.20 REMARK 500 LEU B1293 19.69 55.88 REMARK 500 PRO B1303 38.43 -90.33 REMARK 500 HIS B1304 -136.86 -178.34 REMARK 500 ASP B1326 118.35 -164.86 REMARK 500 LYS B1339 75.33 53.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 159 PRO A 160 -109.98 REMARK 500 LYS B 1159 PRO B 1160 -121.76 REMARK 500 PRO B 1303 HIS B 1304 144.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD1 125.9 REMARK 620 3 ASP A 105 OD2 97.8 44.4 REMARK 620 4 GLU A 106 OE2 71.2 108.7 137.4 REMARK 620 5 DGT A 414 O2A 100.5 92.5 62.3 158.3 REMARK 620 6 HOH A 614 O 158.1 69.3 103.5 89.4 93.9 REMARK 620 7 HOH A 615 O 78.1 155.0 135.0 84.3 74.2 90.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 76.7 REMARK 620 3 ASP A 105 OD2 88.6 81.8 REMARK 620 4 DGT A 414 O1G 99.3 115.4 162.3 REMARK 620 5 DGT A 414 O1B 169.5 92.8 89.3 85.6 REMARK 620 6 DGT A 414 O2A 102.9 160.3 78.5 84.2 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 86.7 REMARK 620 3 HOH A 616 O 81.9 128.6 REMARK 620 4 HOH A 619 O 70.5 64.2 64.7 REMARK 620 5 HOH D 617 O 140.4 90.0 69.6 72.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 597 O REMARK 620 2 ASP B1007 OD1 55.2 REMARK 620 3 PHE B1008 O 65.9 83.6 REMARK 620 4 ASP B1105 OD2 126.0 83.9 76.9 REMARK 620 5 DGT B1414 O1G 66.1 96.9 119.9 163.1 REMARK 620 6 DGT B1414 O1B 117.9 170.3 87.1 96.8 85.2 REMARK 620 7 DGT B1414 O2A 129.5 101.6 164.0 88.4 74.9 88.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 621 O REMARK 620 2 ASP B1007 OD2 67.4 REMARK 620 3 ASP B1007 OD1 101.9 44.0 REMARK 620 4 ASP B1105 OD1 160.0 129.3 98.1 REMARK 620 5 ASP B1105 OD2 152.9 101.6 59.2 44.2 REMARK 620 6 GLU B1106 OE2 60.1 93.8 136.1 104.1 147.0 REMARK 620 7 DGT B1414 O2A 87.9 105.3 80.3 96.4 70.6 132.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 626 O REMARK 620 2 HOH B 627 O 59.9 REMARK 620 3 ALA B1181 O 56.1 64.8 REMARK 620 4 ILE B1186 O 64.8 124.8 84.2 REMARK 620 5 HOH H 625 O 49.6 66.6 103.8 79.3 REMARK 620 6 DG H1813 OP1 115.8 126.5 163.1 78.9 73.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED DPO4 INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED DPO4 PRE-INSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED DPO4 POST-INSERTION BINARY COMPLEX REMARK 900 RELATED ID: 3GII RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH DISORDERED A OPPOSITE AN OXOG REMARK 900 IN ANTI CONFORMATION REMARK 900 RELATED ID: 3GIJ RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(SYN)-A(ANTI) AND OXOG(ANTI) REMARK 900 -A(SYN) PAIRS REMARK 900 RELATED ID: 3GIK RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH THE OXOG(ANTI)-C(ANTI) PAIR REMARK 900 RELATED ID: 3GIM RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(ANTI)-G(SYN) PAIR DBREF 3GIL A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3GIL B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3GIL D 802 814 PDB 3GIL 3GIL 802 814 DBREF 3GIL E 901 918 PDB 3GIL 3GIL 901 918 DBREF 3GIL H 1802 1814 PDB 3GIL 3GIL 1802 1814 DBREF 3GIL J 1901 1918 PDB 3GIL 3GIL 1901 1918 SEQADV 3GIL GLY A 1 UNP Q97W02 INSERTION SEQADV 3GIL GLY B 1001 UNP Q97W02 INSERTION SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DT SEQRES 1 E 18 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 E 18 DC DC DA DA DC SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DT SEQRES 1 J 18 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 J 18 DC DC DA DA DC MODRES 3GIL 2DT D 814 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 3GIL 8OG E 906 DG MODRES 3GIL 2DT H 1814 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 3GIL 8OG J 1906 DG HET 2DT D 814 19 HET 8OG E 906 23 HET 2DT H1814 19 HET 8OG J1906 23 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 2DT 2(C10 H15 N2 O7 P) FORMUL 4 8OG 2(C10 H14 N5 O8 P) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 15 HOH *119(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 LEU A 197 1 11 HELIX 11 11 LYS A 201 ILE A 208 5 8 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 ASN B 1020 1 11 HELIX 17 17 PRO B 1021 LYS B 1024 5 4 HELIX 18 18 ASN B 1047 LYS B 1052 1 6 HELIX 19 19 PRO B 1060 LEU B 1068 1 9 HELIX 20 20 ARG B 1077 SER B 1096 1 20 HELIX 21 21 ASP B 1117 GLU B 1136 1 20 HELIX 22 22 ASN B 1147 ALA B 1158 1 12 HELIX 23 23 ASP B 1167 LEU B 1178 1 12 HELIX 24 24 ASP B 1179 VAL B 1183 5 5 HELIX 25 25 GLY B 1187 LYS B 1195 1 9 HELIX 26 26 LEU B 1202 GLU B 1209 5 8 HELIX 27 27 PHE B 1210 GLY B 1218 1 9 HELIX 28 28 GLY B 1218 ARG B 1230 1 13 HELIX 29 29 ASN B 1257 ASP B 1277 1 21 HELIX 30 30 SER B 1307 GLU B 1325 1 19 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 ILE A 166 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 30 O ALA A 44 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O ARG A 298 N VAL A 286 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ILE B1111 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 ILE B1002 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O ALA B1044 SHEET 3 E 3 VAL B1072 PRO B1075 1 O VAL B1072 N VAL B1029 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1332 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DG D 813 P 2DT D 814 1555 1555 1.60 LINK O3' DC E 905 P 8OG E 906 1555 1555 1.57 LINK O3' 8OG E 906 P DC E 907 1555 1555 1.60 LINK O3' DG H1813 P 2DT H1814 1555 1555 1.61 LINK O3' DC J1905 P 8OG J1906 1555 1555 1.60 LINK O3' 8OG J1906 P DC J1907 1555 1555 1.59 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.34 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.28 LINK O PHE A 8 CA CA A 416 1555 1555 2.31 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.45 LINK OD2 ASP A 105 CA CA A 415 1555 1555 3.19 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.33 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.35 LINK O ALA A 181 CA CA A 417 1555 1555 2.32 LINK O ILE A 186 CA CA A 417 1555 1555 2.34 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.31 LINK O1G DGT A 414 CA CA A 416 1555 1555 2.33 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.30 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.32 LINK CA CA A 415 O HOH A 614 1555 1555 2.92 LINK CA CA A 415 O HOH A 615 1555 1555 2.17 LINK CA CA A 417 O HOH A 616 1555 1555 2.30 LINK CA CA A 417 O HOH A 619 1555 1555 2.16 LINK CA CA A 417 O HOH D 617 1555 1555 2.35 LINK O HOH B 597 CA CA B1416 1555 1555 3.10 LINK O HOH B 621 CA CA B1415 1555 1555 2.57 LINK O HOH B 626 CA CA B1417 1555 1555 2.64 LINK O HOH B 627 CA CA B1417 1555 1555 2.49 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.32 LINK OD1 ASP B1007 CA CA B1415 1555 1555 3.13 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.30 LINK O PHE B1008 CA CA B1416 1555 1555 2.31 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.52 LINK OD2 ASP B1105 CA CA B1415 1555 1555 3.14 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.33 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.32 LINK O ALA B1181 CA CA B1417 1555 1555 2.79 LINK O ILE B1186 CA CA B1417 1555 1555 2.33 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.32 LINK O1G DGT B1414 CA CA B1416 1555 1555 2.35 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.31 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.30 LINK CA CA B1417 O HOH H 625 1555 1555 2.67 LINK CA CA B1417 OP1 DG H1813 1555 1555 2.33 SITE 1 AC1 21 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 21 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 21 ARG A 51 ALA A 57 ASP A 105 LYS A 159 SITE 4 AC1 21 CA A 415 CA A 416 HOH A 518 HOH A 570 SITE 5 AC1 21 HOH A 595 HOH A 615 2DT D 814 DC E 905 SITE 6 AC1 21 8OG E 906 SITE 1 AC2 7 ASP A 7 ASP A 105 GLU A 106 DGT A 414 SITE 2 AC2 7 CA A 416 HOH A 614 HOH A 615 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 616 HOH A 619 SITE 2 AC4 5 HOH D 617 SITE 1 AC5 20 HOH B 532 HOH B 597 ASP B1007 PHE B1008 SITE 2 AC5 20 ASP B1009 TYR B1010 PHE B1011 TYR B1012 SITE 3 AC5 20 ALA B1044 THR B1045 TYR B1048 ARG B1051 SITE 4 AC5 20 ALA B1057 ASP B1105 LYS B1159 CA B1415 SITE 5 AC5 20 CA B1416 2DT H1814 DC J1905 8OG J1906 SITE 1 AC6 6 HOH B 621 ASP B1007 ASP B1105 GLU B1106 SITE 2 AC6 6 DGT B1414 CA B1416 SITE 1 AC7 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC7 5 CA B1415 SITE 1 AC8 7 HOH B 626 HOH B 627 ALA B1181 VAL B1183 SITE 2 AC8 7 ILE B1186 HOH H 625 DG H1813 CRYST1 53.289 110.682 102.190 90.00 99.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018766 0.000000 0.003047 0.00000 SCALE2 0.000000 0.009035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009914 0.00000