data_3GIM # _entry.id 3GIM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GIM pdb_00003gim 10.2210/pdb3gim/pdb NDB PD1256 ? ? RCSB RCSB051906 ? ? WWPDB D_1000051906 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ASD 'oxoG-modified Dpo4 insertion ternary complex' unspecified PDB 2ASJ 'oxoG-modified Dpo4 pre-insertion binary complex' unspecified PDB 2ASL 'oxoG-modified Dpo4 post-insertion binary complex' unspecified PDB 3GII 'Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation' unspecified PDB 3GIJ 'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs' unspecified PDB 3GIK 'Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair' unspecified PDB 3GIL 'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair' unspecified # _pdbx_database_status.entry_id 3GIM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rechkoblit, O.' 1 'Malinina, L.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Impact of conformational heterogeneity of OxoG lesions and their pairing partners on bypass fidelity by Y family polymerases.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 725 _citation.page_last 736 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19446528 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.03.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rechkoblit, O.' 1 ? primary 'Malinina, L.' 2 ? primary 'Cheng, Y.' 3 ? primary 'Geacintov, N.E.' 4 ? primary 'Broyde, S.' 5 ? primary 'Patel, D.J.' 6 ? # _cell.length_a 99.668 _cell.length_b 111.924 _cell.length_c 53.158 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GIM _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3GIM _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 38945.379 1 2.7.7.7 ? ? ? 2 polymer syn "5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3'" 4086.668 1 ? ? ? ;PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END) ; 3 polymer syn "5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3'" 5405.521 1 ? ? ? 'oxoG-modified template strand' 4 non-polymer syn "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 6 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; ;GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DT)(DT)(DG)(DG)(DA)(DT)(DG)(DG)(DT)(DA)(DG)(DDG)' GTTGGATGGTAGG D ? 3 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(DA)(DC)(8OG)(DC)(DT)(DA)(DC)(DC)(DA)(DT)(DC)(DC)(DA)(DA)(DC)' CTAACGCTACCATCCAAC E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 TYR n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 SER n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 PHE n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 ILE n 1 62 VAL n 1 63 GLU n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 ILE n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 ALA n 1 72 VAL n 1 73 TYR n 1 74 LEU n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 GLU n 1 80 VAL n 1 81 TYR n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 TYR n 1 96 SER n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 SER n 1 113 ASP n 1 114 LYS n 1 115 VAL n 1 116 ARG n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 GLU n 1 121 ALA n 1 122 TYR n 1 123 ASN n 1 124 LEU n 1 125 GLY n 1 126 LEU n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 VAL n 1 141 THR n 1 142 VAL n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 MET n 1 158 ALA n 1 159 LYS n 1 160 PRO n 1 161 ASN n 1 162 GLY n 1 163 ILE n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 ASP n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LYS n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 ARG n 1 177 GLU n 1 178 LEU n 1 179 ASP n 1 180 ILE n 1 181 ALA n 1 182 ASP n 1 183 VAL n 1 184 PRO n 1 185 GLY n 1 186 ILE n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 THR n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 GLY n 1 199 ILE n 1 200 ASN n 1 201 LYS n 1 202 LEU n 1 203 VAL n 1 204 ASP n 1 205 THR n 1 206 LEU n 1 207 SER n 1 208 ILE n 1 209 GLU n 1 210 PHE n 1 211 ASP n 1 212 LYS n 1 213 LEU n 1 214 LYS n 1 215 GLY n 1 216 MET n 1 217 ILE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 LEU n 1 229 ALA n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLU n 1 236 PRO n 1 237 ILE n 1 238 ARG n 1 239 THR n 1 240 ARG n 1 241 VAL n 1 242 ARG n 1 243 LYS n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ARG n 1 248 ILE n 1 249 VAL n 1 250 THR n 1 251 MET n 1 252 LYS n 1 253 ARG n 1 254 ASN n 1 255 SER n 1 256 ARG n 1 257 ASN n 1 258 LEU n 1 259 GLU n 1 260 GLU n 1 261 ILE n 1 262 LYS n 1 263 PRO n 1 264 TYR n 1 265 LEU n 1 266 PHE n 1 267 ARG n 1 268 ALA n 1 269 ILE n 1 270 GLU n 1 271 GLU n 1 272 SER n 1 273 TYR n 1 274 TYR n 1 275 LYS n 1 276 LEU n 1 277 ASP n 1 278 LYS n 1 279 ARG n 1 280 ILE n 1 281 PRO n 1 282 LYS n 1 283 ALA n 1 284 ILE n 1 285 HIS n 1 286 VAL n 1 287 VAL n 1 288 ALA n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 VAL n 1 297 SER n 1 298 ARG n 1 299 GLY n 1 300 ARG n 1 301 THR n 1 302 PHE n 1 303 PRO n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 LYS n 1 309 GLU n 1 310 THR n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLU n 1 315 SER n 1 316 VAL n 1 317 LYS n 1 318 LEU n 1 319 LEU n 1 320 GLN n 1 321 LYS n 1 322 ILE n 1 323 LEU n 1 324 GLU n 1 325 GLU n 1 326 ASP n 1 327 GLU n 1 328 ARG n 1 329 LYS n 1 330 ILE n 1 331 ARG n 1 332 ARG n 1 333 ILE n 1 334 GLY n 1 335 VAL n 1 336 ARG n 1 337 PHE n 1 338 SER n 1 339 LYS n 1 340 PHE n 1 341 ILE n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DT n 2 11 DA n 2 12 DG n 2 13 DDG n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DA n 3 5 DC n 3 6 8OG n 3 7 DC n 3 8 DT n 3 9 DA n 3 10 DC n 3 11 DC n 3 12 DA n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DA n 3 17 DA n 3 18 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'P2 / DSM 1617 / JCM 11322' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus P2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273057 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 35092 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-RIL(STRATAGENE)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'DNA primer strand' 3 1 sample ? ? ? ? ? 'DNA OXOG-modified template strand' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 1 ;IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVY QQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPN GIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK ILEEDERKIRRIGVRFSKFI ; 2 ? 2 PDB 3GIM 3GIM 2 GTTGGATGGTAGG 1 ? 3 PDB 3GIM 3GIM 3 CTAACGCTACCATCCAAC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GIM A 2 ? 341 ? Q97W02 2 ? 341 ? 2 341 2 2 3GIM D 1 ? 13 ? 3GIM 802 ? 814 ? 802 814 3 3 3GIM E 1 ? 18 ? 3GIM 901 ? 918 ? 901 918 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3GIM _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97W02 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDG 'DNA linking' n "2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DGT non-polymer . "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GIM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '100 mM HEPES, 100 mM Calcium acetate, 10% PEG 4000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 HEPES ? ? ? 1 2 2 'Calcium acetate' ? ? ? 1 3 3 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-11-22 _diffrn_detector.details '6144 x 6144 pixel elements with an effective pixel size less than 60x60 micron and resolution of order 90x90 micron' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97911 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list 0.97911 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D # _reflns.entry_id 3GIM _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 20.0 _reflns.number_obs 15930 _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_netI_over_sigmaI 18.580 _reflns.pdbx_chi_squared 1.076 _reflns.pdbx_redundancy 6.100 _reflns.percent_possible_obs 93.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.70 2.80 ? ? ? 0.493 3.0 ? 1.045 5.10 ? 1198 72.70 1 1 2.80 2.91 ? ? ? 0.481 ? ? 1.107 5.60 ? 1360 82.20 2 1 2.91 3.04 ? ? ? 0.420 ? ? 1.084 6.10 ? 1502 89.90 3 1 3.04 3.20 ? ? ? 0.272 ? ? 1.064 6.30 ? 1606 96.30 4 1 3.20 3.40 ? ? ? 0.196 ? ? 1.073 6.50 ? 1668 99.30 5 1 3.40 3.66 ? ? ? 0.128 ? ? 1.046 6.50 ? 1683 99.50 6 1 3.66 4.03 ? ? ? 0.096 ? ? 1.068 6.40 ? 1686 100.00 7 1 4.03 4.60 ? ? ? 0.067 ? ? 1.059 6.30 ? 1703 99.60 8 1 4.60 5.77 ? ? ? 0.058 ? ? 0.982 6.20 ? 1720 99.10 9 1 5.77 20.00 ? ? ? 0.056 ? ? 1.230 6.00 ? 1804 98.40 10 1 # _refine.entry_id 3GIM _refine.ls_d_res_high 2.700 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 94.020 _refine.ls_number_reflns_obs 15879 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.277 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 797 _refine.B_iso_mean 56.274 _refine.aniso_B[1][1] 8.920 _refine.aniso_B[2][2] -5.510 _refine.aniso_B[3][3] -3.410 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.pdbx_overall_ESU_R 0.990 _refine.pdbx_overall_ESU_R_Free 0.372 _refine.overall_SU_ML 0.319 _refine.overall_SU_B 31.854 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 90.10 _refine.B_iso_min 28.75 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB entry 3GIK' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2740 _refine_hist.pdbx_number_atoms_nucleic_acid 630 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 3445 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3540 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4885 1.522 2.226 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 342 5.212 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 122 34.247 23.607 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 561 18.949 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24 16.441 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 556 0.114 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2361 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1558 0.265 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2354 0.338 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 228 0.223 0.500 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 1 0.347 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 27 0.259 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.255 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1743 0.431 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2766 0.698 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 2228 0.917 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2119 1.632 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.769 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 72.110 _refine_ls_shell.number_reflns_R_work 805 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.336 _refine_ls_shell.R_factor_R_free 0.416 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 856 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GIM _struct.title 'Dpo4 extension ternary complex with oxoG(anti)-G(syn) pair' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GIM _struct_keywords.text ;DNA POLYMERASE, 8-OXOGUANINE, Y-FAMILY, LESION BYPASS, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase, TRANSFERASE-DNA COMPLEX ; _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? ASN A 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 ASN A 47 ? PHE A 53 ? ASN A 47 PHE A 53 1 ? 7 HELX_P HELX_P3 3 PRO A 60 ? LEU A 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P4 4 ARG A 77 ? SER A 96 ? ARG A 77 SER A 96 1 ? 20 HELX_P HELX_P5 5 ASP A 117 ? LYS A 137 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P6 6 ASN A 147 ? LYS A 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P7 7 ASP A 167 ? LEU A 178 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P8 8 ASP A 179 ? VAL A 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P9 9 LYS A 201 ? LEU A 206 ? LYS A 201 LEU A 206 5 ? 6 HELX_P HELX_P10 10 GLU A 209 ? GLY A 218 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P11 11 GLY A 218 ? ARG A 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P12 12 ASN A 257 ? ASP A 277 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P13 13 SER A 307 ? ASP A 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 12 "O3'" ? ? ? 1_555 B DDG 13 P ? ? D DG 813 D DDG 814 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? C DC 5 "O3'" ? ? ? 1_555 C 8OG 6 P ? ? E DC 905 E 8OG 906 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? C 8OG 6 "O3'" ? ? ? 1_555 C DC 7 P ? ? E 8OG 906 E DC 907 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 415 1_555 ? ? ? ? ? ? ? 2.534 ? ? metalc2 metalc ? ? A ASP 7 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 415 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc3 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 7 A CA 416 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc4 metalc ? ? A PHE 8 O ? ? ? 1_555 F CA . CA ? ? A PHE 8 A CA 416 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc5 metalc ? ? A ASP 105 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 415 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc6 metalc ? ? A ASP 105 OD2 ? ? ? 1_555 F CA . CA ? ? A ASP 105 A CA 416 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc7 metalc ? ? A GLU 106 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 106 A CA 415 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc8 metalc ? ? A ALA 181 O ? ? ? 1_555 G CA . CA ? ? A ALA 181 A CA 417 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc9 metalc ? ? A ILE 186 O ? ? ? 1_555 G CA . CA ? ? A ILE 186 A CA 417 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc10 metalc ? ? H HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 342 A CA 417 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc11 metalc ? ? H HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 346 A CA 417 1_555 ? ? ? ? ? ? ? 2.856 ? ? metalc12 metalc ? ? D DGT . O2A ? ? ? 1_555 E CA . CA ? ? A DGT 414 A CA 415 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc13 metalc ? ? D DGT . O1G ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc14 metalc ? ? D DGT . O1B ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc15 metalc ? ? D DGT . O2A ? ? ? 1_555 F CA . CA ? ? A DGT 414 A CA 416 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 415 D HOH 373 1_555 ? ? ? ? ? ? ? 2.558 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 18 N3 ? ? D DG 802 E DC 918 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 18 O2 ? ? D DG 802 E DC 918 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 18 N4 ? ? D DG 802 E DC 918 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 16 N1 ? ? D DT 804 E DA 916 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 16 N6 ? ? D DT 804 E DA 916 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 15 N3 ? ? D DG 805 E DC 915 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 15 O2 ? ? D DG 805 E DC 915 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 15 N4 ? ? D DG 805 E DC 915 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 14 N3 ? ? D DG 806 E DC 914 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 14 O2 ? ? D DG 806 E DC 914 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 14 N4 ? ? D DG 806 E DC 914 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 13 N3 ? ? D DA 807 E DT 913 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 13 O4 ? ? D DA 807 E DT 913 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 12 N1 ? ? D DT 808 E DA 912 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 12 N6 ? ? D DT 808 E DA 912 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 11 N3 ? ? D DG 809 E DC 911 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 11 O2 ? ? D DG 809 E DC 911 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 11 N4 ? ? D DG 809 E DC 911 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 10 N3 ? ? D DG 810 E DC 910 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 10 O2 ? ? D DG 810 E DC 910 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 10 N4 ? ? D DG 810 E DC 910 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 9 N1 ? ? D DT 811 E DA 909 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 9 N6 ? ? D DT 811 E DA 909 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 8 N3 ? ? D DA 812 E DT 908 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog25 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 7 N3 ? ? D DG 813 E DC 907 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 7 O2 ? ? D DG 813 E DC 907 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 7 N4 ? ? D DG 813 E DC 907 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DDG 13 N7 ? ? ? 1_555 C 8OG 6 N2 ? ? D DDG 814 E 8OG 906 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DDG 13 O6 ? ? ? 1_555 C 8OG 6 N1 ? ? D DDG 814 E 8OG 906 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 99 ? SER A 103 ? ILE A 99 SER A 103 A 2 GLU A 106 ? ASP A 110 ? GLU A 106 ASP A 110 A 3 VAL A 3 ? PHE A 8 ? VAL A 3 PHE A 8 A 4 VAL A 140 ? SER A 145 ? VAL A 140 SER A 145 A 5 ILE A 163 ? VAL A 165 ? ILE A 163 VAL A 165 B 1 GLY A 41 ? ALA A 46 ? GLY A 41 ALA A 46 B 2 VAL A 28 ? PHE A 33 ? VAL A 28 PHE A 33 B 3 VAL A 72 ? PRO A 75 ? VAL A 72 PRO A 75 C 1 SER A 244 ? SER A 255 ? SER A 244 SER A 255 C 2 ILE A 330 ? PHE A 340 ? ILE A 330 PHE A 340 C 3 PRO A 281 ? THR A 290 ? PRO A 281 THR A 290 C 4 ILE A 295 ? THR A 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 100 ? N GLU A 100 O TYR A 108 ? O TYR A 108 A 2 3 O LEU A 109 ? O LEU A 109 N LEU A 4 ? N LEU A 4 A 3 4 N PHE A 5 ? N PHE A 5 O GLY A 143 ? O GLY A 143 A 4 5 N ILE A 144 ? N ILE A 144 O LYS A 164 ? O LYS A 164 B 1 2 O ALA A 44 ? O ALA A 44 N VAL A 30 ? N VAL A 30 B 2 3 N CYS A 31 ? N CYS A 31 O LEU A 74 ? O LEU A 74 C 1 2 N ARG A 247 ? N ARG A 247 O VAL A 335 ? O VAL A 335 C 2 3 O ARG A 332 ? O ARG A 332 N VAL A 289 ? N VAL A 289 C 3 4 N ALA A 288 ? N ALA A 288 O VAL A 296 ? O VAL A 296 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DGT 414 ? 18 'BINDING SITE FOR RESIDUE DGT A 414' AC2 Software A CA 415 ? 7 'BINDING SITE FOR RESIDUE CA A 415' AC3 Software A CA 416 ? 6 'BINDING SITE FOR RESIDUE CA A 416' AC4 Software A CA 417 ? 4 'BINDING SITE FOR RESIDUE CA A 417' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 ASP A 7 ? ASP A 7 . ? 1_555 ? 2 AC1 18 PHE A 8 ? PHE A 8 . ? 1_555 ? 3 AC1 18 TYR A 10 ? TYR A 10 . ? 1_555 ? 4 AC1 18 PHE A 11 ? PHE A 11 . ? 1_555 ? 5 AC1 18 TYR A 12 ? TYR A 12 . ? 1_555 ? 6 AC1 18 VAL A 32 ? VAL A 32 . ? 1_555 ? 7 AC1 18 ALA A 44 ? ALA A 44 . ? 1_555 ? 8 AC1 18 THR A 45 ? THR A 45 . ? 1_555 ? 9 AC1 18 TYR A 48 ? TYR A 48 . ? 1_555 ? 10 AC1 18 ARG A 51 ? ARG A 51 . ? 1_555 ? 11 AC1 18 ASP A 105 ? ASP A 105 . ? 1_555 ? 12 AC1 18 LYS A 159 ? LYS A 159 . ? 1_555 ? 13 AC1 18 HOH H . ? HOH A 375 . ? 1_555 ? 14 AC1 18 CA E . ? CA A 415 . ? 1_555 ? 15 AC1 18 CA F . ? CA A 416 . ? 1_555 ? 16 AC1 18 DDG B 13 ? DDG D 814 . ? 1_555 ? 17 AC1 18 DC C 5 ? DC E 905 . ? 1_555 ? 18 AC1 18 8OG C 6 ? 8OG E 906 . ? 1_555 ? 19 AC2 7 ASP A 7 ? ASP A 7 . ? 1_555 ? 20 AC2 7 ASP A 105 ? ASP A 105 . ? 1_555 ? 21 AC2 7 GLU A 106 ? GLU A 106 . ? 1_555 ? 22 AC2 7 DGT D . ? DGT A 414 . ? 1_555 ? 23 AC2 7 CA F . ? CA A 416 . ? 1_555 ? 24 AC2 7 HOH I . ? HOH D 373 . ? 1_555 ? 25 AC2 7 DDG B 13 ? DDG D 814 . ? 1_555 ? 26 AC3 6 ASP A 7 ? ASP A 7 . ? 1_555 ? 27 AC3 6 PHE A 8 ? PHE A 8 . ? 1_555 ? 28 AC3 6 ASP A 105 ? ASP A 105 . ? 1_555 ? 29 AC3 6 LYS A 159 ? LYS A 159 . ? 1_555 ? 30 AC3 6 DGT D . ? DGT A 414 . ? 1_555 ? 31 AC3 6 CA E . ? CA A 415 . ? 1_555 ? 32 AC4 4 ALA A 181 ? ALA A 181 . ? 1_555 ? 33 AC4 4 ILE A 186 ? ILE A 186 . ? 1_555 ? 34 AC4 4 HOH H . ? HOH A 342 . ? 1_555 ? 35 AC4 4 HOH H . ? HOH A 346 . ? 1_555 ? # _atom_sites.entry_id 3GIM _atom_sites.fract_transf_matrix[1][1] 0.010033 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008935 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018812 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 MET 157 157 157 MET MET A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 MET 216 216 216 MET MET A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 ARG 240 240 240 ARG ARG A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 MET 251 251 251 MET MET A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 PRO 263 263 263 PRO PRO A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 ILE 269 269 269 ILE ILE A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 GLU 271 271 271 GLU GLU A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 TYR 273 273 273 TYR TYR A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 LYS 278 278 278 LYS LYS A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 HIS 285 285 285 HIS HIS A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 VAL 287 287 287 VAL VAL A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 VAL 289 289 289 VAL VAL A . n A 1 290 THR 290 290 290 THR THR A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 ASP 292 292 292 ASP ASP A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 ASP 294 294 294 ASP ASP A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 ARG 300 300 300 ARG ARG A . n A 1 301 THR 301 301 301 THR THR A . n A 1 302 PHE 302 302 302 PHE PHE A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 HIS 304 304 304 HIS HIS A . n A 1 305 GLY 305 305 305 GLY GLY A . n A 1 306 ILE 306 306 306 ILE ILE A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 LYS 308 308 308 LYS LYS A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 THR 310 310 310 THR THR A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 TYR 312 312 312 TYR TYR A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 SER 315 315 315 SER SER A . n A 1 316 VAL 316 316 316 VAL VAL A . n A 1 317 LYS 317 317 317 LYS LYS A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 GLN 320 320 320 GLN GLN A . n A 1 321 LYS 321 321 321 LYS LYS A . n A 1 322 ILE 322 322 322 ILE ILE A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 GLU 324 324 324 GLU GLU A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 ASP 326 326 326 ASP ASP A . n A 1 327 GLU 327 327 327 GLU GLU A . n A 1 328 ARG 328 328 328 ARG ARG A . n A 1 329 LYS 329 329 329 LYS LYS A . n A 1 330 ILE 330 330 330 ILE ILE A . n A 1 331 ARG 331 331 331 ARG ARG A . n A 1 332 ARG 332 332 332 ARG ARG A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 VAL 335 335 335 VAL VAL A . n A 1 336 ARG 336 336 336 ARG ARG A . n A 1 337 PHE 337 337 337 PHE PHE A . n A 1 338 SER 338 338 338 SER SER A . n A 1 339 LYS 339 339 339 LYS LYS A . n A 1 340 PHE 340 340 340 PHE PHE A . n A 1 341 ILE 341 341 341 ILE ILE A . n B 2 1 DG 1 802 802 DG G D . n B 2 2 DT 2 803 803 DT T D . n B 2 3 DT 3 804 804 DT T D . n B 2 4 DG 4 805 805 DG G D . n B 2 5 DG 5 806 806 DG G D . n B 2 6 DA 6 807 807 DA A D . n B 2 7 DT 7 808 808 DT T D . n B 2 8 DG 8 809 809 DG G D . n B 2 9 DG 9 810 810 DG G D . n B 2 10 DT 10 811 811 DT T D . n B 2 11 DA 11 812 812 DA A D . n B 2 12 DG 12 813 813 DG G D . n B 2 13 DDG 13 814 814 DDG DDG D . n C 3 1 DC 1 901 901 DC C E . n C 3 2 DT 2 902 902 DT T E . n C 3 3 DA 3 903 903 DA A E . n C 3 4 DA 4 904 904 DA A E . n C 3 5 DC 5 905 905 DC C E . n C 3 6 8OG 6 906 906 8OG 8OG E . n C 3 7 DC 7 907 907 DC C E . n C 3 8 DT 8 908 908 DT T E . n C 3 9 DA 9 909 909 DA A E . n C 3 10 DC 10 910 910 DC C E . n C 3 11 DC 11 911 911 DC C E . n C 3 12 DA 12 912 912 DA A E . n C 3 13 DT 13 913 913 DT T E . n C 3 14 DC 14 914 914 DC C E . n C 3 15 DC 15 915 915 DC C E . n C 3 16 DA 16 916 916 DA A E . n C 3 17 DA 17 917 917 DA A E . n C 3 18 DC 18 918 918 DC C E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DGT 1 414 414 DGT DGT A . E 5 CA 1 415 415 CA CA A . F 5 CA 1 416 416 CA CA A . G 5 CA 1 417 417 CA CA A . H 6 HOH 1 342 1 HOH HOH A . H 6 HOH 2 343 2 HOH HOH A . H 6 HOH 3 344 4 HOH HOH A . H 6 HOH 4 346 6 HOH HOH A . H 6 HOH 5 350 12 HOH HOH A . H 6 HOH 6 352 14 HOH HOH A . H 6 HOH 7 353 16 HOH HOH A . H 6 HOH 8 355 18 HOH HOH A . H 6 HOH 9 356 19 HOH HOH A . H 6 HOH 10 357 20 HOH HOH A . H 6 HOH 11 358 22 HOH HOH A . H 6 HOH 12 359 23 HOH HOH A . H 6 HOH 13 360 24 HOH HOH A . H 6 HOH 14 362 26 HOH HOH A . H 6 HOH 15 363 28 HOH HOH A . H 6 HOH 16 364 29 HOH HOH A . H 6 HOH 17 365 30 HOH HOH A . H 6 HOH 18 366 31 HOH HOH A . H 6 HOH 19 367 32 HOH HOH A . H 6 HOH 20 368 33 HOH HOH A . H 6 HOH 21 369 34 HOH HOH A . H 6 HOH 22 370 35 HOH HOH A . H 6 HOH 23 371 36 HOH HOH A . H 6 HOH 24 372 37 HOH HOH A . H 6 HOH 25 374 40 HOH HOH A . H 6 HOH 26 375 41 HOH HOH A . H 6 HOH 27 376 42 HOH HOH A . H 6 HOH 28 377 43 HOH HOH A . H 6 HOH 29 378 44 HOH HOH A . H 6 HOH 30 379 45 HOH HOH A . H 6 HOH 31 380 47 HOH HOH A . H 6 HOH 32 382 50 HOH HOH A . I 6 HOH 1 349 10 HOH HOH D . I 6 HOH 2 373 38 HOH HOH D . J 6 HOH 1 345 5 HOH HOH E . J 6 HOH 2 347 7 HOH HOH E . J 6 HOH 3 348 8 HOH HOH E . J 6 HOH 4 351 13 HOH HOH E . J 6 HOH 5 354 17 HOH HOH E . J 6 HOH 6 361 25 HOH HOH E . J 6 HOH 7 381 49 HOH HOH E . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B DDG 13 D DDG 814 ? DG ? 2 C 8OG 6 E 8OG 906 ? DG ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4020 ? 1 MORE -34.5 ? 1 'SSA (A^2)' 21200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 53.4 ? 2 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 70.6 ? 3 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 122.0 ? 4 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 102.5 ? 5 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 75.7 ? 6 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 105.6 ? 7 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 85.5 ? 8 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 100.5 ? 9 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 88.1 ? 10 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 165.7 ? 11 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 373 ? 1_555 121.3 ? 12 OD2 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 373 ? 1_555 72.4 ? 13 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 373 ? 1_555 164.6 ? 14 OE2 ? A GLU 106 ? A GLU 106 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 373 ? 1_555 82.1 ? 15 O2A ? D DGT . ? A DGT 414 ? 1_555 CA ? E CA . ? A CA 415 ? 1_555 O ? I HOH . ? D HOH 373 ? 1_555 83.6 ? 16 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O ? A PHE 8 ? A PHE 8 ? 1_555 86.9 ? 17 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 66.7 ? 18 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 77.3 ? 19 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1G ? D DGT . ? A DGT 414 ? 1_555 127.2 ? 20 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1G ? D DGT . ? A DGT 414 ? 1_555 111.9 ? 21 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1G ? D DGT . ? A DGT 414 ? 1_555 162.3 ? 22 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 152.4 ? 23 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 89.8 ? 24 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 85.9 ? 25 O1G ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O1B ? D DGT . ? A DGT 414 ? 1_555 79.2 ? 26 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 90.6 ? 27 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 161.0 ? 28 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 84.4 ? 29 O1G ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 84.5 ? 30 O1B ? D DGT . ? A DGT 414 ? 1_555 CA ? F CA . ? A CA 416 ? 1_555 O2A ? D DGT . ? A DGT 414 ? 1_555 83.7 ? 31 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? A ILE 186 ? A ILE 186 ? 1_555 97.8 ? 32 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 342 ? 1_555 84.2 ? 33 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 342 ? 1_555 62.1 ? 34 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 346 ? 1_555 105.3 ? 35 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 346 ? 1_555 95.7 ? 36 O ? H HOH . ? A HOH 342 ? 1_555 CA ? G CA . ? A CA 417 ? 1_555 O ? H HOH . ? A HOH 346 ? 1_555 157.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-12-07 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.value' 28 5 'Structure model' '_struct_conn.pdbx_dist_value' 29 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_struct_ref_seq.db_align_beg' 42 5 'Structure model' '_struct_ref_seq.db_align_end' 43 5 'Structure model' '_struct_ref_seq_dif.details' 44 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 45 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 46 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 21.7650 18.6730 12.2320 -0.2599 -0.0896 -0.1806 0.0020 -0.0113 0.0437 1.2068 7.9912 5.2602 -0.5772 0.1191 -4.3505 -0.1452 0.4998 -0.3546 -0.1159 0.0567 0.5391 0.4666 -0.3250 -0.4889 'X-RAY DIFFRACTION' 2 ? refined 11.6660 10.5970 21.0010 0.1121 0.3945 0.2182 0.0656 0.2535 0.2158 2.7370 4.1908 2.4317 0.6437 1.0631 -1.4223 0.1534 0.6293 -0.7827 -0.7051 0.3594 1.3370 1.0439 0.0628 -1.1194 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 341 ? 1 . . . . 'X-RAY DIFFRACTION' ? 2 2 D D 814 ? 802 . . . . 'X-RAY DIFFRACTION' ? 3 2 E E 918 ? 901 . . . . 'X-RAY DIFFRACTION' ? 4 2 A A 414 ? 414 . . . . 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 AMoRE . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A HIS 304 ? B C A HIS 304 ? B N A GLY 305 ? ? 110.00 123.20 -13.20 1.70 Y 2 1 "O4'" D DT 803 ? ? "C1'" D DT 803 ? ? N1 D DT 803 ? ? 111.10 108.30 2.80 0.30 N 3 1 "C3'" D DT 804 ? ? "C2'" D DT 804 ? ? "C1'" D DT 804 ? ? 97.51 102.40 -4.89 0.80 N 4 1 "O4'" D DT 804 ? ? "C1'" D DT 804 ? ? N1 D DT 804 ? ? 111.63 108.30 3.33 0.30 N 5 1 "C3'" D DG 805 ? ? "C2'" D DG 805 ? ? "C1'" D DG 805 ? ? 96.51 102.40 -5.89 0.80 N 6 1 "O4'" D DG 805 ? ? "C1'" D DG 805 ? ? N9 D DG 805 ? ? 110.49 108.30 2.19 0.30 N 7 1 "O4'" D DG 810 ? ? "C1'" D DG 810 ? ? N9 D DG 810 ? ? 110.40 108.30 2.10 0.30 N 8 1 "O4'" D DG 813 ? ? "C1'" D DG 813 ? ? N9 D DG 813 ? ? 111.27 108.30 2.97 0.30 N 9 1 "O4'" E DA 903 ? ? "C4'" E DA 903 ? ? "C3'" E DA 903 ? ? 102.06 104.50 -2.44 0.40 N 10 1 "O4'" E DC 914 ? ? "C1'" E DC 914 ? ? N1 E DC 914 ? ? 110.48 108.30 2.18 0.30 N 11 1 "O4'" E DC 915 ? ? "C1'" E DC 915 ? ? N1 E DC 915 ? ? 110.63 108.30 2.33 0.30 N 12 1 "O4'" E DA 917 ? ? "C1'" E DA 917 ? ? N9 E DA 917 ? ? 112.43 108.30 4.13 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 21.46 68.41 2 1 PRO A 21 ? ? -52.53 -1.08 3 1 ASP A 39 ? ? 89.02 5.84 4 1 THR A 45 ? ? 171.58 164.09 5 1 LEU A 68 ? ? -142.28 57.63 6 1 ARG A 77 ? ? -112.96 68.38 7 1 GLU A 136 ? ? -165.09 2.14 8 1 LYS A 137 ? ? 48.83 25.21 9 1 SER A 145 ? ? -163.34 -168.10 10 1 ILE A 163 ? ? -167.37 119.33 11 1 ASP A 168 ? ? -37.80 -33.63 12 1 ILE A 175 ? ? -45.81 -17.69 13 1 ALA A 191 ? ? -65.42 8.28 14 1 ASP A 211 ? ? -26.55 -52.55 15 1 ASN A 234 ? ? -155.85 83.95 16 1 ASP A 277 ? ? 23.35 113.75 17 1 LYS A 278 ? ? 81.00 -43.65 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 HIS A 304 ? A 13.31 2 1 HIS A 304 ? B 19.79 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? E 8OG 906 ? PLANAR . 2 1 "C1'" ? E 8OG 906 ? PLANAR . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OG OP3 O N N 1 8OG P P N N 2 8OG OP1 O N N 3 8OG OP2 O N N 4 8OG "O5'" O N N 5 8OG "C5'" C N N 6 8OG "C4'" C N R 7 8OG "O4'" O N N 8 8OG "C3'" C N S 9 8OG "O3'" O N N 10 8OG "C2'" C N N 11 8OG "C1'" C N R 12 8OG N9 N N N 13 8OG C8 C N N 14 8OG N7 N N N 15 8OG C5 C N N 16 8OG C6 C N N 17 8OG O6 O N N 18 8OG N1 N N N 19 8OG C2 C N N 20 8OG N2 N N N 21 8OG N3 N N N 22 8OG C4 C N N 23 8OG O8 O N N 24 8OG HOP3 H N N 25 8OG HOP2 H N N 26 8OG "H5'" H N N 27 8OG "H5''" H N N 28 8OG "H4'" H N N 29 8OG "H3'" H N N 30 8OG "HO3'" H N N 31 8OG "H2'" H N N 32 8OG "H2''" H N N 33 8OG "H1'" H N N 34 8OG H7 H N N 35 8OG H1 H N N 36 8OG H21 H N N 37 8OG H22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CA CA CA N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 DA OP3 O N N 127 DA P P N N 128 DA OP1 O N N 129 DA OP2 O N N 130 DA "O5'" O N N 131 DA "C5'" C N N 132 DA "C4'" C N R 133 DA "O4'" O N N 134 DA "C3'" C N S 135 DA "O3'" O N N 136 DA "C2'" C N N 137 DA "C1'" C N R 138 DA N9 N Y N 139 DA C8 C Y N 140 DA N7 N Y N 141 DA C5 C Y N 142 DA C6 C Y N 143 DA N6 N N N 144 DA N1 N Y N 145 DA C2 C Y N 146 DA N3 N Y N 147 DA C4 C Y N 148 DA HOP3 H N N 149 DA HOP2 H N N 150 DA "H5'" H N N 151 DA "H5''" H N N 152 DA "H4'" H N N 153 DA "H3'" H N N 154 DA "HO3'" H N N 155 DA "H2'" H N N 156 DA "H2''" H N N 157 DA "H1'" H N N 158 DA H8 H N N 159 DA H61 H N N 160 DA H62 H N N 161 DA H2 H N N 162 DC OP3 O N N 163 DC P P N N 164 DC OP1 O N N 165 DC OP2 O N N 166 DC "O5'" O N N 167 DC "C5'" C N N 168 DC "C4'" C N R 169 DC "O4'" O N N 170 DC "C3'" C N S 171 DC "O3'" O N N 172 DC "C2'" C N N 173 DC "C1'" C N R 174 DC N1 N N N 175 DC C2 C N N 176 DC O2 O N N 177 DC N3 N N N 178 DC C4 C N N 179 DC N4 N N N 180 DC C5 C N N 181 DC C6 C N N 182 DC HOP3 H N N 183 DC HOP2 H N N 184 DC "H5'" H N N 185 DC "H5''" H N N 186 DC "H4'" H N N 187 DC "H3'" H N N 188 DC "HO3'" H N N 189 DC "H2'" H N N 190 DC "H2''" H N N 191 DC "H1'" H N N 192 DC H41 H N N 193 DC H42 H N N 194 DC H5 H N N 195 DC H6 H N N 196 DDG OP3 O N N 197 DDG P P N N 198 DDG OP1 O N N 199 DDG OP2 O N N 200 DDG "O5'" O N N 201 DDG "C5'" C N N 202 DDG "C4'" C N S 203 DDG "O4'" O N N 204 DDG "C3'" C N N 205 DDG "C2'" C N N 206 DDG "C1'" C N R 207 DDG N9 N Y N 208 DDG C8 C Y N 209 DDG N7 N Y N 210 DDG C5 C Y N 211 DDG C6 C N N 212 DDG O6 O N N 213 DDG N1 N N N 214 DDG C2 C N N 215 DDG N2 N N N 216 DDG N3 N N N 217 DDG C4 C Y N 218 DDG HOP3 H N N 219 DDG HOP2 H N N 220 DDG "H5'" H N N 221 DDG "H5''" H N N 222 DDG "H4'" H N N 223 DDG "H3'1" H N N 224 DDG "H3'2" H N N 225 DDG "H2'" H N N 226 DDG "H2''" H N N 227 DDG "H1'" H N N 228 DDG H8 H N N 229 DDG H1 H N N 230 DDG H21 H N N 231 DDG H22 H N N 232 DG OP3 O N N 233 DG P P N N 234 DG OP1 O N N 235 DG OP2 O N N 236 DG "O5'" O N N 237 DG "C5'" C N N 238 DG "C4'" C N R 239 DG "O4'" O N N 240 DG "C3'" C N S 241 DG "O3'" O N N 242 DG "C2'" C N N 243 DG "C1'" C N R 244 DG N9 N Y N 245 DG C8 C Y N 246 DG N7 N Y N 247 DG C5 C Y N 248 DG C6 C N N 249 DG O6 O N N 250 DG N1 N N N 251 DG C2 C N N 252 DG N2 N N N 253 DG N3 N N N 254 DG C4 C Y N 255 DG HOP3 H N N 256 DG HOP2 H N N 257 DG "H5'" H N N 258 DG "H5''" H N N 259 DG "H4'" H N N 260 DG "H3'" H N N 261 DG "HO3'" H N N 262 DG "H2'" H N N 263 DG "H2''" H N N 264 DG "H1'" H N N 265 DG H8 H N N 266 DG H1 H N N 267 DG H21 H N N 268 DG H22 H N N 269 DGT PG P N N 270 DGT O1G O N N 271 DGT O2G O N N 272 DGT O3G O N N 273 DGT O3B O N N 274 DGT PB P N S 275 DGT O1B O N N 276 DGT O2B O N N 277 DGT O3A O N N 278 DGT PA P N R 279 DGT O1A O N N 280 DGT O2A O N N 281 DGT "O5'" O N N 282 DGT "C5'" C N N 283 DGT "C4'" C N R 284 DGT "O4'" O N N 285 DGT "C3'" C N S 286 DGT "O3'" O N N 287 DGT "C2'" C N N 288 DGT "C1'" C N R 289 DGT N9 N Y N 290 DGT C8 C Y N 291 DGT N7 N Y N 292 DGT C5 C Y N 293 DGT C6 C N N 294 DGT O6 O N N 295 DGT N1 N N N 296 DGT C2 C N N 297 DGT N2 N N N 298 DGT N3 N N N 299 DGT C4 C Y N 300 DGT HO1G H N N 301 DGT HO2G H N N 302 DGT HO1B H N N 303 DGT HO1A H N N 304 DGT "H5'" H N N 305 DGT "H5'A" H N N 306 DGT "H4'" H N N 307 DGT "H3'" H N N 308 DGT "HO3'" H N N 309 DGT "H2'" H N N 310 DGT "H2'A" H N N 311 DGT "H1'" H N N 312 DGT H8 H N N 313 DGT HN2 H N N 314 DGT HN2A H N N 315 DGT H16 H N N 316 DT OP3 O N N 317 DT P P N N 318 DT OP1 O N N 319 DT OP2 O N N 320 DT "O5'" O N N 321 DT "C5'" C N N 322 DT "C4'" C N R 323 DT "O4'" O N N 324 DT "C3'" C N S 325 DT "O3'" O N N 326 DT "C2'" C N N 327 DT "C1'" C N R 328 DT N1 N N N 329 DT C2 C N N 330 DT O2 O N N 331 DT N3 N N N 332 DT C4 C N N 333 DT O4 O N N 334 DT C5 C N N 335 DT C7 C N N 336 DT C6 C N N 337 DT HOP3 H N N 338 DT HOP2 H N N 339 DT "H5'" H N N 340 DT "H5''" H N N 341 DT "H4'" H N N 342 DT "H3'" H N N 343 DT "HO3'" H N N 344 DT "H2'" H N N 345 DT "H2''" H N N 346 DT "H1'" H N N 347 DT H3 H N N 348 DT H71 H N N 349 DT H72 H N N 350 DT H73 H N N 351 DT H6 H N N 352 GLN N N N N 353 GLN CA C N S 354 GLN C C N N 355 GLN O O N N 356 GLN CB C N N 357 GLN CG C N N 358 GLN CD C N N 359 GLN OE1 O N N 360 GLN NE2 N N N 361 GLN OXT O N N 362 GLN H H N N 363 GLN H2 H N N 364 GLN HA H N N 365 GLN HB2 H N N 366 GLN HB3 H N N 367 GLN HG2 H N N 368 GLN HG3 H N N 369 GLN HE21 H N N 370 GLN HE22 H N N 371 GLN HXT H N N 372 GLU N N N N 373 GLU CA C N S 374 GLU C C N N 375 GLU O O N N 376 GLU CB C N N 377 GLU CG C N N 378 GLU CD C N N 379 GLU OE1 O N N 380 GLU OE2 O N N 381 GLU OXT O N N 382 GLU H H N N 383 GLU H2 H N N 384 GLU HA H N N 385 GLU HB2 H N N 386 GLU HB3 H N N 387 GLU HG2 H N N 388 GLU HG3 H N N 389 GLU HE2 H N N 390 GLU HXT H N N 391 GLY N N N N 392 GLY CA C N N 393 GLY C C N N 394 GLY O O N N 395 GLY OXT O N N 396 GLY H H N N 397 GLY H2 H N N 398 GLY HA2 H N N 399 GLY HA3 H N N 400 GLY HXT H N N 401 HIS N N N N 402 HIS CA C N S 403 HIS C C N N 404 HIS O O N N 405 HIS CB C N N 406 HIS CG C Y N 407 HIS ND1 N Y N 408 HIS CD2 C Y N 409 HIS CE1 C Y N 410 HIS NE2 N Y N 411 HIS OXT O N N 412 HIS H H N N 413 HIS H2 H N N 414 HIS HA H N N 415 HIS HB2 H N N 416 HIS HB3 H N N 417 HIS HD1 H N N 418 HIS HD2 H N N 419 HIS HE1 H N N 420 HIS HE2 H N N 421 HIS HXT H N N 422 HOH O O N N 423 HOH H1 H N N 424 HOH H2 H N N 425 ILE N N N N 426 ILE CA C N S 427 ILE C C N N 428 ILE O O N N 429 ILE CB C N S 430 ILE CG1 C N N 431 ILE CG2 C N N 432 ILE CD1 C N N 433 ILE OXT O N N 434 ILE H H N N 435 ILE H2 H N N 436 ILE HA H N N 437 ILE HB H N N 438 ILE HG12 H N N 439 ILE HG13 H N N 440 ILE HG21 H N N 441 ILE HG22 H N N 442 ILE HG23 H N N 443 ILE HD11 H N N 444 ILE HD12 H N N 445 ILE HD13 H N N 446 ILE HXT H N N 447 LEU N N N N 448 LEU CA C N S 449 LEU C C N N 450 LEU O O N N 451 LEU CB C N N 452 LEU CG C N N 453 LEU CD1 C N N 454 LEU CD2 C N N 455 LEU OXT O N N 456 LEU H H N N 457 LEU H2 H N N 458 LEU HA H N N 459 LEU HB2 H N N 460 LEU HB3 H N N 461 LEU HG H N N 462 LEU HD11 H N N 463 LEU HD12 H N N 464 LEU HD13 H N N 465 LEU HD21 H N N 466 LEU HD22 H N N 467 LEU HD23 H N N 468 LEU HXT H N N 469 LYS N N N N 470 LYS CA C N S 471 LYS C C N N 472 LYS O O N N 473 LYS CB C N N 474 LYS CG C N N 475 LYS CD C N N 476 LYS CE C N N 477 LYS NZ N N N 478 LYS OXT O N N 479 LYS H H N N 480 LYS H2 H N N 481 LYS HA H N N 482 LYS HB2 H N N 483 LYS HB3 H N N 484 LYS HG2 H N N 485 LYS HG3 H N N 486 LYS HD2 H N N 487 LYS HD3 H N N 488 LYS HE2 H N N 489 LYS HE3 H N N 490 LYS HZ1 H N N 491 LYS HZ2 H N N 492 LYS HZ3 H N N 493 LYS HXT H N N 494 MET N N N N 495 MET CA C N S 496 MET C C N N 497 MET O O N N 498 MET CB C N N 499 MET CG C N N 500 MET SD S N N 501 MET CE C N N 502 MET OXT O N N 503 MET H H N N 504 MET H2 H N N 505 MET HA H N N 506 MET HB2 H N N 507 MET HB3 H N N 508 MET HG2 H N N 509 MET HG3 H N N 510 MET HE1 H N N 511 MET HE2 H N N 512 MET HE3 H N N 513 MET HXT H N N 514 PHE N N N N 515 PHE CA C N S 516 PHE C C N N 517 PHE O O N N 518 PHE CB C N N 519 PHE CG C Y N 520 PHE CD1 C Y N 521 PHE CD2 C Y N 522 PHE CE1 C Y N 523 PHE CE2 C Y N 524 PHE CZ C Y N 525 PHE OXT O N N 526 PHE H H N N 527 PHE H2 H N N 528 PHE HA H N N 529 PHE HB2 H N N 530 PHE HB3 H N N 531 PHE HD1 H N N 532 PHE HD2 H N N 533 PHE HE1 H N N 534 PHE HE2 H N N 535 PHE HZ H N N 536 PHE HXT H N N 537 PRO N N N N 538 PRO CA C N S 539 PRO C C N N 540 PRO O O N N 541 PRO CB C N N 542 PRO CG C N N 543 PRO CD C N N 544 PRO OXT O N N 545 PRO H H N N 546 PRO HA H N N 547 PRO HB2 H N N 548 PRO HB3 H N N 549 PRO HG2 H N N 550 PRO HG3 H N N 551 PRO HD2 H N N 552 PRO HD3 H N N 553 PRO HXT H N N 554 SER N N N N 555 SER CA C N S 556 SER C C N N 557 SER O O N N 558 SER CB C N N 559 SER OG O N N 560 SER OXT O N N 561 SER H H N N 562 SER H2 H N N 563 SER HA H N N 564 SER HB2 H N N 565 SER HB3 H N N 566 SER HG H N N 567 SER HXT H N N 568 THR N N N N 569 THR CA C N S 570 THR C C N N 571 THR O O N N 572 THR CB C N R 573 THR OG1 O N N 574 THR CG2 C N N 575 THR OXT O N N 576 THR H H N N 577 THR H2 H N N 578 THR HA H N N 579 THR HB H N N 580 THR HG1 H N N 581 THR HG21 H N N 582 THR HG22 H N N 583 THR HG23 H N N 584 THR HXT H N N 585 TYR N N N N 586 TYR CA C N S 587 TYR C C N N 588 TYR O O N N 589 TYR CB C N N 590 TYR CG C Y N 591 TYR CD1 C Y N 592 TYR CD2 C Y N 593 TYR CE1 C Y N 594 TYR CE2 C Y N 595 TYR CZ C Y N 596 TYR OH O N N 597 TYR OXT O N N 598 TYR H H N N 599 TYR H2 H N N 600 TYR HA H N N 601 TYR HB2 H N N 602 TYR HB3 H N N 603 TYR HD1 H N N 604 TYR HD2 H N N 605 TYR HE1 H N N 606 TYR HE2 H N N 607 TYR HH H N N 608 TYR HXT H N N 609 VAL N N N N 610 VAL CA C N S 611 VAL C C N N 612 VAL O O N N 613 VAL CB C N N 614 VAL CG1 C N N 615 VAL CG2 C N N 616 VAL OXT O N N 617 VAL H H N N 618 VAL H2 H N N 619 VAL HA H N N 620 VAL HB H N N 621 VAL HG11 H N N 622 VAL HG12 H N N 623 VAL HG13 H N N 624 VAL HG21 H N N 625 VAL HG22 H N N 626 VAL HG23 H N N 627 VAL HXT H N N 628 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OG OP3 P sing N N 1 8OG OP3 HOP3 sing N N 2 8OG P OP1 doub N N 3 8OG P OP2 sing N N 4 8OG P "O5'" sing N N 5 8OG OP2 HOP2 sing N N 6 8OG "O5'" "C5'" sing N N 7 8OG "C5'" "C4'" sing N N 8 8OG "C5'" "H5'" sing N N 9 8OG "C5'" "H5''" sing N N 10 8OG "C4'" "O4'" sing N N 11 8OG "C4'" "C3'" sing N N 12 8OG "C4'" "H4'" sing N N 13 8OG "O4'" "C1'" sing N N 14 8OG "C3'" "O3'" sing N N 15 8OG "C3'" "C2'" sing N N 16 8OG "C3'" "H3'" sing N N 17 8OG "O3'" "HO3'" sing N N 18 8OG "C2'" "C1'" sing N N 19 8OG "C2'" "H2'" sing N N 20 8OG "C2'" "H2''" sing N N 21 8OG "C1'" N9 sing N N 22 8OG "C1'" "H1'" sing N N 23 8OG N9 C8 sing N N 24 8OG N9 C4 sing N N 25 8OG C8 N7 sing N N 26 8OG C8 O8 doub N N 27 8OG N7 C5 sing N N 28 8OG N7 H7 sing N N 29 8OG C5 C6 sing N N 30 8OG C5 C4 doub N N 31 8OG C6 O6 doub N N 32 8OG C6 N1 sing N N 33 8OG N1 C2 sing N N 34 8OG N1 H1 sing N N 35 8OG C2 N2 sing N N 36 8OG C2 N3 doub N N 37 8OG N2 H21 sing N N 38 8OG N2 H22 sing N N 39 8OG N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 DA OP3 P sing N N 123 DA OP3 HOP3 sing N N 124 DA P OP1 doub N N 125 DA P OP2 sing N N 126 DA P "O5'" sing N N 127 DA OP2 HOP2 sing N N 128 DA "O5'" "C5'" sing N N 129 DA "C5'" "C4'" sing N N 130 DA "C5'" "H5'" sing N N 131 DA "C5'" "H5''" sing N N 132 DA "C4'" "O4'" sing N N 133 DA "C4'" "C3'" sing N N 134 DA "C4'" "H4'" sing N N 135 DA "O4'" "C1'" sing N N 136 DA "C3'" "O3'" sing N N 137 DA "C3'" "C2'" sing N N 138 DA "C3'" "H3'" sing N N 139 DA "O3'" "HO3'" sing N N 140 DA "C2'" "C1'" sing N N 141 DA "C2'" "H2'" sing N N 142 DA "C2'" "H2''" sing N N 143 DA "C1'" N9 sing N N 144 DA "C1'" "H1'" sing N N 145 DA N9 C8 sing Y N 146 DA N9 C4 sing Y N 147 DA C8 N7 doub Y N 148 DA C8 H8 sing N N 149 DA N7 C5 sing Y N 150 DA C5 C6 sing Y N 151 DA C5 C4 doub Y N 152 DA C6 N6 sing N N 153 DA C6 N1 doub Y N 154 DA N6 H61 sing N N 155 DA N6 H62 sing N N 156 DA N1 C2 sing Y N 157 DA C2 N3 doub Y N 158 DA C2 H2 sing N N 159 DA N3 C4 sing Y N 160 DC OP3 P sing N N 161 DC OP3 HOP3 sing N N 162 DC P OP1 doub N N 163 DC P OP2 sing N N 164 DC P "O5'" sing N N 165 DC OP2 HOP2 sing N N 166 DC "O5'" "C5'" sing N N 167 DC "C5'" "C4'" sing N N 168 DC "C5'" "H5'" sing N N 169 DC "C5'" "H5''" sing N N 170 DC "C4'" "O4'" sing N N 171 DC "C4'" "C3'" sing N N 172 DC "C4'" "H4'" sing N N 173 DC "O4'" "C1'" sing N N 174 DC "C3'" "O3'" sing N N 175 DC "C3'" "C2'" sing N N 176 DC "C3'" "H3'" sing N N 177 DC "O3'" "HO3'" sing N N 178 DC "C2'" "C1'" sing N N 179 DC "C2'" "H2'" sing N N 180 DC "C2'" "H2''" sing N N 181 DC "C1'" N1 sing N N 182 DC "C1'" "H1'" sing N N 183 DC N1 C2 sing N N 184 DC N1 C6 sing N N 185 DC C2 O2 doub N N 186 DC C2 N3 sing N N 187 DC N3 C4 doub N N 188 DC C4 N4 sing N N 189 DC C4 C5 sing N N 190 DC N4 H41 sing N N 191 DC N4 H42 sing N N 192 DC C5 C6 doub N N 193 DC C5 H5 sing N N 194 DC C6 H6 sing N N 195 DDG OP3 P sing N N 196 DDG OP3 HOP3 sing N N 197 DDG P OP1 doub N N 198 DDG P OP2 sing N N 199 DDG P "O5'" sing N N 200 DDG OP2 HOP2 sing N N 201 DDG "O5'" "C5'" sing N N 202 DDG "C5'" "C4'" sing N N 203 DDG "C5'" "H5'" sing N N 204 DDG "C5'" "H5''" sing N N 205 DDG "C4'" "O4'" sing N N 206 DDG "C4'" "C3'" sing N N 207 DDG "C4'" "H4'" sing N N 208 DDG "O4'" "C1'" sing N N 209 DDG "C3'" "C2'" sing N N 210 DDG "C3'" "H3'1" sing N N 211 DDG "C3'" "H3'2" sing N N 212 DDG "C2'" "C1'" sing N N 213 DDG "C2'" "H2'" sing N N 214 DDG "C2'" "H2''" sing N N 215 DDG "C1'" N9 sing N N 216 DDG "C1'" "H1'" sing N N 217 DDG N9 C8 sing Y N 218 DDG N9 C4 sing Y N 219 DDG C8 N7 doub Y N 220 DDG C8 H8 sing N N 221 DDG N7 C5 sing Y N 222 DDG C5 C6 sing N N 223 DDG C5 C4 doub Y N 224 DDG C6 O6 doub N N 225 DDG C6 N1 sing N N 226 DDG N1 C2 sing N N 227 DDG N1 H1 sing N N 228 DDG C2 N2 sing N N 229 DDG C2 N3 doub N N 230 DDG N2 H21 sing N N 231 DDG N2 H22 sing N N 232 DDG N3 C4 sing N N 233 DG OP3 P sing N N 234 DG OP3 HOP3 sing N N 235 DG P OP1 doub N N 236 DG P OP2 sing N N 237 DG P "O5'" sing N N 238 DG OP2 HOP2 sing N N 239 DG "O5'" "C5'" sing N N 240 DG "C5'" "C4'" sing N N 241 DG "C5'" "H5'" sing N N 242 DG "C5'" "H5''" sing N N 243 DG "C4'" "O4'" sing N N 244 DG "C4'" "C3'" sing N N 245 DG "C4'" "H4'" sing N N 246 DG "O4'" "C1'" sing N N 247 DG "C3'" "O3'" sing N N 248 DG "C3'" "C2'" sing N N 249 DG "C3'" "H3'" sing N N 250 DG "O3'" "HO3'" sing N N 251 DG "C2'" "C1'" sing N N 252 DG "C2'" "H2'" sing N N 253 DG "C2'" "H2''" sing N N 254 DG "C1'" N9 sing N N 255 DG "C1'" "H1'" sing N N 256 DG N9 C8 sing Y N 257 DG N9 C4 sing Y N 258 DG C8 N7 doub Y N 259 DG C8 H8 sing N N 260 DG N7 C5 sing Y N 261 DG C5 C6 sing N N 262 DG C5 C4 doub Y N 263 DG C6 O6 doub N N 264 DG C6 N1 sing N N 265 DG N1 C2 sing N N 266 DG N1 H1 sing N N 267 DG C2 N2 sing N N 268 DG C2 N3 doub N N 269 DG N2 H21 sing N N 270 DG N2 H22 sing N N 271 DG N3 C4 sing N N 272 DGT PG O1G sing N N 273 DGT PG O2G sing N N 274 DGT O1G HO1G sing N N 275 DGT O2G HO2G sing N N 276 DGT O3G PG doub N N 277 DGT O3B PG sing N N 278 DGT PB O3B sing N N 279 DGT PB O1B sing N N 280 DGT PB O3A sing N N 281 DGT O1B HO1B sing N N 282 DGT O2B PB doub N N 283 DGT PA O3A sing N N 284 DGT PA O1A sing N N 285 DGT O1A HO1A sing N N 286 DGT O2A PA doub N N 287 DGT "O5'" PA sing N N 288 DGT "O5'" "C5'" sing N N 289 DGT "C5'" "H5'" sing N N 290 DGT "C5'" "H5'A" sing N N 291 DGT "C4'" "C5'" sing N N 292 DGT "C4'" "H4'" sing N N 293 DGT "O4'" "C4'" sing N N 294 DGT "C3'" "C4'" sing N N 295 DGT "C3'" "O3'" sing N N 296 DGT "C3'" "H3'" sing N N 297 DGT "O3'" "HO3'" sing N N 298 DGT "C2'" "C3'" sing N N 299 DGT "C2'" "C1'" sing N N 300 DGT "C2'" "H2'" sing N N 301 DGT "C2'" "H2'A" sing N N 302 DGT "C1'" "O4'" sing N N 303 DGT "C1'" "H1'" sing N N 304 DGT N9 "C1'" sing N N 305 DGT N9 C4 sing Y N 306 DGT C8 N9 sing Y N 307 DGT C8 H8 sing N N 308 DGT N7 C8 doub Y N 309 DGT N7 C5 sing Y N 310 DGT C5 C6 sing N N 311 DGT C5 C4 doub Y N 312 DGT C6 N1 sing N N 313 DGT O6 C6 doub N N 314 DGT N1 C2 sing N N 315 DGT C2 N3 doub N N 316 DGT C2 N2 sing N N 317 DGT N2 HN2 sing N N 318 DGT N2 HN2A sing N N 319 DGT C4 N3 sing N N 320 DGT N1 H16 sing N N 321 DT OP3 P sing N N 322 DT OP3 HOP3 sing N N 323 DT P OP1 doub N N 324 DT P OP2 sing N N 325 DT P "O5'" sing N N 326 DT OP2 HOP2 sing N N 327 DT "O5'" "C5'" sing N N 328 DT "C5'" "C4'" sing N N 329 DT "C5'" "H5'" sing N N 330 DT "C5'" "H5''" sing N N 331 DT "C4'" "O4'" sing N N 332 DT "C4'" "C3'" sing N N 333 DT "C4'" "H4'" sing N N 334 DT "O4'" "C1'" sing N N 335 DT "C3'" "O3'" sing N N 336 DT "C3'" "C2'" sing N N 337 DT "C3'" "H3'" sing N N 338 DT "O3'" "HO3'" sing N N 339 DT "C2'" "C1'" sing N N 340 DT "C2'" "H2'" sing N N 341 DT "C2'" "H2''" sing N N 342 DT "C1'" N1 sing N N 343 DT "C1'" "H1'" sing N N 344 DT N1 C2 sing N N 345 DT N1 C6 sing N N 346 DT C2 O2 doub N N 347 DT C2 N3 sing N N 348 DT N3 C4 sing N N 349 DT N3 H3 sing N N 350 DT C4 O4 doub N N 351 DT C4 C5 sing N N 352 DT C5 C7 sing N N 353 DT C5 C6 doub N N 354 DT C7 H71 sing N N 355 DT C7 H72 sing N N 356 DT C7 H73 sing N N 357 DT C6 H6 sing N N 358 GLN N CA sing N N 359 GLN N H sing N N 360 GLN N H2 sing N N 361 GLN CA C sing N N 362 GLN CA CB sing N N 363 GLN CA HA sing N N 364 GLN C O doub N N 365 GLN C OXT sing N N 366 GLN CB CG sing N N 367 GLN CB HB2 sing N N 368 GLN CB HB3 sing N N 369 GLN CG CD sing N N 370 GLN CG HG2 sing N N 371 GLN CG HG3 sing N N 372 GLN CD OE1 doub N N 373 GLN CD NE2 sing N N 374 GLN NE2 HE21 sing N N 375 GLN NE2 HE22 sing N N 376 GLN OXT HXT sing N N 377 GLU N CA sing N N 378 GLU N H sing N N 379 GLU N H2 sing N N 380 GLU CA C sing N N 381 GLU CA CB sing N N 382 GLU CA HA sing N N 383 GLU C O doub N N 384 GLU C OXT sing N N 385 GLU CB CG sing N N 386 GLU CB HB2 sing N N 387 GLU CB HB3 sing N N 388 GLU CG CD sing N N 389 GLU CG HG2 sing N N 390 GLU CG HG3 sing N N 391 GLU CD OE1 doub N N 392 GLU CD OE2 sing N N 393 GLU OE2 HE2 sing N N 394 GLU OXT HXT sing N N 395 GLY N CA sing N N 396 GLY N H sing N N 397 GLY N H2 sing N N 398 GLY CA C sing N N 399 GLY CA HA2 sing N N 400 GLY CA HA3 sing N N 401 GLY C O doub N N 402 GLY C OXT sing N N 403 GLY OXT HXT sing N N 404 HIS N CA sing N N 405 HIS N H sing N N 406 HIS N H2 sing N N 407 HIS CA C sing N N 408 HIS CA CB sing N N 409 HIS CA HA sing N N 410 HIS C O doub N N 411 HIS C OXT sing N N 412 HIS CB CG sing N N 413 HIS CB HB2 sing N N 414 HIS CB HB3 sing N N 415 HIS CG ND1 sing Y N 416 HIS CG CD2 doub Y N 417 HIS ND1 CE1 doub Y N 418 HIS ND1 HD1 sing N N 419 HIS CD2 NE2 sing Y N 420 HIS CD2 HD2 sing N N 421 HIS CE1 NE2 sing Y N 422 HIS CE1 HE1 sing N N 423 HIS NE2 HE2 sing N N 424 HIS OXT HXT sing N N 425 HOH O H1 sing N N 426 HOH O H2 sing N N 427 ILE N CA sing N N 428 ILE N H sing N N 429 ILE N H2 sing N N 430 ILE CA C sing N N 431 ILE CA CB sing N N 432 ILE CA HA sing N N 433 ILE C O doub N N 434 ILE C OXT sing N N 435 ILE CB CG1 sing N N 436 ILE CB CG2 sing N N 437 ILE CB HB sing N N 438 ILE CG1 CD1 sing N N 439 ILE CG1 HG12 sing N N 440 ILE CG1 HG13 sing N N 441 ILE CG2 HG21 sing N N 442 ILE CG2 HG22 sing N N 443 ILE CG2 HG23 sing N N 444 ILE CD1 HD11 sing N N 445 ILE CD1 HD12 sing N N 446 ILE CD1 HD13 sing N N 447 ILE OXT HXT sing N N 448 LEU N CA sing N N 449 LEU N H sing N N 450 LEU N H2 sing N N 451 LEU CA C sing N N 452 LEU CA CB sing N N 453 LEU CA HA sing N N 454 LEU C O doub N N 455 LEU C OXT sing N N 456 LEU CB CG sing N N 457 LEU CB HB2 sing N N 458 LEU CB HB3 sing N N 459 LEU CG CD1 sing N N 460 LEU CG CD2 sing N N 461 LEU CG HG sing N N 462 LEU CD1 HD11 sing N N 463 LEU CD1 HD12 sing N N 464 LEU CD1 HD13 sing N N 465 LEU CD2 HD21 sing N N 466 LEU CD2 HD22 sing N N 467 LEU CD2 HD23 sing N N 468 LEU OXT HXT sing N N 469 LYS N CA sing N N 470 LYS N H sing N N 471 LYS N H2 sing N N 472 LYS CA C sing N N 473 LYS CA CB sing N N 474 LYS CA HA sing N N 475 LYS C O doub N N 476 LYS C OXT sing N N 477 LYS CB CG sing N N 478 LYS CB HB2 sing N N 479 LYS CB HB3 sing N N 480 LYS CG CD sing N N 481 LYS CG HG2 sing N N 482 LYS CG HG3 sing N N 483 LYS CD CE sing N N 484 LYS CD HD2 sing N N 485 LYS CD HD3 sing N N 486 LYS CE NZ sing N N 487 LYS CE HE2 sing N N 488 LYS CE HE3 sing N N 489 LYS NZ HZ1 sing N N 490 LYS NZ HZ2 sing N N 491 LYS NZ HZ3 sing N N 492 LYS OXT HXT sing N N 493 MET N CA sing N N 494 MET N H sing N N 495 MET N H2 sing N N 496 MET CA C sing N N 497 MET CA CB sing N N 498 MET CA HA sing N N 499 MET C O doub N N 500 MET C OXT sing N N 501 MET CB CG sing N N 502 MET CB HB2 sing N N 503 MET CB HB3 sing N N 504 MET CG SD sing N N 505 MET CG HG2 sing N N 506 MET CG HG3 sing N N 507 MET SD CE sing N N 508 MET CE HE1 sing N N 509 MET CE HE2 sing N N 510 MET CE HE3 sing N N 511 MET OXT HXT sing N N 512 PHE N CA sing N N 513 PHE N H sing N N 514 PHE N H2 sing N N 515 PHE CA C sing N N 516 PHE CA CB sing N N 517 PHE CA HA sing N N 518 PHE C O doub N N 519 PHE C OXT sing N N 520 PHE CB CG sing N N 521 PHE CB HB2 sing N N 522 PHE CB HB3 sing N N 523 PHE CG CD1 doub Y N 524 PHE CG CD2 sing Y N 525 PHE CD1 CE1 sing Y N 526 PHE CD1 HD1 sing N N 527 PHE CD2 CE2 doub Y N 528 PHE CD2 HD2 sing N N 529 PHE CE1 CZ doub Y N 530 PHE CE1 HE1 sing N N 531 PHE CE2 CZ sing Y N 532 PHE CE2 HE2 sing N N 533 PHE CZ HZ sing N N 534 PHE OXT HXT sing N N 535 PRO N CA sing N N 536 PRO N CD sing N N 537 PRO N H sing N N 538 PRO CA C sing N N 539 PRO CA CB sing N N 540 PRO CA HA sing N N 541 PRO C O doub N N 542 PRO C OXT sing N N 543 PRO CB CG sing N N 544 PRO CB HB2 sing N N 545 PRO CB HB3 sing N N 546 PRO CG CD sing N N 547 PRO CG HG2 sing N N 548 PRO CG HG3 sing N N 549 PRO CD HD2 sing N N 550 PRO CD HD3 sing N N 551 PRO OXT HXT sing N N 552 SER N CA sing N N 553 SER N H sing N N 554 SER N H2 sing N N 555 SER CA C sing N N 556 SER CA CB sing N N 557 SER CA HA sing N N 558 SER C O doub N N 559 SER C OXT sing N N 560 SER CB OG sing N N 561 SER CB HB2 sing N N 562 SER CB HB3 sing N N 563 SER OG HG sing N N 564 SER OXT HXT sing N N 565 THR N CA sing N N 566 THR N H sing N N 567 THR N H2 sing N N 568 THR CA C sing N N 569 THR CA CB sing N N 570 THR CA HA sing N N 571 THR C O doub N N 572 THR C OXT sing N N 573 THR CB OG1 sing N N 574 THR CB CG2 sing N N 575 THR CB HB sing N N 576 THR OG1 HG1 sing N N 577 THR CG2 HG21 sing N N 578 THR CG2 HG22 sing N N 579 THR CG2 HG23 sing N N 580 THR OXT HXT sing N N 581 TYR N CA sing N N 582 TYR N H sing N N 583 TYR N H2 sing N N 584 TYR CA C sing N N 585 TYR CA CB sing N N 586 TYR CA HA sing N N 587 TYR C O doub N N 588 TYR C OXT sing N N 589 TYR CB CG sing N N 590 TYR CB HB2 sing N N 591 TYR CB HB3 sing N N 592 TYR CG CD1 doub Y N 593 TYR CG CD2 sing Y N 594 TYR CD1 CE1 sing Y N 595 TYR CD1 HD1 sing N N 596 TYR CD2 CE2 doub Y N 597 TYR CD2 HD2 sing N N 598 TYR CE1 CZ doub Y N 599 TYR CE1 HE1 sing N N 600 TYR CE2 CZ sing Y N 601 TYR CE2 HE2 sing N N 602 TYR CZ OH sing N N 603 TYR OH HH sing N N 604 TYR OXT HXT sing N N 605 VAL N CA sing N N 606 VAL N H sing N N 607 VAL N H2 sing N N 608 VAL CA C sing N N 609 VAL CA CB sing N N 610 VAL CA HA sing N N 611 VAL C O doub N N 612 VAL C OXT sing N N 613 VAL CB CG1 sing N N 614 VAL CB CG2 sing N N 615 VAL CB HB sing N N 616 VAL CG1 HG11 sing N N 617 VAL CG1 HG12 sing N N 618 VAL CG1 HG13 sing N N 619 VAL CG2 HG21 sing N N 620 VAL CG2 HG22 sing N N 621 VAL CG2 HG23 sing N N 622 VAL OXT HXT sing N N 623 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GIM 'double helix' 3GIM 'b-form double helix' 3GIM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 18 1_555 -0.341 -0.140 -0.409 -8.273 -1.419 1.251 1 D_DG802:DC918_E D 802 ? E 918 ? 19 1 1 B DT 3 1_555 C DA 16 1_555 0.072 -0.287 -0.775 4.616 -7.735 -7.470 2 D_DT804:DA916_E D 804 ? E 916 ? 20 1 1 B DG 4 1_555 C DC 15 1_555 -0.483 -0.017 -0.192 3.583 -2.979 -5.044 3 D_DG805:DC915_E D 805 ? E 915 ? 19 1 1 B DG 5 1_555 C DC 14 1_555 -0.189 0.041 0.357 10.005 -6.164 5.150 4 D_DG806:DC914_E D 806 ? E 914 ? 19 1 1 B DA 6 1_555 C DT 13 1_555 0.211 0.188 -0.131 -3.355 -12.163 7.003 5 D_DA807:DT913_E D 807 ? E 913 ? 20 1 1 B DT 7 1_555 C DA 12 1_555 0.108 0.136 -0.281 3.249 -6.403 -9.723 6 D_DT808:DA912_E D 808 ? E 912 ? 20 1 1 B DG 8 1_555 C DC 11 1_555 0.260 0.004 -0.723 -12.565 -10.641 2.292 7 D_DG809:DC911_E D 809 ? E 911 ? 19 1 1 B DG 9 1_555 C DC 10 1_555 -0.370 0.034 -0.232 -13.019 -7.571 1.396 8 D_DG810:DC910_E D 810 ? E 910 ? 19 1 1 B DT 10 1_555 C DA 9 1_555 -0.007 -0.217 0.168 -7.944 -5.969 -0.740 9 D_DT811:DA909_E D 811 ? E 909 ? 20 1 1 B DA 11 1_555 C DT 8 1_555 -0.428 0.014 0.077 -0.548 -6.281 11.650 10 D_DA812:DT908_E D 812 ? E 908 ? ? 1 1 B DG 12 1_555 C DC 7 1_555 -0.575 0.006 0.413 5.815 -15.938 9.871 11 D_DG813:DC907_E D 813 ? E 907 ? 19 1 1 B DDG 13 1_555 C 8OG 6 1_555 -1.246 -3.550 -0.178 13.897 13.652 85.097 12 D_DDG814:8OG906_E D 814 ? E 906 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 18 1_555 B DT 3 1_555 C DA 16 1_555 -1.427 0.288 6.328 -3.478 1.068 69.759 0.177 1.005 6.388 0.934 3.039 69.842 1 DD_DG802DT804:DA916DC918_EE D 802 ? E 918 ? D 804 ? E 916 ? 1 B DT 3 1_555 C DA 16 1_555 B DG 4 1_555 C DC 15 1_555 0.659 0.728 3.377 -4.299 8.005 33.115 -0.080 -1.824 3.348 13.725 7.372 34.305 2 DD_DT804DG805:DC915DA916_EE D 804 ? E 916 ? D 805 ? E 915 ? 1 B DG 4 1_555 C DC 15 1_555 B DG 5 1_555 C DC 14 1_555 -0.437 0.298 3.061 -9.819 3.739 36.751 0.004 -0.521 3.087 5.786 15.196 38.174 3 DD_DG805DG806:DC914DC915_EE D 805 ? E 915 ? D 806 ? E 914 ? 1 B DG 5 1_555 C DC 14 1_555 B DA 6 1_555 C DT 13 1_555 -0.271 0.032 3.619 2.563 3.938 38.815 -0.475 0.745 3.580 5.898 -3.839 39.088 4 DD_DG806DA807:DT913DC914_EE D 806 ? E 914 ? D 807 ? E 913 ? 1 B DA 6 1_555 C DT 13 1_555 B DT 7 1_555 C DA 12 1_555 -0.506 -0.417 3.225 1.816 4.465 28.039 -1.842 1.435 3.084 9.130 -3.713 28.442 5 DD_DA807DT808:DA912DT913_EE D 807 ? E 913 ? D 808 ? E 912 ? 1 B DT 7 1_555 C DA 12 1_555 B DG 8 1_555 C DC 11 1_555 1.100 -0.469 3.830 5.833 8.595 33.496 -2.310 -0.789 3.734 14.487 -9.831 35.025 6 DD_DT808DG809:DC911DA912_EE D 808 ? E 912 ? D 809 ? E 911 ? 1 B DG 8 1_555 C DC 11 1_555 B DG 9 1_555 C DC 10 1_555 -0.583 -0.432 3.244 -6.013 3.756 34.821 -1.258 0.076 3.234 6.198 9.921 35.513 7 DD_DG809DG810:DC910DC911_EE D 809 ? E 911 ? D 810 ? E 910 ? 1 B DG 9 1_555 C DC 10 1_555 B DT 10 1_555 C DA 9 1_555 0.168 -0.470 3.355 -2.048 2.879 31.480 -1.401 -0.693 3.283 5.286 3.759 31.673 8 DD_DG810DT811:DA909DC910_EE D 810 ? E 910 ? D 811 ? E 909 ? 1 B DT 10 1_555 C DA 9 1_555 B DA 11 1_555 C DT 8 1_555 0.820 -0.246 3.084 1.924 4.781 30.524 -1.335 -1.185 3.056 9.000 -3.622 30.946 9 DD_DT811DA812:DT908DA909_EE D 811 ? E 909 ? D 812 ? E 908 ? 1 B DA 11 1_555 C DT 8 1_555 B DG 12 1_555 C DC 7 1_555 0.156 -0.704 3.117 -5.897 9.915 27.100 -3.327 -1.462 2.613 20.046 11.922 29.410 10 DD_DA812DG813:DC907DT908_EE D 812 ? E 908 ? D 813 ? E 907 ? 1 B DG 12 1_555 C DC 7 1_555 B DDG 13 1_555 C 8OG 6 1_555 0.239 -3.800 1.055 -173.928 22.539 108.574 -1.931 -0.357 0.433 11.325 87.394 177.305 11 DD_DG813DDG814:8OG906DC907_EE D 813 ? E 907 ? D 814 ? E 906 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" DGT 5 'CALCIUM ION' CA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GIK _pdbx_initial_refinement_model.details 'PDB entry 3GIK' #