HEADER TRANSPORT PROTEIN 07-MAR-09 3GJ5 TITLE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF4 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GTPASE RAN, RAS-RELATED NUCLEAR PROTEIN, RAS-LIKE PROTEIN COMPND 5 TC4, ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: NUP153 - ZINC FINGER MODULE 4: UNP RESIDUES 848-876; COMPND 12 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: NUP153; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS G PROTEIN, GDP, RAN, NUP153, NUCLEAR PORE, ZINC FINGER, ACETYLATION, KEYWDS 2 CYTOPLASM, GTP-BINDING, HOST-VIRUS INTERACTION, ISOPEPTIDE BOND, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTEIN KEYWDS 4 TRANSPORT, TRANSPORT, UBL CONJUGATION, DNA-BINDING, METAL-BINDING, KEYWDS 5 MRNA TRANSPORT, NUCLEAR PORE COMPLEX, TRANSLOCATION, ZINC, ZINC- KEYWDS 6 FINGER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PARTRIDGE,T.U.SCHWARTZ REVDAT 3 06-SEP-23 3GJ5 1 REMARK REVDAT 2 20-OCT-21 3GJ5 1 REMARK SEQADV LINK REVDAT 1 04-AUG-09 3GJ5 0 JRNL AUTH J.R.PARTRIDGE,T.U.SCHWARTZ JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING JRNL TITL 2 ZINC FINGER DOMAIN. JRNL REF J.MOL.BIOL. V. 391 375 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19505478 JRNL DOI 10.1016/J.JMB.2009.06.011 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 53848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6724 - 4.7751 0.94 2669 149 0.1860 0.2044 REMARK 3 2 4.7751 - 3.7908 0.95 2643 152 0.1704 0.1806 REMARK 3 3 3.7908 - 3.3117 0.97 2686 139 0.1913 0.2087 REMARK 3 4 3.3117 - 3.0090 0.98 2665 159 0.1989 0.2377 REMARK 3 5 3.0090 - 2.7934 0.98 2721 140 0.2147 0.2710 REMARK 3 6 2.7934 - 2.6287 0.99 2718 156 0.2178 0.2517 REMARK 3 7 2.6287 - 2.4971 0.99 2703 153 0.2006 0.2284 REMARK 3 8 2.4971 - 2.3884 0.99 2707 137 0.1879 0.2390 REMARK 3 9 2.3884 - 2.2964 0.99 2732 146 0.1953 0.2404 REMARK 3 10 2.2964 - 2.2172 0.99 2731 139 0.1872 0.2431 REMARK 3 11 2.2172 - 2.1479 0.99 2709 134 0.1872 0.2569 REMARK 3 12 2.1479 - 2.0865 0.99 2726 148 0.1786 0.2444 REMARK 3 13 2.0865 - 2.0315 0.99 2703 146 0.1949 0.2109 REMARK 3 14 2.0315 - 1.9820 0.99 2728 132 0.1929 0.2428 REMARK 3 15 1.9820 - 1.9369 0.99 2710 152 0.2089 0.2591 REMARK 3 16 1.9369 - 1.8957 0.99 2738 128 0.2119 0.2823 REMARK 3 17 1.8957 - 1.8578 0.99 2656 144 0.2194 0.2580 REMARK 3 18 1.8578 - 1.8227 0.98 2712 147 0.2283 0.2935 REMARK 3 19 1.8227 - 1.7900 0.90 2465 125 0.2436 0.2771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 63.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3734 REMARK 3 ANGLE : 1.073 5068 REMARK 3 CHIRALITY : 0.069 562 REMARK 3 PLANARITY : 0.005 636 REMARK 3 DIHEDRAL : 14.711 1356 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 50.5799 -4.6085 -3.0582 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2125 REMARK 3 T33: 0.2201 T12: -0.0011 REMARK 3 T13: -0.0042 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.0703 L22: 0.6261 REMARK 3 L33: 0.8058 L12: -0.3242 REMARK 3 L13: 0.3602 L23: 0.1690 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: -0.1000 S13: 0.0772 REMARK 3 S21: 0.0733 S22: -0.0116 S23: -0.0554 REMARK 3 S31: -0.0279 S32: -0.0481 S33: 0.0696 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 BIS-TRIS PH 6.5, 18-20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.67150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 GLY B 843 REMARK 465 PRO B 844 REMARK 465 LEU B 845 REMARK 465 GLY B 846 REMARK 465 SER B 847 REMARK 465 PRO B 874 REMARK 465 GLY B 875 REMARK 465 THR B 876 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 HIS C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 GLY C 5 REMARK 465 GLU C 6 REMARK 465 PRO C 7 REMARK 465 LEU C 209 REMARK 465 PRO C 210 REMARK 465 ASP C 211 REMARK 465 GLU C 212 REMARK 465 ASP C 213 REMARK 465 ASP C 214 REMARK 465 ASP C 215 REMARK 465 LEU C 216 REMARK 465 GLY D 843 REMARK 465 PRO D 844 REMARK 465 LEU D 845 REMARK 465 GLY D 846 REMARK 465 SER D 847 REMARK 465 PRO D 874 REMARK 465 GLY D 875 REMARK 465 THR D 876 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 -122.76 60.94 REMARK 500 LEU B 856 2.68 80.16 REMARK 500 GLU C 113 -135.34 65.71 REMARK 500 ASN C 114 32.61 -89.78 REMARK 500 LYS C 123 30.77 77.28 REMARK 500 ASN C 143 27.74 82.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GDP A 302 O1B 90.9 REMARK 620 3 HOH A 506 O 86.7 94.9 REMARK 620 4 HOH A 507 O 94.0 86.4 178.5 REMARK 620 5 HOH A 508 O 172.9 92.9 87.0 92.2 REMARK 620 6 HOH A 509 O 88.2 175.1 89.8 88.8 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 852 SG REMARK 620 2 CYS B 855 SG 114.2 REMARK 620 3 CYS B 866 SG 109.5 103.1 REMARK 620 4 CYS B 869 SG 101.3 116.8 112.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 24 OG1 REMARK 620 2 GDP C 302 O1B 90.4 REMARK 620 3 HOH C 510 O 86.5 174.6 REMARK 620 4 HOH C 511 O 175.5 90.4 93.1 REMARK 620 5 HOH C 512 O 86.0 96.3 87.8 89.5 REMARK 620 6 HOH C 513 O 91.6 86.2 89.5 92.8 176.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 852 SG REMARK 620 2 CYS D 855 SG 114.1 REMARK 620 3 CYS D 866 SG 109.8 102.5 REMARK 620 4 CYS D 869 SG 101.9 116.8 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RANGDP-NUP153ZNF2 COMPLEX REMARK 900 RELATED ID: 2GQE RELATED DB: PDB REMARK 900 MOLECULAR CHARACTERIZATION OF THE RAN BINDING ZINC FINGER DOMAIN REMARK 900 RELATED ID: 1BYU RELATED DB: PDB REMARK 900 CANINE GDP-RAN REMARK 900 RELATED ID: 3GJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN REMARK 900 RELATED ID: 3GJ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN IN COMPLEX WITH NUP153 - REMARK 900 ZINC FINGER MODULE 2 REMARK 900 RELATED ID: 3GJ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 3 REMARK 900 RELATED ID: 3GJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 1 REMARK 900 RELATED ID: 3GJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 12 REMARK 900 RELATED ID: 3GJ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 34 DBREF 3GJ5 A 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ5 B 848 876 UNP P49791 NU153_RAT 848 876 DBREF 3GJ5 C 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ5 D 848 876 UNP P49791 NU153_RAT 848 876 SEQADV 3GJ5 GLY A -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 PRO A -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 HIS A -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 MET A -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 ALA A 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 SER A 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 SER A 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ5 GLY B 843 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 PRO B 844 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 LEU B 845 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 GLY B 846 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 SER B 847 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 GLY C -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 PRO C -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 HIS C -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 MET C -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 ALA C 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 SER C 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ5 SER C 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ5 GLY D 843 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 PRO D 844 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 LEU D 845 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 GLY D 846 UNP P49791 EXPRESSION TAG SEQADV 3GJ5 SER D 847 UNP P49791 EXPRESSION TAG SEQRES 1 A 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 A 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 A 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 A 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 A 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 A 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 A 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 A 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 A 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 A 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 A 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 A 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 A 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 A 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 A 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 A 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 A 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 34 GLY PRO LEU GLY SER GLY SER TRP ASP CYS GLU VAL CYS SEQRES 2 B 34 LEU VAL GLN ASN LYS ALA ASP SER THR LYS CYS ILE ALA SEQRES 3 B 34 CYS GLU SER ALA LYS PRO GLY THR SEQRES 1 C 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 C 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 C 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 C 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 C 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 C 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 C 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 C 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 C 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 C 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 C 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 C 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 C 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 C 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 C 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 C 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 C 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 D 34 GLY PRO LEU GLY SER GLY SER TRP ASP CYS GLU VAL CYS SEQRES 2 D 34 LEU VAL GLN ASN LYS ALA ASP SER THR LYS CYS ILE ALA SEQRES 3 D 34 CYS GLU SER ALA LYS PRO GLY THR HET MG A 301 1 HET GDP A 302 28 HET ZN B 300 1 HET MG C 301 1 HET GDP C 302 28 HET ZN D 300 1 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 5 MG 2(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 ZN 2(ZN 2+) FORMUL 11 HOH *458(H2 O) HELIX 1 1 GLY A 22 LYS A 28 1 7 HELIX 2 2 HIS A 30 GLU A 36 1 7 HELIX 3 3 GLY A 68 GLY A 73 5 6 HELIX 4 4 ARG A 76 ILE A 81 1 6 HELIX 5 5 SER A 94 ASN A 100 1 7 HELIX 6 6 ASN A 100 GLU A 113 1 14 HELIX 7 7 LYS A 132 ILE A 136 5 5 HELIX 8 8 VAL A 137 ASN A 143 1 7 HELIX 9 9 GLU A 158 GLY A 170 1 13 HELIX 10 10 ASP A 190 THR A 207 1 18 HELIX 11 11 GLY C 22 LYS C 28 1 7 HELIX 12 12 HIS C 30 GLU C 36 1 7 HELIX 13 13 GLY C 68 GLY C 73 5 6 HELIX 14 14 ARG C 76 ILE C 81 1 6 HELIX 15 15 SER C 94 ASN C 100 1 7 HELIX 16 16 ASN C 100 GLU C 113 1 14 HELIX 17 17 LYS C 132 ILE C 136 5 5 HELIX 18 18 VAL C 137 ASN C 143 1 7 HELIX 19 19 PHE C 157 GLY C 170 1 14 HELIX 20 20 ASP C 190 THR C 207 1 18 SHEET 1 A 7 LYS A 38 VAL A 40 0 SHEET 2 A 7 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 A 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 A 7 VAL A 9 VAL A 16 1 N PHE A 11 O ASN A 62 SHEET 5 A 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 A 7 ILE A 117 ASN A 122 1 O ASN A 122 N PHE A 90 SHEET 7 A 7 GLN A 145 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 B 2 TRP B 850 ASP B 851 0 SHEET 2 B 2 GLN B 858 ASN B 859 -1 O ASN B 859 N TRP B 850 SHEET 1 C 7 LYS C 38 VAL C 40 0 SHEET 2 C 7 VAL C 45 THR C 54 -1 O VAL C 45 N VAL C 40 SHEET 3 C 7 GLY C 57 THR C 66 -1 O PHE C 61 N LEU C 50 SHEET 4 C 7 GLN C 10 VAL C 16 1 N PHE C 11 O ASN C 62 SHEET 5 C 7 CYS C 85 ASP C 91 1 O MET C 89 N VAL C 16 SHEET 6 C 7 ILE C 117 ASN C 122 1 O ASN C 122 N PHE C 90 SHEET 7 C 7 GLN C 145 ASP C 148 1 O GLN C 145 N LEU C 119 SHEET 1 D 2 TRP D 850 ASP D 851 0 SHEET 2 D 2 GLN D 858 ASN D 859 -1 O ASN D 859 N TRP D 850 LINK OG1 THR A 24 MG MG A 301 1555 1555 2.13 LINK MG MG A 301 O1B GDP A 302 1555 1555 2.15 LINK MG MG A 301 O HOH A 506 1555 1555 2.21 LINK MG MG A 301 O HOH A 507 1555 1555 2.24 LINK MG MG A 301 O HOH A 508 1555 1555 2.25 LINK MG MG A 301 O HOH A 509 1555 1555 2.27 LINK ZN ZN B 300 SG CYS B 852 1555 1555 2.48 LINK ZN ZN B 300 SG CYS B 855 1555 1555 2.24 LINK ZN ZN B 300 SG CYS B 866 1555 1555 2.39 LINK ZN ZN B 300 SG CYS B 869 1555 1555 2.38 LINK OG1 THR C 24 MG MG C 301 1555 1555 2.16 LINK MG MG C 301 O1B GDP C 302 1555 1555 2.13 LINK MG MG C 301 O HOH C 510 1555 1555 2.27 LINK MG MG C 301 O HOH C 511 1555 1555 2.20 LINK MG MG C 301 O HOH C 512 1555 1555 2.23 LINK MG MG C 301 O HOH C 513 1555 1555 2.22 LINK ZN ZN D 300 SG CYS D 852 1555 1555 2.44 LINK ZN ZN D 300 SG CYS D 855 1555 1555 2.32 LINK ZN ZN D 300 SG CYS D 866 1555 1555 2.41 LINK ZN ZN D 300 SG CYS D 869 1555 1555 2.38 SITE 1 AC1 6 THR A 24 GDP A 302 HOH A 506 HOH A 507 SITE 2 AC1 6 HOH A 508 HOH A 509 SITE 1 AC2 21 GLY A 20 THR A 21 GLY A 22 LYS A 23 SITE 2 AC2 21 THR A 24 THR A 25 ASN A 122 LYS A 123 SITE 3 AC2 21 ASP A 125 ILE A 126 SER A 150 ALA A 151 SITE 4 AC2 21 LYS A 152 HOH A 248 HOH A 266 MG A 301 SITE 5 AC2 21 HOH A 304 HOH A 372 HOH A 462 HOH A 507 SITE 6 AC2 21 HOH A 508 SITE 1 AC3 4 CYS B 852 CYS B 855 CYS B 866 CYS B 869 SITE 1 AC4 6 THR C 24 GDP C 302 HOH C 510 HOH C 511 SITE 2 AC4 6 HOH C 512 HOH C 513 SITE 1 AC5 22 GLY C 20 THR C 21 GLY C 22 LYS C 23 SITE 2 AC5 22 THR C 24 THR C 25 ASN C 122 LYS C 123 SITE 3 AC5 22 ASP C 125 ILE C 126 SER C 150 ALA C 151 SITE 4 AC5 22 LYS C 152 HOH C 233 HOH C 264 HOH C 275 SITE 5 AC5 22 MG C 301 HOH C 344 HOH C 382 HOH C 436 SITE 6 AC5 22 HOH C 511 HOH C 513 SITE 1 AC6 4 CYS D 852 CYS D 855 CYS D 866 CYS D 869 CRYST1 70.443 61.343 74.025 90.00 112.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014196 0.000000 0.005895 0.00000 SCALE2 0.000000 0.016302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014627 0.00000