HEADER BIOSYNTHETIC PROTEIN 08-MAR-09 3GJB TITLE CYTC3 WITH FE(II) AND ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTC3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 STRAIN: PSPHE02; SOURCE 5 GENE: CYTC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYTC3, HALOGENASE, BETA BARREL, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.WONG,C.L.DRENNAN REVDAT 4 21-FEB-24 3GJB 1 REMARK SHEET LINK REVDAT 3 01-NOV-17 3GJB 1 REMARK REVDAT 2 13-JUL-11 3GJB 1 VERSN REVDAT 1 14-APR-09 3GJB 0 JRNL AUTH C.WONG,D.G.FUJIMORI,C.T.WALSH,C.L.DRENNAN JRNL TITL STRUCTURAL ANALYSIS OF AN OPEN ACTIVE SITE CONFORMATION OF JRNL TITL 2 NONHEME IRON HALOGENASE CYTC3 JRNL REF J.AM.CHEM.SOC. V. 131 4872 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19281171 JRNL DOI 10.1021/JA8097355 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 49189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 4978 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.26300 REMARK 3 B22 (A**2) : -10.26300 REMARK 3 B33 (A**2) : 20.52500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.286 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.113 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.055 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.949 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 62.81 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : FE_CYTC3_REPCLD.PAR REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE- ROOT REMARK 200 I-BEAM SINGLE CRYSTAL REMARK 200 OPTICS : INTER-IMAGE DEAD TIME 5S REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M SODIUM ACETATE TRIHYDRATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.22100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.49400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.49400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.33150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.49400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.49400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.11050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.49400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.49400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 186.33150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.49400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.49400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.11050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 124.22100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -124.22100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 138 REMARK 465 GLY A 139 REMARK 465 HIS A 170 REMARK 465 THR A 171 REMARK 465 SER A 172 REMARK 465 MET A 173 REMARK 465 GLU A 177 REMARK 465 SER A 178 REMARK 465 LYS A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 ASP A 182 REMARK 465 TYR A 183 REMARK 465 ASP A 184 REMARK 465 ALA A 185 REMARK 465 ASP A 186 REMARK 465 ALA A 187 REMARK 465 ILE A 188 REMARK 465 ASN A 189 REMARK 465 GLN A 190 REMARK 465 ARG A 191 REMARK 465 GLU A 192 REMARK 465 LYS A 193 REMARK 465 ASP A 194 REMARK 465 GLY A 195 REMARK 465 ILE A 196 REMARK 465 LYS A 197 REMARK 465 ARG A 198 REMARK 465 GLY A 199 REMARK 465 PHE A 200 REMARK 465 PHE A 201 REMARK 465 GLY A 202 REMARK 465 TYR A 203 REMARK 465 ASP A 204 REMARK 465 TYR A 205 REMARK 465 ARG A 206 REMARK 465 SER A 207 REMARK 465 LEU A 208 REMARK 465 GLN A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 PRO A 212 REMARK 465 ASP A 213 REMARK 465 TRP A 214 REMARK 465 LYS A 215 REMARK 465 PRO A 216 REMARK 465 ASP A 217 REMARK 465 GLU A 218 REMARK 465 SER A 219 REMARK 465 GLN A 220 REMARK 465 PRO A 318 REMARK 465 SER A 319 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 GLU B 138 REMARK 465 GLY B 139 REMARK 465 SER B 178 REMARK 465 LYS B 179 REMARK 465 GLY B 180 REMARK 465 MET B 181 REMARK 465 ASP B 182 REMARK 465 TYR B 183 REMARK 465 ASP B 184 REMARK 465 ALA B 185 REMARK 465 ASP B 186 REMARK 465 ALA B 187 REMARK 465 ILE B 188 REMARK 465 ASN B 189 REMARK 465 GLN B 190 REMARK 465 ARG B 191 REMARK 465 GLU B 192 REMARK 465 LYS B 193 REMARK 465 ASP B 194 REMARK 465 GLY B 195 REMARK 465 ILE B 196 REMARK 465 LYS B 197 REMARK 465 ARG B 198 REMARK 465 GLY B 199 REMARK 465 PHE B 200 REMARK 465 PHE B 201 REMARK 465 GLY B 202 REMARK 465 TYR B 203 REMARK 465 ASP B 204 REMARK 465 TYR B 205 REMARK 465 ARG B 206 REMARK 465 SER B 207 REMARK 465 LEU B 208 REMARK 465 GLN B 209 REMARK 465 LYS B 210 REMARK 465 ASP B 211 REMARK 465 PRO B 212 REMARK 465 ASP B 213 REMARK 465 TRP B 214 REMARK 465 LYS B 215 REMARK 465 PRO B 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 140 CB CG CD NE CZ NH1 NH2 REMARK 470 TYR A 222 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ASN A 273 CG OD1 ND2 REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 240 O2 AKG A 321 1.97 REMARK 500 FE FE2 A 320 C1 AKG A 321 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 -21.39 -141.23 REMARK 500 THR A 275 -60.78 -132.57 REMARK 500 ASN B 9 112.08 41.81 REMARK 500 ASP B 73 -16.64 -143.82 REMARK 500 ASN B 97 77.61 -103.13 REMARK 500 ILE B 144 24.55 -141.23 REMARK 500 ASN B 273 38.05 72.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 320 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 118 NE2 REMARK 620 2 HIS A 240 NE2 83.1 REMARK 620 3 AKG A 321 O2 133.7 57.6 REMARK 620 4 AKG A 321 O5 100.5 90.8 103.1 REMARK 620 5 HOH A 400 O 90.1 169.8 131.7 83.0 REMARK 620 6 HOH A 402 O 95.5 91.6 65.3 164.0 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 320 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 118 NE2 REMARK 620 2 HIS B 240 NE2 84.7 REMARK 620 3 HOH B 410 O 87.3 96.6 REMARK 620 4 HOH B 411 O 95.0 174.5 77.9 REMARK 620 5 HOH B 412 O 170.8 89.6 86.2 89.9 REMARK 620 6 HOH B 413 O 97.6 90.1 172.0 95.4 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 327 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GJA RELATED DB: PDB REMARK 900 CYTC3 DBREF 3GJB A 1 319 PDB 3GJB 3GJB 1 319 DBREF 3GJB B 1 319 PDB 3GJB 3GJB 1 319 SEQRES 1 A 319 MET THR THR VAL SER GLU GLN ALA ASN PHE THR PHE SER SEQRES 2 A 319 PRO GLU GLU VAL ALA ARG PHE GLU ARG ASP GLY TYR ILE SEQRES 3 A 319 GLY PRO VAL LYS ILE PHE GLU PRO GLU GLU MET THR ARG SEQRES 4 A 319 ARG TRP ASN ILE ILE ARG ARG GLN LEU LEU ASP ARG SER SEQRES 5 A 319 LEU ALA ILE TYR PRO ASP SER ASN GLY LYS ALA ASN ILE SEQRES 6 A 319 SER ASN TYR ASP ARG HIS LEU ASP ILE ASP LEU LEU ALA SEQRES 7 A 319 GLU HIS ILE MET ARG PRO GLU ILE VAL ASP ARG VAL GLY SEQRES 8 A 319 SER LEU ILE GLY ARG ASN LEU LEU CYS TRP ARG SER GLU SEQRES 9 A 319 PHE PHE PRO LYS TYR GLN GLY ASP GLU GLY THR ASP TRP SEQRES 10 A 319 HIS GLN ALA ALA THR PHE ALA HIS ALA THR GLY LYS PRO SEQRES 11 A 319 GLN ILE ILE TRP PRO SER ASP GLU GLY ARG PRO ALA PHE SEQRES 12 A 319 ILE GLY THR ILE THR VAL TRP THR ALA PHE THR HIS SER SEQRES 13 A 319 THR GLU GLN ASN GLY CYS LEU GLN LEU MET PRO GLY THR SEQRES 14 A 319 HIS THR SER MET ASN TYR ASP GLU SER LYS GLY MET ASP SEQRES 15 A 319 TYR ASP ALA ASP ALA ILE ASN GLN ARG GLU LYS ASP GLY SEQRES 16 A 319 ILE LYS ARG GLY PHE PHE GLY TYR ASP TYR ARG SER LEU SEQRES 17 A 319 GLN LYS ASP PRO ASP TRP LYS PRO ASP GLU SER GLN ALA SEQRES 18 A 319 TYR PRO MET VAL LEU LYS PRO GLY GLU ALA VAL ILE PHE SEQRES 19 A 319 TRP SER ASN THR MET HIS ALA SER LEU PRO HIS THR GLY SEQRES 20 A 319 SER LYS THR ASP TYR ARG MET GLY PHE ALA ALA ARG TYR SEQRES 21 A 319 VAL PRO THR GLN VAL GLN VAL TYR PRO GLY THR GLU ASN SEQRES 22 A 319 LEU THR GLU TYR GLY ASP GLY ILE ASN LEU GLU LYS TYR SEQRES 23 A 319 GLY ALA VAL LEU THR SER GLY VAL ASP GLU TYR GLY HIS SEQRES 24 A 319 ASN ARG ILE ALA ARG THR SER GLN ARG GLY TYR GLU PHE SEQRES 25 A 319 VAL PRO ARG GLN ILE PRO SER SEQRES 1 B 319 MET THR THR VAL SER GLU GLN ALA ASN PHE THR PHE SER SEQRES 2 B 319 PRO GLU GLU VAL ALA ARG PHE GLU ARG ASP GLY TYR ILE SEQRES 3 B 319 GLY PRO VAL LYS ILE PHE GLU PRO GLU GLU MET THR ARG SEQRES 4 B 319 ARG TRP ASN ILE ILE ARG ARG GLN LEU LEU ASP ARG SER SEQRES 5 B 319 LEU ALA ILE TYR PRO ASP SER ASN GLY LYS ALA ASN ILE SEQRES 6 B 319 SER ASN TYR ASP ARG HIS LEU ASP ILE ASP LEU LEU ALA SEQRES 7 B 319 GLU HIS ILE MET ARG PRO GLU ILE VAL ASP ARG VAL GLY SEQRES 8 B 319 SER LEU ILE GLY ARG ASN LEU LEU CYS TRP ARG SER GLU SEQRES 9 B 319 PHE PHE PRO LYS TYR GLN GLY ASP GLU GLY THR ASP TRP SEQRES 10 B 319 HIS GLN ALA ALA THR PHE ALA HIS ALA THR GLY LYS PRO SEQRES 11 B 319 GLN ILE ILE TRP PRO SER ASP GLU GLY ARG PRO ALA PHE SEQRES 12 B 319 ILE GLY THR ILE THR VAL TRP THR ALA PHE THR HIS SER SEQRES 13 B 319 THR GLU GLN ASN GLY CYS LEU GLN LEU MET PRO GLY THR SEQRES 14 B 319 HIS THR SER MET ASN TYR ASP GLU SER LYS GLY MET ASP SEQRES 15 B 319 TYR ASP ALA ASP ALA ILE ASN GLN ARG GLU LYS ASP GLY SEQRES 16 B 319 ILE LYS ARG GLY PHE PHE GLY TYR ASP TYR ARG SER LEU SEQRES 17 B 319 GLN LYS ASP PRO ASP TRP LYS PRO ASP GLU SER GLN ALA SEQRES 18 B 319 TYR PRO MET VAL LEU LYS PRO GLY GLU ALA VAL ILE PHE SEQRES 19 B 319 TRP SER ASN THR MET HIS ALA SER LEU PRO HIS THR GLY SEQRES 20 B 319 SER LYS THR ASP TYR ARG MET GLY PHE ALA ALA ARG TYR SEQRES 21 B 319 VAL PRO THR GLN VAL GLN VAL TYR PRO GLY THR GLU ASN SEQRES 22 B 319 LEU THR GLU TYR GLY ASP GLY ILE ASN LEU GLU LYS TYR SEQRES 23 B 319 GLY ALA VAL LEU THR SER GLY VAL ASP GLU TYR GLY HIS SEQRES 24 B 319 ASN ARG ILE ALA ARG THR SER GLN ARG GLY TYR GLU PHE SEQRES 25 B 319 VAL PRO ARG GLN ILE PRO SER HET FE2 A 320 1 HET AKG A 321 10 HET AKG A 322 10 HET ACT A 323 4 HET ACT A 324 4 HET ACT A 325 4 HET SO4 A 326 5 HET FE2 B 320 1 HET AKG B 321 10 HET ACT B 322 4 HET ACT B 323 4 HET ACT B 324 4 HET ACT B 325 4 HET ACT B 326 4 HET SO4 B 327 5 HETNAM FE2 FE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION FORMUL 3 FE2 2(FE 2+) FORMUL 4 AKG 3(C5 H6 O5) FORMUL 6 ACT 8(C2 H3 O2 1-) FORMUL 9 SO4 2(O4 S 2-) FORMUL 18 HOH *217(H2 O) HELIX 1 1 SER A 13 GLY A 24 1 12 HELIX 2 2 GLU A 33 LEU A 49 1 17 HELIX 3 3 GLY A 61 SER A 66 1 6 HELIX 4 4 ASP A 69 ASP A 73 5 5 HELIX 5 5 ILE A 74 ARG A 83 1 10 HELIX 6 6 ARG A 83 GLY A 95 1 13 HELIX 7 7 GLU A 284 TYR A 286 5 3 HELIX 8 8 SER B 13 GLY B 24 1 12 HELIX 9 9 GLU B 33 LEU B 49 1 17 HELIX 10 10 GLY B 61 SER B 66 1 6 HELIX 11 11 ASP B 69 ASP B 73 5 5 HELIX 12 12 ILE B 74 MET B 82 1 9 HELIX 13 13 ARG B 83 GLY B 95 1 13 HELIX 14 14 GLU B 284 TYR B 286 5 3 SHEET 1 A 6 TYR A 25 LYS A 30 0 SHEET 2 A 6 GLU A 230 TRP A 235 -1 O ILE A 233 N ILE A 26 SHEET 3 A 6 ILE A 147 ALA A 152 -1 N THR A 148 O PHE A 234 SHEET 4 A 6 ARG A 253 PRO A 262 -1 O TYR A 260 N ILE A 147 SHEET 5 A 6 LEU A 98 LYS A 108 -1 N ARG A 102 O ARG A 259 SHEET 6 A 6 VAL A 289 SER A 292 -1 O THR A 291 N LEU A 98 SHEET 1 B 6 LEU A 163 LEU A 165 0 SHEET 2 B 6 HIS A 240 SER A 242 -1 O ALA A 241 N GLN A 164 SHEET 3 B 6 THR A 115 ALA A 120 -1 N HIS A 118 O HIS A 240 SHEET 4 B 6 THR B 115 ALA B 120 -1 O GLN B 119 N GLN A 119 SHEET 5 B 6 HIS B 240 SER B 242 -1 O HIS B 240 N HIS B 118 SHEET 6 B 6 LEU B 163 LEU B 165 -1 N GLN B 164 O ALA B 241 SHEET 1 C 2 ILE A 132 ILE A 133 0 SHEET 2 C 2 GLN A 266 VAL A 267 -1 O GLN A 266 N ILE A 133 SHEET 1 D 2 ALA A 142 PHE A 143 0 SHEET 2 D 2 ASN B 174 TYR B 175 -1 O TYR B 175 N ALA A 142 SHEET 1 E 2 GLU A 276 GLY A 278 0 SHEET 2 E 2 ILE A 281 ASN A 282 -1 O ILE A 281 N TYR A 277 SHEET 1 F 6 TYR B 25 LYS B 30 0 SHEET 2 F 6 GLU B 230 TRP B 235 -1 O ILE B 233 N ILE B 26 SHEET 3 F 6 ILE B 147 ALA B 152 -1 N THR B 148 O PHE B 234 SHEET 4 F 6 ARG B 253 PRO B 262 -1 O PHE B 256 N THR B 151 SHEET 5 F 6 LEU B 98 LYS B 108 -1 N ARG B 102 O ARG B 259 SHEET 6 F 6 VAL B 289 LEU B 290 -1 O VAL B 289 N CYS B 100 SHEET 1 G 2 ILE B 132 ILE B 133 0 SHEET 2 G 2 GLN B 266 VAL B 267 -1 O GLN B 266 N ILE B 133 SHEET 1 H 2 GLU B 276 GLY B 278 0 SHEET 2 H 2 ILE B 281 ASN B 282 -1 O ILE B 281 N TYR B 277 LINK NE2 HIS A 118 FE FE2 A 320 1555 1555 2.18 LINK NE2 HIS A 240 FE FE2 A 320 1555 1555 2.25 LINK FE FE2 A 320 O2 AKG A 321 1555 1555 1.73 LINK FE FE2 A 320 O5 AKG A 321 1555 1555 1.87 LINK FE FE2 A 320 O HOH A 400 1555 1555 2.28 LINK FE FE2 A 320 O HOH A 402 1555 1555 2.32 LINK NE2 HIS B 118 FE FE2 B 320 1555 1555 2.17 LINK NE2 HIS B 240 FE FE2 B 320 1555 1555 2.17 LINK FE FE2 B 320 O HOH B 410 1555 1555 2.16 LINK FE FE2 B 320 O HOH B 411 1555 1555 2.26 LINK FE FE2 B 320 O HOH B 412 1555 1555 2.16 LINK FE FE2 B 320 O HOH B 413 1555 1555 2.35 CISPEP 1 GLY A 27 PRO A 28 0 -0.06 CISPEP 2 GLY B 27 PRO B 28 0 0.01 SITE 1 AC1 5 HIS A 118 HIS A 240 AKG A 321 HOH A 400 SITE 2 AC1 5 HOH A 402 SITE 1 AC2 11 LYS A 108 THR A 115 HIS A 118 HIS A 240 SITE 2 AC2 11 SER A 242 ARG A 253 FE2 A 320 ACT A 325 SITE 3 AC2 11 HOH A 335 HOH A 400 HOH A 402 SITE 1 AC3 12 LYS A 62 ARG A 102 ALA A 121 THR A 122 SITE 2 AC3 12 PHE A 123 ALA A 124 HIS A 125 GLN A 131 SITE 3 AC3 12 ARG A 259 ASP A 279 ASP B 116 SO4 B 327 SITE 1 AC4 1 HIS A 299 SITE 1 AC5 6 LYS A 62 HIS A 125 GLY B 114 THR B 115 SITE 2 AC5 6 ASP B 116 SO4 B 327 SITE 1 AC6 5 ALA A 120 SER A 236 ARG A 259 AKG A 321 SITE 2 AC6 5 SO4 B 327 SITE 1 AC7 9 ASP A 116 HOH A 347 LYS B 62 TYR B 68 SITE 2 AC7 9 GLU B 104 ARG B 259 AKG B 321 ACT B 323 SITE 3 AC7 9 ACT B 325 SITE 1 AC8 6 HIS B 118 HIS B 240 HOH B 410 HOH B 411 SITE 2 AC8 6 HOH B 412 HOH B 413 SITE 1 AC9 12 ASP A 116 SO4 A 326 LYS B 62 ARG B 102 SITE 2 AC9 12 ALA B 121 THR B 122 PHE B 123 ALA B 124 SITE 3 AC9 12 HIS B 125 GLN B 131 ARG B 259 ASP B 279 SITE 1 BC1 5 LYS B 108 GLY B 161 SER B 242 ARG B 253 SITE 2 BC1 5 HOH B 413 SITE 1 BC2 4 ASP A 116 SO4 A 326 LYS B 62 HIS B 125 SITE 1 BC3 3 GLN B 266 HIS B 299 HOH B 427 SITE 1 BC4 4 SO4 A 326 SER B 236 ARG B 259 HOH B 412 SITE 1 BC5 2 HIS B 155 THR B 157 SITE 1 BC6 8 LYS A 62 TYR A 68 GLU A 104 AKG A 322 SITE 2 BC6 8 ACT A 324 ACT A 325 ASP B 116 HOH B 430 CRYST1 88.988 88.988 248.442 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004025 0.00000