data_3GK2 # _entry.id 3GK2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GK2 pdb_00003gk2 10.2210/pdb3gk2/pdb RCSB RCSB051958 ? ? WWPDB D_1000051958 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MHO 'THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN' unspecified PDB 3CR2 'X-ray structure of bovine Zn(2+),Ca(2+)-S100B' unspecified PDB 3CR4 'X-ray structure of bovine Pnt,Ca(2+)-S100B' unspecified PDB 3CR5 'X-ray structure of bovine Pnt-Zn(2+),Ca(2+)-S100B' unspecified PDB 1DT7 'SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB)' unspecified PDB 3GK1 . unspecified PDB 3GK4 . unspecified # _pdbx_database_status.entry_id 3GK2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Charpentier, T.H.' 1 ? 'Weber, D.J.' 2 ? 'Toth, E.A.' 3 ? # _citation.id primary _citation.title ;Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 6202 _citation.page_last 6212 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19469484 _citation.pdbx_database_id_DOI 10.1021/bi9005754 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Charpentier, T.H.' 1 ? primary 'Wilder, P.T.' 2 ? primary 'Liriano, M.A.' 3 ? primary 'Varney, K.M.' 4 ? primary 'Zhong, S.' 5 ? primary 'Coop, A.' 6 ? primary 'Pozharski, E.' 7 ? primary 'MacKerell, A.D.' 8 ? primary 'Toth, E.A.' 9 ? primary 'Weber, D.J.' 10 ? # _cell.length_a 34.224 _cell.length_b 91.158 _cell.length_c 58.649 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GK2 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3GK2 _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein S100-B' 10681.974 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn '(Z)-2-[2-(4-methylpiperazin-1-yl)benzyl]diazenecarbothioamide' 277.388 1 ? ? ? ? 4 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 5 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S100 calcium-binding protein B, S-100 protein subunit beta, S-100 protein beta chain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM ITTACHEFFEHE ; _entity_poly.pdbx_seq_one_letter_code_can ;MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM ITTACHEFFEHE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLU n 1 4 LEU n 1 5 GLU n 1 6 LYS n 1 7 ALA n 1 8 VAL n 1 9 VAL n 1 10 ALA n 1 11 LEU n 1 12 ILE n 1 13 ASP n 1 14 VAL n 1 15 PHE n 1 16 HIS n 1 17 GLN n 1 18 TYR n 1 19 SER n 1 20 GLY n 1 21 ARG n 1 22 GLU n 1 23 GLY n 1 24 ASP n 1 25 LYS n 1 26 HIS n 1 27 LYS n 1 28 LEU n 1 29 LYS n 1 30 LYS n 1 31 SER n 1 32 GLU n 1 33 LEU n 1 34 LYS n 1 35 GLU n 1 36 LEU n 1 37 ILE n 1 38 ASN n 1 39 ASN n 1 40 GLU n 1 41 LEU n 1 42 SER n 1 43 HIS n 1 44 PHE n 1 45 LEU n 1 46 GLU n 1 47 GLU n 1 48 ILE n 1 49 LYS n 1 50 GLU n 1 51 GLN n 1 52 GLU n 1 53 VAL n 1 54 VAL n 1 55 ASP n 1 56 LYS n 1 57 VAL n 1 58 MET n 1 59 GLU n 1 60 THR n 1 61 LEU n 1 62 ASP n 1 63 SER n 1 64 ASP n 1 65 GLY n 1 66 ASP n 1 67 GLY n 1 68 GLU n 1 69 CYS n 1 70 ASP n 1 71 PHE n 1 72 GLN n 1 73 GLU n 1 74 PHE n 1 75 MET n 1 76 ALA n 1 77 PHE n 1 78 VAL n 1 79 ALA n 1 80 MET n 1 81 ILE n 1 82 THR n 1 83 THR n 1 84 ALA n 1 85 CYS n 1 86 HIS n 1 87 GLU n 1 88 PHE n 1 89 PHE n 1 90 GLU n 1 91 HIS n 1 92 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'bovine,cow,domestic cattle,domestic cow' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene S100B _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code S100B_BOVIN _struct_ref.pdbx_db_accession P02638 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM ITTACHEFFEHE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GK2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 92 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02638 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 92 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 27A non-polymer . '(Z)-2-[2-(4-methylpiperazin-1-yl)benzyl]diazenecarbothioamide' ? 'C13 H19 N5 S' 277.388 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GK2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pdbx_details '28% PEG3350, 7.5mM CaCl2, 100mM Cacodylate buffer, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2007-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength_list 0.97 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 # _reflns.entry_id 3GK2 _reflns.d_resolution_high 1.984 _reflns.d_resolution_low 45.600 _reflns.number_obs 6299 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 27.849 _reflns.pdbx_chi_squared 1.101 _reflns.pdbx_redundancy 6.300 _reflns.percent_possible_obs 95.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.984 2.07 ? ? ? 0.233 ? ? 1.011 3.80 ? 487 77.20 1 1 2.07 2.15 ? ? ? 0.244 ? ? 1.245 4.70 ? 610 91.90 2 1 2.15 2.25 ? ? ? 0.142 ? ? 1.163 5.70 ? 611 97.30 3 1 2.25 2.37 ? ? ? 0.155 ? ? 1.163 6.50 ? 648 99.50 4 1 2.37 2.52 ? ? ? 0.094 ? ? 1.088 6.90 ? 657 100.00 5 1 2.52 2.71 ? ? ? 0.073 ? ? 1.118 7.10 ? 656 100.00 6 1 2.71 2.99 ? ? ? 0.061 ? ? 1.042 7.10 ? 650 100.00 7 1 2.99 3.42 ? ? ? 0.060 ? ? 1.064 7.00 ? 665 100.00 8 1 3.42 4.31 ? ? ? 0.047 ? ? 1.073 6.90 ? 678 99.70 9 1 4.31 45.00 ? ? ? 0.032 ? ? 1.068 6.40 ? 637 88.30 10 1 # _refine.entry_id 3GK2 _refine.ls_d_res_high 1.984 _refine.ls_d_res_low 45.600 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 94.210 _refine.ls_number_reflns_obs 6284 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_R_work 0.227 _refine.ls_wR_factor_R_work 0.271 _refine.ls_R_factor_R_free 0.281 _refine.ls_wR_factor_R_free 0.303 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 291 _refine.ls_number_reflns_R_work 5993 _refine.B_iso_mean 50.578 _refine.aniso_B[1][1] 2.540 _refine.aniso_B[2][2] -2.170 _refine.aniso_B[3][3] -0.370 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.overall_SU_R_Cruickshank_DPI 0.249 _refine.overall_SU_R_free 0.207 _refine.pdbx_overall_ESU_R 0.239 _refine.pdbx_overall_ESU_R_Free 0.207 _refine.overall_SU_ML 0.176 _refine.overall_SU_B 15.929 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.740 _refine.B_iso_max 100.74 _refine.B_iso_min 41.15 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_starting_model 'PDB ENTRY 1MHO' _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 710 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 769 _refine_hist.d_res_high 1.984 _refine_hist.d_res_low 45.600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 745 0.006 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 997 1.525 1.986 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 87 3.813 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39 34.278 26.410 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 140 12.547 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 1 10.855 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 107 0.058 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 561 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 305 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 509 0.293 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 29 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 7 0.092 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 41 0.195 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.070 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 450 0.100 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 698 0.159 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 326 0.316 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 299 0.518 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.984 _refine_ls_shell.d_res_low 2.035 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 59.880 _refine_ls_shell.number_reflns_R_work 285 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.321 _refine_ls_shell.R_factor_R_free 0.486 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 294 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3GK2 _struct.title 'X-ray structure of bovine SBi279,Ca(2+)-S100B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GK2 _struct_keywords.text 'EF hand, Alpha helical, Metal-binding, Nucleus, METAL BINDING PROTEIN' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLY A 20 ? SER A 1 GLY A 19 1 ? 19 HELX_P HELX_P2 2 LYS A 29 ? LEU A 41 ? LYS A 28 LEU A 40 1 ? 13 HELX_P HELX_P3 3 GLU A 50 ? ASP A 62 ? GLU A 49 ASP A 61 1 ? 13 HELX_P HELX_P4 4 ASP A 70 ? PHE A 89 ? ASP A 69 PHE A 88 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 19 O ? ? ? 1_555 B CA . CA ? ? A SER 18 A CA 92 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc2 metalc ? ? A GLU 22 O ? ? ? 1_555 B CA . CA ? ? A GLU 21 A CA 92 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc3 metalc ? ? A ASP 24 O ? ? ? 1_555 B CA . CA ? ? A ASP 23 A CA 92 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc4 metalc ? ? A LYS 27 O ? ? ? 1_555 B CA . CA ? ? A LYS 26 A CA 92 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc5 metalc ? ? A GLU 32 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 31 A CA 92 1_555 ? ? ? ? ? ? ? 2.555 ? ? metalc6 metalc ? ? A GLU 32 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 31 A CA 92 1_555 ? ? ? ? ? ? ? 2.989 ? ? metalc7 metalc ? ? A ASP 62 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 61 A CA 93 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc8 metalc ? ? A ASP 64 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 63 A CA 93 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc9 metalc ? ? A ASP 66 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 65 A CA 93 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc10 metalc ? ? A GLU 68 O ? ? ? 1_555 C CA . CA ? ? A GLU 67 A CA 93 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc11 metalc ? ? A GLU 73 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 72 A CA 93 1_555 ? ? ? ? ? ? ? 2.554 ? ? metalc12 metalc ? ? A GLU 73 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 72 A CA 93 1_555 ? ? ? ? ? ? ? 2.766 ? ? metalc13 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 92 A HOH 121 1_555 ? ? ? ? ? ? ? 2.331 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 92 ? 6 'BINDING SITE FOR RESIDUE CA A 92' AC2 Software A CA 93 ? 5 'BINDING SITE FOR RESIDUE CA A 93' AC3 Software A 27A 94 ? 3 'BINDING SITE FOR RESIDUE 27A A 94' AC4 Software A CAC 95 ? 8 'BINDING SITE FOR RESIDUE CAC A 95' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 19 ? SER A 18 . ? 1_555 ? 2 AC1 6 GLU A 22 ? GLU A 21 . ? 1_555 ? 3 AC1 6 ASP A 24 ? ASP A 23 . ? 1_555 ? 4 AC1 6 LYS A 27 ? LYS A 26 . ? 1_555 ? 5 AC1 6 GLU A 32 ? GLU A 31 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 121 . ? 1_555 ? 7 AC2 5 ASP A 62 ? ASP A 61 . ? 1_555 ? 8 AC2 5 ASP A 64 ? ASP A 63 . ? 1_555 ? 9 AC2 5 ASP A 66 ? ASP A 65 . ? 1_555 ? 10 AC2 5 GLU A 68 ? GLU A 67 . ? 1_555 ? 11 AC2 5 GLU A 73 ? GLU A 72 . ? 1_555 ? 12 AC3 3 HIS A 43 ? HIS A 42 . ? 3_555 ? 13 AC3 3 HIS A 43 ? HIS A 42 . ? 1_555 ? 14 AC3 3 PHE A 44 ? PHE A 43 . ? 1_555 ? 15 AC4 8 GLY A 20 ? GLY A 19 . ? 3_554 ? 16 AC4 8 GLY A 20 ? GLY A 19 . ? 1_555 ? 17 AC4 8 ARG A 21 ? ARG A 20 . ? 1_555 ? 18 AC4 8 ARG A 21 ? ARG A 20 . ? 3_554 ? 19 AC4 8 LYS A 25 ? LYS A 24 . ? 1_555 ? 20 AC4 8 LYS A 25 ? LYS A 24 . ? 3_554 ? 21 AC4 8 GLU A 52 ? GLU A 51 . ? 6_554 ? 22 AC4 8 GLU A 52 ? GLU A 51 . ? 8_455 ? # _atom_sites.entry_id 3GK2 _atom_sites.fract_transf_matrix[1][1] 0.029219 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010970 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017051 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 TYR 18 17 17 TYR TYR A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 HIS 26 25 25 HIS HIS A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 HIS 43 42 42 HIS HIS A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 MET 58 57 57 MET MET A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 SER 63 62 62 SER SER A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 CYS 69 68 68 CYS CYS A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 GLN 72 71 71 GLN GLN A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 PHE 74 73 73 PHE PHE A . n A 1 75 MET 75 74 74 MET MET A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 MET 80 79 79 MET MET A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 CYS 85 84 84 CYS CYS A . n A 1 86 HIS 86 85 85 HIS HIS A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 GLU 90 89 ? ? ? A . n A 1 91 HIS 91 90 ? ? ? A . n A 1 92 GLU 92 91 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 92 90 CA CA A . C 2 CA 1 93 91 CA CA A . D 3 27A 1 94 1 27A 27A A . E 4 CAC 1 95 1 CAC CAC A . F 5 HOH 1 96 1 HOH HOH A . F 5 HOH 2 97 2 HOH HOH A . F 5 HOH 3 98 3 HOH HOH A . F 5 HOH 4 99 4 HOH HOH A . F 5 HOH 5 100 5 HOH HOH A . F 5 HOH 6 101 6 HOH HOH A . F 5 HOH 7 102 7 HOH HOH A . F 5 HOH 8 103 8 HOH HOH A . F 5 HOH 9 104 9 HOH HOH A . F 5 HOH 10 105 10 HOH HOH A . F 5 HOH 11 106 11 HOH HOH A . F 5 HOH 12 107 12 HOH HOH A . F 5 HOH 13 108 13 HOH HOH A . F 5 HOH 14 109 14 HOH HOH A . F 5 HOH 15 110 15 HOH HOH A . F 5 HOH 16 111 16 HOH HOH A . F 5 HOH 17 112 17 HOH HOH A . F 5 HOH 18 113 18 HOH HOH A . F 5 HOH 19 114 19 HOH HOH A . F 5 HOH 20 115 20 HOH HOH A . F 5 HOH 21 116 21 HOH HOH A . F 5 HOH 22 117 22 HOH HOH A . F 5 HOH 23 118 23 HOH HOH A . F 5 HOH 24 119 24 HOH HOH A . F 5 HOH 25 120 25 HOH HOH A . F 5 HOH 26 121 26 HOH HOH A . F 5 HOH 27 122 27 HOH HOH A . F 5 HOH 28 123 28 HOH HOH A . F 5 HOH 29 124 29 HOH HOH A . F 5 HOH 30 125 30 HOH HOH A . F 5 HOH 31 126 31 HOH HOH A . F 5 HOH 32 127 32 HOH HOH A . F 5 HOH 33 128 33 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2940 ? 1 MORE -79 ? 1 'SSA (A^2)' 10280 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id 27A _pdbx_struct_special_symmetry.auth_seq_id 94 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id 27A _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 19 ? A SER 18 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? A GLU 22 ? A GLU 21 ? 1_555 100.1 ? 2 O ? A SER 19 ? A SER 18 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? A ASP 24 ? A ASP 23 ? 1_555 77.9 ? 3 O ? A GLU 22 ? A GLU 21 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? A ASP 24 ? A ASP 23 ? 1_555 89.2 ? 4 O ? A SER 19 ? A SER 18 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? A LYS 27 ? A LYS 26 ? 1_555 85.3 ? 5 O ? A GLU 22 ? A GLU 21 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? A LYS 27 ? A LYS 26 ? 1_555 168.2 ? 6 O ? A ASP 24 ? A ASP 23 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? A LYS 27 ? A LYS 26 ? 1_555 81.6 ? 7 O ? A SER 19 ? A SER 18 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE1 ? A GLU 32 ? A GLU 31 ? 1_555 92.9 ? 8 O ? A GLU 22 ? A GLU 21 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE1 ? A GLU 32 ? A GLU 31 ? 1_555 108.6 ? 9 O ? A ASP 24 ? A ASP 23 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE1 ? A GLU 32 ? A GLU 31 ? 1_555 161.2 ? 10 O ? A LYS 27 ? A LYS 26 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE1 ? A GLU 32 ? A GLU 31 ? 1_555 81.3 ? 11 O ? A SER 19 ? A SER 18 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE2 ? A GLU 32 ? A GLU 31 ? 1_555 74.4 ? 12 O ? A GLU 22 ? A GLU 21 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE2 ? A GLU 32 ? A GLU 31 ? 1_555 71.3 ? 13 O ? A ASP 24 ? A ASP 23 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE2 ? A GLU 32 ? A GLU 31 ? 1_555 142.4 ? 14 O ? A LYS 27 ? A LYS 26 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE2 ? A GLU 32 ? A GLU 31 ? 1_555 120.4 ? 15 OE1 ? A GLU 32 ? A GLU 31 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 OE2 ? A GLU 32 ? A GLU 31 ? 1_555 45.7 ? 16 O ? A SER 19 ? A SER 18 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? F HOH . ? A HOH 121 ? 1_555 177.2 ? 17 O ? A GLU 22 ? A GLU 21 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? F HOH . ? A HOH 121 ? 1_555 80.5 ? 18 O ? A ASP 24 ? A ASP 23 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? F HOH . ? A HOH 121 ? 1_555 99.4 ? 19 O ? A LYS 27 ? A LYS 26 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? F HOH . ? A HOH 121 ? 1_555 93.7 ? 20 OE1 ? A GLU 32 ? A GLU 31 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? F HOH . ? A HOH 121 ? 1_555 89.6 ? 21 OE2 ? A GLU 32 ? A GLU 31 ? 1_555 CA ? B CA . ? A CA 92 ? 1_555 O ? F HOH . ? A HOH 121 ? 1_555 108.3 ? 22 OD1 ? A ASP 62 ? A ASP 61 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OD1 ? A ASP 64 ? A ASP 63 ? 1_555 83.5 ? 23 OD1 ? A ASP 62 ? A ASP 61 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 86.8 ? 24 OD1 ? A ASP 64 ? A ASP 63 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 83.6 ? 25 OD1 ? A ASP 62 ? A ASP 61 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 O ? A GLU 68 ? A GLU 67 ? 1_555 86.8 ? 26 OD1 ? A ASP 64 ? A ASP 63 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 O ? A GLU 68 ? A GLU 67 ? 1_555 164.9 ? 27 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 O ? A GLU 68 ? A GLU 67 ? 1_555 84.3 ? 28 OD1 ? A ASP 62 ? A ASP 61 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE1 ? A GLU 73 ? A GLU 72 ? 1_555 114.3 ? 29 OD1 ? A ASP 64 ? A ASP 63 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE1 ? A GLU 73 ? A GLU 72 ? 1_555 114.2 ? 30 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE1 ? A GLU 73 ? A GLU 72 ? 1_555 153.0 ? 31 O ? A GLU 68 ? A GLU 67 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE1 ? A GLU 73 ? A GLU 72 ? 1_555 80.5 ? 32 OD1 ? A ASP 62 ? A ASP 61 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE2 ? A GLU 73 ? A GLU 72 ? 1_555 88.4 ? 33 OD1 ? A ASP 64 ? A ASP 63 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE2 ? A GLU 73 ? A GLU 72 ? 1_555 71.4 ? 34 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE2 ? A GLU 73 ? A GLU 72 ? 1_555 154.9 ? 35 O ? A GLU 68 ? A GLU 67 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE2 ? A GLU 73 ? A GLU 72 ? 1_555 120.0 ? 36 OE1 ? A GLU 73 ? A GLU 72 ? 1_555 CA ? C CA . ? A CA 93 ? 1_555 OE2 ? A GLU 73 ? A GLU 72 ? 1_555 48.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_special_symmetry 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -3.1300 -5.6095 -2.5475 -0.1366 -0.1165 0.0335 0.0424 -0.0589 -0.0574 6.6647 62.8445 37.5394 6.2364 13.0848 -13.7471 -0.0570 0.4669 -0.4099 -0.3232 0.5791 2.5121 0.3749 -0.0982 -1.7425 'X-RAY DIFFRACTION' 2 ? refined 1.7523 5.8113 -6.7006 0.0669 -0.1586 -0.1943 0.0562 -0.0819 -0.0233 3.6248 51.1012 1.0544 13.3126 -1.9547 -7.1557 -0.2919 0.4607 -0.1688 0.3671 0.0347 0.6822 -0.4803 -0.6324 -0.8096 'X-RAY DIFFRACTION' 3 ? refined 5.5472 16.7001 -4.8596 -0.0207 -0.2199 -0.2012 0.0610 -0.0180 -0.0044 7.8439 6.8392 9.9287 -0.2828 -2.9270 0.2941 -0.0372 0.0070 0.0302 0.4562 0.4186 0.1919 -0.8963 -0.4163 -0.0556 'X-RAY DIFFRACTION' 4 ? refined 10.6057 17.4761 5.4754 -0.1286 -0.1420 -0.1713 0.0207 -0.0257 0.0245 7.8121 7.9720 5.5609 2.1654 -2.6962 1.0151 0.2585 -0.2202 -0.0383 -0.5317 0.0571 -0.2965 0.2637 -0.3990 0.0553 'X-RAY DIFFRACTION' 5 ? refined 12.9293 8.8272 -3.5180 -0.0981 -0.2291 -0.1139 0.0060 0.0708 -0.0508 4.7496 12.2918 10.8198 1.4604 -1.0465 -5.7175 0.0256 0.2935 -0.3191 0.3079 -0.2166 -0.3754 -0.8343 0.1771 0.1794 'X-RAY DIFFRACTION' 6 ? refined 7.5998 1.7203 11.8054 0.0146 -0.0268 -0.0522 0.0908 0.0068 -0.0656 3.6749 24.8003 47.8040 9.4904 -11.0571 -30.6121 0.1309 0.2675 -0.3984 -0.8092 -0.1387 -0.2751 1.2338 -0.5214 -0.9075 'X-RAY DIFFRACTION' 7 ? refined 8.5968 15.3378 0.7777 -0.0531 -0.0802 -0.0127 0.0572 0.0504 -0.0004 1.5851 1.2662 1.8063 0.6608 -0.0988 0.8411 0.1579 -0.0191 -0.1387 -0.0311 0.0067 0.0158 -0.1537 -0.1793 0.0046 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 5 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 6 A 16 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 17 A 40 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 41 A 63 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 64 A 78 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 79 A 88 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 96 A 128 ? . . . . ? # _pdbx_phasing_MR.entry_id 3GK2 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 32.040 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 32.040 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 42 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C7 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 27A _pdbx_validate_close_contact.auth_seq_id_2 94 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A GLU 89 ? A GLU 90 3 1 Y 1 A HIS 90 ? A HIS 91 4 1 Y 1 A GLU 91 ? A GLU 92 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 27A C1 C Y N 1 27A C2 C Y N 2 27A C3 C Y N 3 27A C4 C Y N 4 27A C5 C Y N 5 27A C6 C Y N 6 27A C7 C N N 7 27A C8 C N N 8 27A C9 C N N 9 27A C10 C N N 10 27A C11 C N N 11 27A C12 C N N 12 27A C13 C N N 13 27A N5 N N N 14 27A S1 S N N 15 27A N4 N N N 16 27A N3 N N N 17 27A N1 N N N 18 27A N2 N N N 19 27A H1 H N N 20 27A H2 H N N 21 27A H5 H N N 22 27A H6 H N N 23 27A H7 H N N 24 27A H7A H N N 25 27A H8 H N N 26 27A H8A H N N 27 27A H9 H N N 28 27A H9A H N N 29 27A H10 H N N 30 27A H10A H N N 31 27A H11 H N N 32 27A H11A H N N 33 27A H11B H N N 34 27A H12 H N N 35 27A H12A H N N 36 27A HN5 H N N 37 27A HN5A H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CA CA CA N N 112 CAC AS AS N N 113 CAC O1 O N N 114 CAC O2 O N N 115 CAC C1 C N N 116 CAC C2 C N N 117 CAC H11 H N N 118 CAC H12 H N N 119 CAC H13 H N N 120 CAC H21 H N N 121 CAC H22 H N N 122 CAC H23 H N N 123 CYS N N N N 124 CYS CA C N R 125 CYS C C N N 126 CYS O O N N 127 CYS CB C N N 128 CYS SG S N N 129 CYS OXT O N N 130 CYS H H N N 131 CYS H2 H N N 132 CYS HA H N N 133 CYS HB2 H N N 134 CYS HB3 H N N 135 CYS HG H N N 136 CYS HXT H N N 137 GLN N N N N 138 GLN CA C N S 139 GLN C C N N 140 GLN O O N N 141 GLN CB C N N 142 GLN CG C N N 143 GLN CD C N N 144 GLN OE1 O N N 145 GLN NE2 N N N 146 GLN OXT O N N 147 GLN H H N N 148 GLN H2 H N N 149 GLN HA H N N 150 GLN HB2 H N N 151 GLN HB3 H N N 152 GLN HG2 H N N 153 GLN HG3 H N N 154 GLN HE21 H N N 155 GLN HE22 H N N 156 GLN HXT H N N 157 GLU N N N N 158 GLU CA C N S 159 GLU C C N N 160 GLU O O N N 161 GLU CB C N N 162 GLU CG C N N 163 GLU CD C N N 164 GLU OE1 O N N 165 GLU OE2 O N N 166 GLU OXT O N N 167 GLU H H N N 168 GLU H2 H N N 169 GLU HA H N N 170 GLU HB2 H N N 171 GLU HB3 H N N 172 GLU HG2 H N N 173 GLU HG3 H N N 174 GLU HE2 H N N 175 GLU HXT H N N 176 GLY N N N N 177 GLY CA C N N 178 GLY C C N N 179 GLY O O N N 180 GLY OXT O N N 181 GLY H H N N 182 GLY H2 H N N 183 GLY HA2 H N N 184 GLY HA3 H N N 185 GLY HXT H N N 186 HIS N N N N 187 HIS CA C N S 188 HIS C C N N 189 HIS O O N N 190 HIS CB C N N 191 HIS CG C Y N 192 HIS ND1 N Y N 193 HIS CD2 C Y N 194 HIS CE1 C Y N 195 HIS NE2 N Y N 196 HIS OXT O N N 197 HIS H H N N 198 HIS H2 H N N 199 HIS HA H N N 200 HIS HB2 H N N 201 HIS HB3 H N N 202 HIS HD1 H N N 203 HIS HD2 H N N 204 HIS HE1 H N N 205 HIS HE2 H N N 206 HIS HXT H N N 207 HOH O O N N 208 HOH H1 H N N 209 HOH H2 H N N 210 ILE N N N N 211 ILE CA C N S 212 ILE C C N N 213 ILE O O N N 214 ILE CB C N S 215 ILE CG1 C N N 216 ILE CG2 C N N 217 ILE CD1 C N N 218 ILE OXT O N N 219 ILE H H N N 220 ILE H2 H N N 221 ILE HA H N N 222 ILE HB H N N 223 ILE HG12 H N N 224 ILE HG13 H N N 225 ILE HG21 H N N 226 ILE HG22 H N N 227 ILE HG23 H N N 228 ILE HD11 H N N 229 ILE HD12 H N N 230 ILE HD13 H N N 231 ILE HXT H N N 232 LEU N N N N 233 LEU CA C N S 234 LEU C C N N 235 LEU O O N N 236 LEU CB C N N 237 LEU CG C N N 238 LEU CD1 C N N 239 LEU CD2 C N N 240 LEU OXT O N N 241 LEU H H N N 242 LEU H2 H N N 243 LEU HA H N N 244 LEU HB2 H N N 245 LEU HB3 H N N 246 LEU HG H N N 247 LEU HD11 H N N 248 LEU HD12 H N N 249 LEU HD13 H N N 250 LEU HD21 H N N 251 LEU HD22 H N N 252 LEU HD23 H N N 253 LEU HXT H N N 254 LYS N N N N 255 LYS CA C N S 256 LYS C C N N 257 LYS O O N N 258 LYS CB C N N 259 LYS CG C N N 260 LYS CD C N N 261 LYS CE C N N 262 LYS NZ N N N 263 LYS OXT O N N 264 LYS H H N N 265 LYS H2 H N N 266 LYS HA H N N 267 LYS HB2 H N N 268 LYS HB3 H N N 269 LYS HG2 H N N 270 LYS HG3 H N N 271 LYS HD2 H N N 272 LYS HD3 H N N 273 LYS HE2 H N N 274 LYS HE3 H N N 275 LYS HZ1 H N N 276 LYS HZ2 H N N 277 LYS HZ3 H N N 278 LYS HXT H N N 279 MET N N N N 280 MET CA C N S 281 MET C C N N 282 MET O O N N 283 MET CB C N N 284 MET CG C N N 285 MET SD S N N 286 MET CE C N N 287 MET OXT O N N 288 MET H H N N 289 MET H2 H N N 290 MET HA H N N 291 MET HB2 H N N 292 MET HB3 H N N 293 MET HG2 H N N 294 MET HG3 H N N 295 MET HE1 H N N 296 MET HE2 H N N 297 MET HE3 H N N 298 MET HXT H N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 SER N N N N 323 SER CA C N S 324 SER C C N N 325 SER O O N N 326 SER CB C N N 327 SER OG O N N 328 SER OXT O N N 329 SER H H N N 330 SER H2 H N N 331 SER HA H N N 332 SER HB2 H N N 333 SER HB3 H N N 334 SER HG H N N 335 SER HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TYR N N N N 354 TYR CA C N S 355 TYR C C N N 356 TYR O O N N 357 TYR CB C N N 358 TYR CG C Y N 359 TYR CD1 C Y N 360 TYR CD2 C Y N 361 TYR CE1 C Y N 362 TYR CE2 C Y N 363 TYR CZ C Y N 364 TYR OH O N N 365 TYR OXT O N N 366 TYR H H N N 367 TYR H2 H N N 368 TYR HA H N N 369 TYR HB2 H N N 370 TYR HB3 H N N 371 TYR HD1 H N N 372 TYR HD2 H N N 373 TYR HE1 H N N 374 TYR HE2 H N N 375 TYR HH H N N 376 TYR HXT H N N 377 VAL N N N N 378 VAL CA C N S 379 VAL C C N N 380 VAL O O N N 381 VAL CB C N N 382 VAL CG1 C N N 383 VAL CG2 C N N 384 VAL OXT O N N 385 VAL H H N N 386 VAL H2 H N N 387 VAL HA H N N 388 VAL HB H N N 389 VAL HG11 H N N 390 VAL HG12 H N N 391 VAL HG13 H N N 392 VAL HG21 H N N 393 VAL HG22 H N N 394 VAL HG23 H N N 395 VAL HXT H N N 396 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 27A C1 C2 doub Y N 1 27A C1 C6 sing Y N 2 27A C2 C3 sing Y N 3 27A C3 C4 doub Y N 4 27A C3 N1 sing N N 5 27A C4 C5 sing Y N 6 27A C4 C12 sing N N 7 27A C5 C6 doub Y N 8 27A C7 C8 sing N N 9 27A C7 N1 sing N N 10 27A C8 N2 sing N N 11 27A C9 C10 sing N N 12 27A C9 N2 sing N N 13 27A C10 N1 sing N N 14 27A C11 N2 sing N N 15 27A C12 N3 sing N N 16 27A C13 N5 sing N N 17 27A C13 S1 doub N N 18 27A C13 N4 sing N N 19 27A N4 N3 doub N N 20 27A C1 H1 sing N N 21 27A C2 H2 sing N N 22 27A C5 H5 sing N N 23 27A C6 H6 sing N N 24 27A C7 H7 sing N N 25 27A C7 H7A sing N N 26 27A C8 H8 sing N N 27 27A C8 H8A sing N N 28 27A C9 H9 sing N N 29 27A C9 H9A sing N N 30 27A C10 H10 sing N N 31 27A C10 H10A sing N N 32 27A C11 H11 sing N N 33 27A C11 H11A sing N N 34 27A C11 H11B sing N N 35 27A C12 H12 sing N N 36 27A C12 H12A sing N N 37 27A N5 HN5 sing N N 38 27A N5 HN5A sing N N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CAC AS O1 doub N N 109 CAC AS O2 sing N N 110 CAC AS C1 sing N N 111 CAC AS C2 sing N N 112 CAC C1 H11 sing N N 113 CAC C1 H12 sing N N 114 CAC C1 H13 sing N N 115 CAC C2 H21 sing N N 116 CAC C2 H22 sing N N 117 CAC C2 H23 sing N N 118 CYS N CA sing N N 119 CYS N H sing N N 120 CYS N H2 sing N N 121 CYS CA C sing N N 122 CYS CA CB sing N N 123 CYS CA HA sing N N 124 CYS C O doub N N 125 CYS C OXT sing N N 126 CYS CB SG sing N N 127 CYS CB HB2 sing N N 128 CYS CB HB3 sing N N 129 CYS SG HG sing N N 130 CYS OXT HXT sing N N 131 GLN N CA sing N N 132 GLN N H sing N N 133 GLN N H2 sing N N 134 GLN CA C sing N N 135 GLN CA CB sing N N 136 GLN CA HA sing N N 137 GLN C O doub N N 138 GLN C OXT sing N N 139 GLN CB CG sing N N 140 GLN CB HB2 sing N N 141 GLN CB HB3 sing N N 142 GLN CG CD sing N N 143 GLN CG HG2 sing N N 144 GLN CG HG3 sing N N 145 GLN CD OE1 doub N N 146 GLN CD NE2 sing N N 147 GLN NE2 HE21 sing N N 148 GLN NE2 HE22 sing N N 149 GLN OXT HXT sing N N 150 GLU N CA sing N N 151 GLU N H sing N N 152 GLU N H2 sing N N 153 GLU CA C sing N N 154 GLU CA CB sing N N 155 GLU CA HA sing N N 156 GLU C O doub N N 157 GLU C OXT sing N N 158 GLU CB CG sing N N 159 GLU CB HB2 sing N N 160 GLU CB HB3 sing N N 161 GLU CG CD sing N N 162 GLU CG HG2 sing N N 163 GLU CG HG3 sing N N 164 GLU CD OE1 doub N N 165 GLU CD OE2 sing N N 166 GLU OE2 HE2 sing N N 167 GLU OXT HXT sing N N 168 GLY N CA sing N N 169 GLY N H sing N N 170 GLY N H2 sing N N 171 GLY CA C sing N N 172 GLY CA HA2 sing N N 173 GLY CA HA3 sing N N 174 GLY C O doub N N 175 GLY C OXT sing N N 176 GLY OXT HXT sing N N 177 HIS N CA sing N N 178 HIS N H sing N N 179 HIS N H2 sing N N 180 HIS CA C sing N N 181 HIS CA CB sing N N 182 HIS CA HA sing N N 183 HIS C O doub N N 184 HIS C OXT sing N N 185 HIS CB CG sing N N 186 HIS CB HB2 sing N N 187 HIS CB HB3 sing N N 188 HIS CG ND1 sing Y N 189 HIS CG CD2 doub Y N 190 HIS ND1 CE1 doub Y N 191 HIS ND1 HD1 sing N N 192 HIS CD2 NE2 sing Y N 193 HIS CD2 HD2 sing N N 194 HIS CE1 NE2 sing Y N 195 HIS CE1 HE1 sing N N 196 HIS NE2 HE2 sing N N 197 HIS OXT HXT sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 ILE N CA sing N N 201 ILE N H sing N N 202 ILE N H2 sing N N 203 ILE CA C sing N N 204 ILE CA CB sing N N 205 ILE CA HA sing N N 206 ILE C O doub N N 207 ILE C OXT sing N N 208 ILE CB CG1 sing N N 209 ILE CB CG2 sing N N 210 ILE CB HB sing N N 211 ILE CG1 CD1 sing N N 212 ILE CG1 HG12 sing N N 213 ILE CG1 HG13 sing N N 214 ILE CG2 HG21 sing N N 215 ILE CG2 HG22 sing N N 216 ILE CG2 HG23 sing N N 217 ILE CD1 HD11 sing N N 218 ILE CD1 HD12 sing N N 219 ILE CD1 HD13 sing N N 220 ILE OXT HXT sing N N 221 LEU N CA sing N N 222 LEU N H sing N N 223 LEU N H2 sing N N 224 LEU CA C sing N N 225 LEU CA CB sing N N 226 LEU CA HA sing N N 227 LEU C O doub N N 228 LEU C OXT sing N N 229 LEU CB CG sing N N 230 LEU CB HB2 sing N N 231 LEU CB HB3 sing N N 232 LEU CG CD1 sing N N 233 LEU CG CD2 sing N N 234 LEU CG HG sing N N 235 LEU CD1 HD11 sing N N 236 LEU CD1 HD12 sing N N 237 LEU CD1 HD13 sing N N 238 LEU CD2 HD21 sing N N 239 LEU CD2 HD22 sing N N 240 LEU CD2 HD23 sing N N 241 LEU OXT HXT sing N N 242 LYS N CA sing N N 243 LYS N H sing N N 244 LYS N H2 sing N N 245 LYS CA C sing N N 246 LYS CA CB sing N N 247 LYS CA HA sing N N 248 LYS C O doub N N 249 LYS C OXT sing N N 250 LYS CB CG sing N N 251 LYS CB HB2 sing N N 252 LYS CB HB3 sing N N 253 LYS CG CD sing N N 254 LYS CG HG2 sing N N 255 LYS CG HG3 sing N N 256 LYS CD CE sing N N 257 LYS CD HD2 sing N N 258 LYS CD HD3 sing N N 259 LYS CE NZ sing N N 260 LYS CE HE2 sing N N 261 LYS CE HE3 sing N N 262 LYS NZ HZ1 sing N N 263 LYS NZ HZ2 sing N N 264 LYS NZ HZ3 sing N N 265 LYS OXT HXT sing N N 266 MET N CA sing N N 267 MET N H sing N N 268 MET N H2 sing N N 269 MET CA C sing N N 270 MET CA CB sing N N 271 MET CA HA sing N N 272 MET C O doub N N 273 MET C OXT sing N N 274 MET CB CG sing N N 275 MET CB HB2 sing N N 276 MET CB HB3 sing N N 277 MET CG SD sing N N 278 MET CG HG2 sing N N 279 MET CG HG3 sing N N 280 MET SD CE sing N N 281 MET CE HE1 sing N N 282 MET CE HE2 sing N N 283 MET CE HE3 sing N N 284 MET OXT HXT sing N N 285 PHE N CA sing N N 286 PHE N H sing N N 287 PHE N H2 sing N N 288 PHE CA C sing N N 289 PHE CA CB sing N N 290 PHE CA HA sing N N 291 PHE C O doub N N 292 PHE C OXT sing N N 293 PHE CB CG sing N N 294 PHE CB HB2 sing N N 295 PHE CB HB3 sing N N 296 PHE CG CD1 doub Y N 297 PHE CG CD2 sing Y N 298 PHE CD1 CE1 sing Y N 299 PHE CD1 HD1 sing N N 300 PHE CD2 CE2 doub Y N 301 PHE CD2 HD2 sing N N 302 PHE CE1 CZ doub Y N 303 PHE CE1 HE1 sing N N 304 PHE CE2 CZ sing Y N 305 PHE CE2 HE2 sing N N 306 PHE CZ HZ sing N N 307 PHE OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 '(Z)-2-[2-(4-methylpiperazin-1-yl)benzyl]diazenecarbothioamide' 27A 4 'CACODYLATE ION' CAC 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MHO _pdbx_initial_refinement_model.details 'PDB ENTRY 1MHO' #