data_3GK4
#
_entry.id 3GK4
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.378
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3GK4 pdb_00003gk4 10.2210/pdb3gk4/pdb
RCSB RCSB051960 ? ?
WWPDB D_1000051960 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1MHO 'THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN'
unspecified
PDB 3CR2 'X-ray structure of bovine Zn(2+),Ca(2+)-S100B'
unspecified
PDB 3CR4 'X-ray structure of bovine Pnt,Ca(2+)-S100B'
unspecified
PDB 3CR5 'X-ray structure of bovine Pnt-Zn(2+),Ca(2+)-S100B'
unspecified
PDB 1DT7 'SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB)'
unspecified
PDB 3GK1 .
unspecified
PDB 3GK2 .
unspecified
#
_pdbx_database_status.entry_id 3GK4
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2009-03-09
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Charpentier, T.H.' 1 ?
'Weber, D.J.' 2 ?
'Toth, E.A.' 3 ?
#
_citation.id primary
_citation.title
;Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography.
;
_citation.journal_abbrev Biochemistry
_citation.journal_volume 48
_citation.page_first 6202
_citation.page_last 6212
_citation.year 2009
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 19469484
_citation.pdbx_database_id_DOI 10.1021/bi9005754
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Charpentier, T.H.' 1 ?
primary 'Wilder, P.T.' 2 ?
primary 'Liriano, M.A.' 3 ?
primary 'Varney, K.M.' 4 ?
primary 'Zhong, S.' 5 ?
primary 'Coop, A.' 6 ?
primary 'Pozharski, E.' 7 ?
primary 'MacKerell, A.D.' 8 ?
primary 'Toth, E.A.' 9 ?
primary 'Weber, D.J.' 10 ?
#
_cell.length_a 34.459
_cell.length_b 89.532
_cell.length_c 59.234
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 3GK4
_cell.pdbx_unique_axis ?
_cell.Z_PDB 8
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'C 2 2 21'
_symmetry.entry_id 3GK4
_symmetry.Int_Tables_number 20
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Protein S100-B' 10681.974 1 ? ? ? ?
2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ?
3 non-polymer syn
'ethyl 5-{[(1R)-1-(ethoxycarbonyl)-2-oxopropyl]sulfanyl}-1,2-dihydro[1,2,3]triazolo[1,5-a]quinazoline-3-carboxylate' 404.440 1
? ? ? ?
4 water nat water 18.015 40 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'S100 calcium-binding protein B, S-100 protein subunit beta, S-100 protein beta chain'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
;
_entity_poly.pdbx_seq_one_letter_code_can
;MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
;
_entity_poly.pdbx_strand_id X
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 SER n
1 3 GLU n
1 4 LEU n
1 5 GLU n
1 6 LYS n
1 7 ALA n
1 8 VAL n
1 9 VAL n
1 10 ALA n
1 11 LEU n
1 12 ILE n
1 13 ASP n
1 14 VAL n
1 15 PHE n
1 16 HIS n
1 17 GLN n
1 18 TYR n
1 19 SER n
1 20 GLY n
1 21 ARG n
1 22 GLU n
1 23 GLY n
1 24 ASP n
1 25 LYS n
1 26 HIS n
1 27 LYS n
1 28 LEU n
1 29 LYS n
1 30 LYS n
1 31 SER n
1 32 GLU n
1 33 LEU n
1 34 LYS n
1 35 GLU n
1 36 LEU n
1 37 ILE n
1 38 ASN n
1 39 ASN n
1 40 GLU n
1 41 LEU n
1 42 SER n
1 43 HIS n
1 44 PHE n
1 45 LEU n
1 46 GLU n
1 47 GLU n
1 48 ILE n
1 49 LYS n
1 50 GLU n
1 51 GLN n
1 52 GLU n
1 53 VAL n
1 54 VAL n
1 55 ASP n
1 56 LYS n
1 57 VAL n
1 58 MET n
1 59 GLU n
1 60 THR n
1 61 LEU n
1 62 ASP n
1 63 SER n
1 64 ASP n
1 65 GLY n
1 66 ASP n
1 67 GLY n
1 68 GLU n
1 69 CYS n
1 70 ASP n
1 71 PHE n
1 72 GLN n
1 73 GLU n
1 74 PHE n
1 75 MET n
1 76 ALA n
1 77 PHE n
1 78 VAL n
1 79 ALA n
1 80 MET n
1 81 ILE n
1 82 THR n
1 83 THR n
1 84 ALA n
1 85 CYS n
1 86 HIS n
1 87 GLU n
1 88 PHE n
1 89 PHE n
1 90 GLU n
1 91 HIS n
1 92 GLU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name 'bovine,cow,domestic cattle,domestic cow'
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene S100B
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET11b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code S100B_BOVIN
_struct_ref.pdbx_db_accession P02638
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
;
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3GK4
_struct_ref_seq.pdbx_strand_id X
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 92
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P02638
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 92
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 0
_struct_ref_seq.pdbx_auth_seq_align_end 91
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
53A non-polymer .
'ethyl 5-{[(1R)-1-(ethoxycarbonyl)-2-oxopropyl]sulfanyl}-1,2-dihydro[1,2,3]triazolo[1,5-a]quinazoline-3-carboxylate' ?
'C18 H20 N4 O5 S' 404.440
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.crystals_number 1
_exptl.entry_id 3GK4
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 2.14
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 42.48
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.temp 295
_exptl_crystal_grow.pdbx_details
'35% PEGMME550, 7.5mM CaCl2, 100mM Bis-Tris buffer, 2.5% Glycerol, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.pdbx_collection_date 2008-04-03
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.98
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'SSRL BEAMLINE BL9-1'
_diffrn_source.pdbx_wavelength_list 0.98
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site SSRL
_diffrn_source.pdbx_synchrotron_beamline BL9-1
#
_reflns.entry_id 3GK4
_reflns.d_resolution_high 1.900
_reflns.d_resolution_low 50.000
_reflns.number_obs 7056
_reflns.pdbx_Rmerge_I_obs 0.037
_reflns.pdbx_netI_over_sigmaI 44.176
_reflns.pdbx_chi_squared 1.058
_reflns.pdbx_redundancy 6.300
_reflns.percent_possible_obs 93.600
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.number_all ?
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.90 1.97 ? ? ? 0.273 ? ? 0.847 3.60 ? 473 64.80 1 1
1.97 2.05 ? ? ? 0.243 ? ? 0.937 4.80 ? 599 80.60 2 1
2.05 2.14 ? ? ? 0.171 ? ? 1.016 5.60 ? 699 95.40 3 1
2.14 2.25 ? ? ? 0.122 ? ? 1.065 6.50 ? 733 99.20 4 1
2.25 2.39 ? ? ? 0.100 ? ? 1.151 6.90 ? 749 99.70 5 1
2.39 2.58 ? ? ? 0.068 ? ? 1.183 7.10 ? 740 100.00 6 1
2.58 2.84 ? ? ? 0.052 ? ? 1.135 7.10 ? 766 100.00 7 1
2.84 3.25 ? ? ? 0.050 ? ? 1.025 7.00 ? 744 99.90 8 1
3.25 4.09 ? ? ? 0.034 ? ? 0.934 6.80 ? 761 99.10 9 1
4.09 50.00 ? ? ? 0.024 ? ? 1.060 6.50 ? 792 95.80 10 1
#
_refine.entry_id 3GK4
_refine.ls_d_res_high 1.900
_refine.ls_d_res_low 44.770
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 93.570
_refine.ls_number_reflns_obs 7045
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.210
_refine.ls_R_factor_R_work 0.209
_refine.ls_wR_factor_R_work 0.240
_refine.ls_R_factor_R_free 0.228
_refine.ls_wR_factor_R_free 0.262
_refine.ls_percent_reflns_R_free 4.600
_refine.ls_number_reflns_R_free 326
_refine.B_iso_mean 47.206
_refine.aniso_B[1][1] 1.440
_refine.aniso_B[2][2] -1.830
_refine.aniso_B[3][3] 0.390
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.955
_refine.correlation_coeff_Fo_to_Fc_free 0.947
_refine.overall_SU_R_Cruickshank_DPI 0.214
_refine.overall_SU_R_free 0.172
_refine.pdbx_overall_ESU_R 0.196
_refine.pdbx_overall_ESU_R_Free 0.155
_refine.overall_SU_ML 0.126
_refine.overall_SU_B 8.279
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.200
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.overall_FOM_work_R_set 0.818
_refine.B_iso_max 77.50
_refine.B_iso_min 37.49
_refine.occupancy_max 1.00
_refine.occupancy_min 0.50
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_starting_model 'PDB ENTRY 1MHO'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL'
_refine.pdbx_diffrn_id 1
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 727
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 30
_refine_hist.number_atoms_solvent 40
_refine_hist.number_atoms_total 797
_refine_hist.d_res_high 1.900
_refine_hist.d_res_low 44.770
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 768 0.015 0.022 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1029 1.620 1.997 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 89 5.069 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 40 35.999 26.500 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 145 15.601 15.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 1 17.574 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 109 0.133 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 577 0.006 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 382 0.233 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 534 0.304 0.200 ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 31 0.229 0.200 ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined 9 0.138 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 63 0.239 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 12 0.199 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 459 0.763 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 714 1.144 2.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 376 1.979 3.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 315 3.173 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.901
_refine_ls_shell.d_res_low 1.950
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 60.850
_refine_ls_shell.number_reflns_R_work 317
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.226
_refine_ls_shell.R_factor_R_free 0.343
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 11
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 328
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3GK4
_struct.title 'X-ray structure of bovine SBi523,Ca(2+)-S100B'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3GK4
_struct_keywords.text 'EF hand, Alpha helical, Metal-binding, Nucleus, METAL BINDING PROTEIN'
_struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
E N N 4 ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 SER A 2 ? GLY A 20 ? SER X 1 GLY X 19 1 ? 19
HELX_P HELX_P2 2 LYS A 29 ? LEU A 41 ? LYS X 28 LEU X 40 1 ? 13
HELX_P HELX_P3 3 GLU A 50 ? ASP A 62 ? GLU X 49 ASP X 61 1 ? 13
HELX_P HELX_P4 4 ASP A 70 ? GLU A 90 ? ASP X 69 GLU X 89 1 ? 21
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A SER 19 O ? ? ? 1_555 B CA . CA ? ? X SER 18 X CA 92 1_555 ? ? ? ? ? ? ? 2.316 ? ?
metalc2 metalc ? ? A GLU 22 O ? ? ? 1_555 B CA . CA ? ? X GLU 21 X CA 92 1_555 ? ? ? ? ? ? ? 2.345 ? ?
metalc3 metalc ? ? A ASP 24 O ? ? ? 1_555 B CA . CA ? ? X ASP 23 X CA 92 1_555 ? ? ? ? ? ? ? 2.321 ? ?
metalc4 metalc ? ? A LYS 27 O ? ? ? 1_555 B CA . CA ? ? X LYS 26 X CA 92 1_555 ? ? ? ? ? ? ? 2.462 ? ?
metalc5 metalc ? ? A GLU 32 OE1 ? ? ? 1_555 B CA . CA ? ? X GLU 31 X CA 92 1_555 ? ? ? ? ? ? ? 2.429 ? ?
metalc6 metalc ? ? A GLU 32 OE2 ? ? ? 1_555 B CA . CA ? ? X GLU 31 X CA 92 1_555 ? ? ? ? ? ? ? 2.608 ? ?
metalc7 metalc ? ? A ASP 62 OD1 ? ? ? 1_555 C CA . CA ? ? X ASP 61 X CA 93 1_555 ? ? ? ? ? ? ? 2.197 ? ?
metalc8 metalc ? ? A ASP 64 OD1 ? ? ? 1_555 C CA . CA ? ? X ASP 63 X CA 93 1_555 ? ? ? ? ? ? ? 2.386 ? ?
metalc9 metalc ? ? A ASP 66 OD1 ? ? ? 1_555 C CA . CA ? ? X ASP 65 X CA 93 1_555 ? ? ? ? ? ? ? 2.273 ? ?
metalc10 metalc ? ? A GLU 68 O ? ? ? 1_555 C CA . CA ? ? X GLU 67 X CA 93 1_555 ? ? ? ? ? ? ? 2.410 ? ?
metalc11 metalc ? ? A GLU 73 OE1 ? ? ? 1_555 C CA . CA ? ? X GLU 72 X CA 93 1_555 ? ? ? ? ? ? ? 2.446 ? ?
metalc12 metalc ? ? A GLU 73 OE2 ? ? ? 1_555 C CA . CA ? ? X GLU 72 X CA 93 1_555 ? ? ? ? ? ? ? 2.683 ? ?
metalc13 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? X CA 92 X HOH 117 1_555 ? ? ? ? ? ? ? 2.418 ? ?
metalc14 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? X CA 93 X HOH 113 1_555 ? ? ? ? ? ? ? 2.151 ? ?
#
_struct_conn_type.id metalc
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software X CA 92 ? 6 'BINDING SITE FOR RESIDUE CA X 92'
AC2 Software X CA 93 ? 6 'BINDING SITE FOR RESIDUE CA X 93'
AC3 Software X 53A 94 ? 10 'BINDING SITE FOR RESIDUE 53A X 94'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 SER A 19 ? SER X 18 . ? 1_555 ?
2 AC1 6 GLU A 22 ? GLU X 21 . ? 1_555 ?
3 AC1 6 ASP A 24 ? ASP X 23 . ? 1_555 ?
4 AC1 6 LYS A 27 ? LYS X 26 . ? 1_555 ?
5 AC1 6 GLU A 32 ? GLU X 31 . ? 1_555 ?
6 AC1 6 HOH E . ? HOH X 117 . ? 1_555 ?
7 AC2 6 ASP A 62 ? ASP X 61 . ? 1_555 ?
8 AC2 6 ASP A 64 ? ASP X 63 . ? 1_555 ?
9 AC2 6 ASP A 66 ? ASP X 65 . ? 1_555 ?
10 AC2 6 GLU A 68 ? GLU X 67 . ? 1_555 ?
11 AC2 6 GLU A 73 ? GLU X 72 . ? 1_555 ?
12 AC2 6 HOH E . ? HOH X 113 . ? 1_555 ?
13 AC3 10 SER A 42 ? SER X 41 . ? 3_555 ?
14 AC3 10 HIS A 43 ? HIS X 42 . ? 1_555 ?
15 AC3 10 HIS A 43 ? HIS X 42 . ? 3_555 ?
16 AC3 10 PHE A 44 ? PHE X 43 . ? 1_555 ?
17 AC3 10 LEU A 45 ? LEU X 44 . ? 1_555 ?
18 AC3 10 GLU A 46 ? GLU X 45 . ? 3_555 ?
19 AC3 10 GLU A 46 ? GLU X 45 . ? 1_555 ?
20 AC3 10 HOH E . ? HOH X 132 . ? 3_555 ?
21 AC3 10 HOH E . ? HOH X 132 . ? 1_555 ?
22 AC3 10 HOH E . ? HOH X 133 . ? 3_555 ?
#
_atom_sites.entry_id 3GK4
_atom_sites.fract_transf_matrix[1][1] 0.029020
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.011169
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.016882
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
CA
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 0 0 MET MET X . n
A 1 2 SER 2 1 1 SER SER X . n
A 1 3 GLU 3 2 2 GLU GLU X . n
A 1 4 LEU 4 3 3 LEU LEU X . n
A 1 5 GLU 5 4 4 GLU GLU X . n
A 1 6 LYS 6 5 5 LYS LYS X . n
A 1 7 ALA 7 6 6 ALA ALA X . n
A 1 8 VAL 8 7 7 VAL VAL X . n
A 1 9 VAL 9 8 8 VAL VAL X . n
A 1 10 ALA 10 9 9 ALA ALA X . n
A 1 11 LEU 11 10 10 LEU LEU X . n
A 1 12 ILE 12 11 11 ILE ILE X . n
A 1 13 ASP 13 12 12 ASP ASP X . n
A 1 14 VAL 14 13 13 VAL VAL X . n
A 1 15 PHE 15 14 14 PHE PHE X . n
A 1 16 HIS 16 15 15 HIS HIS X . n
A 1 17 GLN 17 16 16 GLN GLN X . n
A 1 18 TYR 18 17 17 TYR TYR X . n
A 1 19 SER 19 18 18 SER SER X . n
A 1 20 GLY 20 19 19 GLY GLY X . n
A 1 21 ARG 21 20 20 ARG ARG X . n
A 1 22 GLU 22 21 21 GLU GLU X . n
A 1 23 GLY 23 22 22 GLY GLY X . n
A 1 24 ASP 24 23 23 ASP ASP X . n
A 1 25 LYS 25 24 24 LYS LYS X . n
A 1 26 HIS 26 25 25 HIS HIS X . n
A 1 27 LYS 27 26 26 LYS LYS X . n
A 1 28 LEU 28 27 27 LEU LEU X . n
A 1 29 LYS 29 28 28 LYS LYS X . n
A 1 30 LYS 30 29 29 LYS LYS X . n
A 1 31 SER 31 30 30 SER SER X . n
A 1 32 GLU 32 31 31 GLU GLU X . n
A 1 33 LEU 33 32 32 LEU LEU X . n
A 1 34 LYS 34 33 33 LYS LYS X . n
A 1 35 GLU 35 34 34 GLU GLU X . n
A 1 36 LEU 36 35 35 LEU LEU X . n
A 1 37 ILE 37 36 36 ILE ILE X . n
A 1 38 ASN 38 37 37 ASN ASN X . n
A 1 39 ASN 39 38 38 ASN ASN X . n
A 1 40 GLU 40 39 39 GLU GLU X . n
A 1 41 LEU 41 40 40 LEU LEU X . n
A 1 42 SER 42 41 41 SER SER X . n
A 1 43 HIS 43 42 42 HIS HIS X . n
A 1 44 PHE 44 43 43 PHE PHE X . n
A 1 45 LEU 45 44 44 LEU LEU X . n
A 1 46 GLU 46 45 45 GLU GLU X . n
A 1 47 GLU 47 46 46 GLU GLU X . n
A 1 48 ILE 48 47 47 ILE ILE X . n
A 1 49 LYS 49 48 48 LYS LYS X . n
A 1 50 GLU 50 49 49 GLU GLU X . n
A 1 51 GLN 51 50 50 GLN GLN X . n
A 1 52 GLU 52 51 51 GLU GLU X . n
A 1 53 VAL 53 52 52 VAL VAL X . n
A 1 54 VAL 54 53 53 VAL VAL X . n
A 1 55 ASP 55 54 54 ASP ASP X . n
A 1 56 LYS 56 55 55 LYS LYS X . n
A 1 57 VAL 57 56 56 VAL VAL X . n
A 1 58 MET 58 57 57 MET MET X . n
A 1 59 GLU 59 58 58 GLU GLU X . n
A 1 60 THR 60 59 59 THR THR X . n
A 1 61 LEU 61 60 60 LEU LEU X . n
A 1 62 ASP 62 61 61 ASP ASP X . n
A 1 63 SER 63 62 62 SER SER X . n
A 1 64 ASP 64 63 63 ASP ASP X . n
A 1 65 GLY 65 64 64 GLY GLY X . n
A 1 66 ASP 66 65 65 ASP ASP X . n
A 1 67 GLY 67 66 66 GLY GLY X . n
A 1 68 GLU 68 67 67 GLU GLU X . n
A 1 69 CYS 69 68 68 CYS CYS X . n
A 1 70 ASP 70 69 69 ASP ASP X . n
A 1 71 PHE 71 70 70 PHE PHE X . n
A 1 72 GLN 72 71 71 GLN GLN X . n
A 1 73 GLU 73 72 72 GLU GLU X . n
A 1 74 PHE 74 73 73 PHE PHE X . n
A 1 75 MET 75 74 74 MET MET X . n
A 1 76 ALA 76 75 75 ALA ALA X . n
A 1 77 PHE 77 76 76 PHE PHE X . n
A 1 78 VAL 78 77 77 VAL VAL X . n
A 1 79 ALA 79 78 78 ALA ALA X . n
A 1 80 MET 80 79 79 MET MET X . n
A 1 81 ILE 81 80 80 ILE ILE X . n
A 1 82 THR 82 81 81 THR THR X . n
A 1 83 THR 83 82 82 THR THR X . n
A 1 84 ALA 84 83 83 ALA ALA X . n
A 1 85 CYS 85 84 84 CYS CYS X . n
A 1 86 HIS 86 85 85 HIS HIS X . n
A 1 87 GLU 87 86 86 GLU GLU X . n
A 1 88 PHE 88 87 87 PHE PHE X . n
A 1 89 PHE 89 88 88 PHE PHE X . n
A 1 90 GLU 90 89 89 GLU GLU X . n
A 1 91 HIS 91 90 ? ? ? X . n
A 1 92 GLU 92 91 ? ? ? X . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA 1 92 90 CA CA X .
C 2 CA 1 93 91 CA CA X .
D 3 53A 1 94 1 53A 53A X .
E 4 HOH 1 95 1 HOH HOH X .
E 4 HOH 2 96 2 HOH HOH X .
E 4 HOH 3 97 3 HOH HOH X .
E 4 HOH 4 98 4 HOH HOH X .
E 4 HOH 5 99 5 HOH HOH X .
E 4 HOH 6 100 6 HOH HOH X .
E 4 HOH 7 101 7 HOH HOH X .
E 4 HOH 8 102 8 HOH HOH X .
E 4 HOH 9 103 9 HOH HOH X .
E 4 HOH 10 104 10 HOH HOH X .
E 4 HOH 11 105 11 HOH HOH X .
E 4 HOH 12 106 12 HOH HOH X .
E 4 HOH 13 107 13 HOH HOH X .
E 4 HOH 14 108 14 HOH HOH X .
E 4 HOH 15 109 15 HOH HOH X .
E 4 HOH 16 110 16 HOH HOH X .
E 4 HOH 17 111 17 HOH HOH X .
E 4 HOH 18 112 19 HOH HOH X .
E 4 HOH 19 113 21 HOH HOH X .
E 4 HOH 20 114 22 HOH HOH X .
E 4 HOH 21 115 23 HOH HOH X .
E 4 HOH 22 116 24 HOH HOH X .
E 4 HOH 23 117 25 HOH HOH X .
E 4 HOH 24 118 26 HOH HOH X .
E 4 HOH 25 119 27 HOH HOH X .
E 4 HOH 26 120 28 HOH HOH X .
E 4 HOH 27 121 29 HOH HOH X .
E 4 HOH 28 122 30 HOH HOH X .
E 4 HOH 29 123 31 HOH HOH X .
E 4 HOH 30 124 32 HOH HOH X .
E 4 HOH 31 125 33 HOH HOH X .
E 4 HOH 32 126 34 HOH HOH X .
E 4 HOH 33 127 35 HOH HOH X .
E 4 HOH 34 128 36 HOH HOH X .
E 4 HOH 35 129 37 HOH HOH X .
E 4 HOH 36 130 38 HOH HOH X .
E 4 HOH 37 131 39 HOH HOH X .
E 4 HOH 38 132 40 HOH HOH X .
E 4 HOH 39 133 41 HOH HOH X .
E 4 HOH 40 134 42 HOH HOH X .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? A SER 19 ? X SER 18 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? A GLU 22 ? X GLU 21 ? 1_555 102.9 ?
2 O ? A SER 19 ? X SER 18 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? A ASP 24 ? X ASP 23 ? 1_555 85.4 ?
3 O ? A GLU 22 ? X GLU 21 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? A ASP 24 ? X ASP 23 ? 1_555 84.6 ?
4 O ? A SER 19 ? X SER 18 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? A LYS 27 ? X LYS 26 ? 1_555 88.6 ?
5 O ? A GLU 22 ? X GLU 21 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? A LYS 27 ? X LYS 26 ? 1_555 157.5 ?
6 O ? A ASP 24 ? X ASP 23 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? A LYS 27 ? X LYS 26 ? 1_555 77.0 ?
7 O ? A SER 19 ? X SER 18 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE1 ? A GLU 32 ? X GLU 31 ? 1_555 97.2 ?
8 O ? A GLU 22 ? X GLU 21 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE1 ? A GLU 32 ? X GLU 31 ? 1_555 118.3 ?
9 O ? A ASP 24 ? X ASP 23 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE1 ? A GLU 32 ? X GLU 31 ? 1_555 155.3 ?
10 O ? A LYS 27 ? X LYS 26 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE1 ? A GLU 32 ? X GLU 31 ? 1_555 78.5 ?
11 O ? A SER 19 ? X SER 18 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE2 ? A GLU 32 ? X GLU 31 ? 1_555 78.9 ?
12 O ? A GLU 22 ? X GLU 21 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE2 ? A GLU 32 ? X GLU 31 ? 1_555 77.1 ?
13 O ? A ASP 24 ? X ASP 23 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE2 ? A GLU 32 ? X GLU 31 ? 1_555 152.5 ?
14 O ? A LYS 27 ? X LYS 26 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE2 ? A GLU 32 ? X GLU 31 ? 1_555 124.5 ?
15 OE1 ? A GLU 32 ? X GLU 31 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 OE2 ? A GLU 32 ? X GLU 31 ? 1_555 50.6 ?
16 O ? A SER 19 ? X SER 18 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? E HOH . ? X HOH 117 ? 1_555 167.4 ?
17 O ? A GLU 22 ? X GLU 21 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? E HOH . ? X HOH 117 ? 1_555 81.8 ?
18 O ? A ASP 24 ? X ASP 23 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? E HOH . ? X HOH 117 ? 1_555 83.4 ?
19 O ? A LYS 27 ? X LYS 26 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? E HOH . ? X HOH 117 ? 1_555 83.3 ?
20 OE1 ? A GLU 32 ? X GLU 31 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? E HOH . ? X HOH 117 ? 1_555 90.7 ?
21 OE2 ? A GLU 32 ? X GLU 31 ? 1_555 CA ? B CA . ? X CA 92 ? 1_555 O ? E HOH . ? X HOH 117 ? 1_555 113.7 ?
22 OD1 ? A ASP 62 ? X ASP 61 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OD1 ? A ASP 64 ? X ASP 63 ? 1_555 88.6 ?
23 OD1 ? A ASP 62 ? X ASP 61 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OD1 ? A ASP 66 ? X ASP 65 ? 1_555 84.8 ?
24 OD1 ? A ASP 64 ? X ASP 63 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OD1 ? A ASP 66 ? X ASP 65 ? 1_555 77.0 ?
25 OD1 ? A ASP 62 ? X ASP 61 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? A GLU 68 ? X GLU 67 ? 1_555 81.4 ?
26 OD1 ? A ASP 64 ? X ASP 63 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? A GLU 68 ? X GLU 67 ? 1_555 158.1 ?
27 OD1 ? A ASP 66 ? X ASP 65 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? A GLU 68 ? X GLU 67 ? 1_555 82.8 ?
28 OD1 ? A ASP 62 ? X ASP 61 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE1 ? A GLU 73 ? X GLU 72 ? 1_555 115.1 ?
29 OD1 ? A ASP 64 ? X ASP 63 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE1 ? A GLU 73 ? X GLU 72 ? 1_555 122.9 ?
30 OD1 ? A ASP 66 ? X ASP 65 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE1 ? A GLU 73 ? X GLU 72 ? 1_555 150.2 ?
31 O ? A GLU 68 ? X GLU 67 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE1 ? A GLU 73 ? X GLU 72 ? 1_555 78.9 ?
32 OD1 ? A ASP 62 ? X ASP 61 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE2 ? A GLU 73 ? X GLU 72 ? 1_555 90.7 ?
33 OD1 ? A ASP 64 ? X ASP 63 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE2 ? A GLU 73 ? X GLU 72 ? 1_555 80.6 ?
34 OD1 ? A ASP 66 ? X ASP 65 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE2 ? A GLU 73 ? X GLU 72 ? 1_555 157.2 ?
35 O ? A GLU 68 ? X GLU 67 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE2 ? A GLU 73 ? X GLU 72 ? 1_555 118.7 ?
36 OE1 ? A GLU 73 ? X GLU 72 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 OE2 ? A GLU 73 ? X GLU 72 ? 1_555 50.2 ?
37 OD1 ? A ASP 62 ? X ASP 61 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? E HOH . ? X HOH 113 ? 1_555 166.5 ?
38 OD1 ? A ASP 64 ? X ASP 63 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? E HOH . ? X HOH 113 ? 1_555 85.7 ?
39 OD1 ? A ASP 66 ? X ASP 65 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? E HOH . ? X HOH 113 ? 1_555 82.0 ?
40 O ? A GLU 68 ? X GLU 67 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? E HOH . ? X HOH 113 ? 1_555 99.6 ?
41 OE1 ? A GLU 73 ? X GLU 72 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? E HOH . ? X HOH 113 ? 1_555 78.2 ?
42 OE2 ? A GLU 73 ? X GLU 72 ? 1_555 CA ? C CA . ? X CA 93 ? 1_555 O ? E HOH . ? X HOH 113 ? 1_555 100.4 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2009-06-09
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2017-11-01
4 'Structure model' 1 3 2023-09-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' Advisory
2 2 'Structure model' 'Version format compliance'
3 3 'Structure model' 'Refinement description'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
6 4 'Structure model' 'Derived calculations'
7 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
5 4 'Structure model' pdbx_initial_refinement_model
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.pdbx_refine_id
1 ? refined 3.2547 5.5600 -2.4199 -0.1775 -0.0695 -0.0257 0.0426 0.0391 0.0247 24.7486 33.6801 9.3223 -3.2790 -3.1047
10.3868 0.0441 0.3986 -0.4426 -1.2657 0.3560 -2.0300 0.0236 -0.2365 0.7587 'X-RAY DIFFRACTION'
2 ? refined -1.7155 -5.6025 -6.7581 0.0466 -0.1262 -0.2168 0.0773 0.0143 0.0077 5.1265 57.2179 0.2547 11.0537 -0.1935
2.4563 -0.2051 0.1920 0.0130 0.2758 -0.1533 -0.5973 -1.2383 0.1282 0.2594 'X-RAY DIFFRACTION'
3 ? refined -5.4413 -16.4793 -4.8671 -0.0522 -0.1795 -0.1630 0.0061 -0.0165 -0.0270 7.0384 6.6914 6.6023 -0.3689 0.6257
-0.0646 -0.0681 0.0539 0.0142 0.4856 -0.4584 0.0234 -0.7102 0.5881 -0.0075 'X-RAY DIFFRACTION'
4 ? refined -10.4705 -17.1980 5.4103 -0.0682 -0.1558 -0.1316 -0.0165 0.0367 -0.0282 8.4448 6.8593 4.8117 2.1859 2.1908
-0.7480 0.2063 -0.1976 -0.0087 -0.3437 -0.0340 0.5282 0.4743 0.4613 -0.1837 'X-RAY DIFFRACTION'
5 ? refined -12.6237 -8.6122 -3.4917 -0.1516 -0.1712 -0.0406 0.0174 -0.0720 0.0258 5.3273 15.6196 12.5952 5.4898 2.4452
8.0371 -0.0562 0.3182 -0.2620 0.4020 0.1435 0.4363 -0.8102 -0.2044 -0.2012 'X-RAY DIFFRACTION'
6 ? refined -7.1810 -1.6476 12.2504 -0.0022 -0.0568 0.0105 0.0324 0.0334 0.0213 8.2611 8.8860 37.6814 -5.1498 8.8647
6.7376 -0.2095 0.4621 -0.2526 -0.8099 0.2660 -0.1791 1.0238 -0.2251 0.5464 'X-RAY DIFFRACTION'
#
loop_
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.selection_details
1 1 X X 5 ? 1 . . . . 'X-RAY DIFFRACTION' ?
2 2 X X 16 ? 6 . . . . 'X-RAY DIFFRACTION' ?
3 3 X X 40 ? 17 . . . . 'X-RAY DIFFRACTION' ?
4 4 X X 63 ? 41 . . . . 'X-RAY DIFFRACTION' ?
5 5 X X 78 ? 64 . . . . 'X-RAY DIFFRACTION' ?
6 6 X X 88 ? 79 . . . . 'X-RAY DIFFRACTION' ?
#
_pdbx_phasing_MR.entry_id 3GK4
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details ?
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 2.240
_pdbx_phasing_MR.d_res_low_rotation 32.160
_pdbx_phasing_MR.d_res_high_translation 2.240
_pdbx_phasing_MR.d_res_low_translation 32.160
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ?
? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ?
? 2
MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing
http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3
REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4
PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5
HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6
HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 X
_pdbx_validate_close_contact.auth_comp_id_1 SER
_pdbx_validate_close_contact.auth_seq_id_1 41
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 X
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 132
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.08
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 X HIS 90 ? A HIS 91
2 1 Y 1 X GLU 91 ? A GLU 92
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
53A N1 N N N 1
53A N3 N N N 2
53A C4 C N N 3
53A C5 C Y N 4
53A C6 C Y N 5
53A O2 O N N 6
53A N4 N N N 7
53A O3 O N N 8
53A C10 C N N 9
53A C13 C N N 10
53A C7 C N R 11
53A C9 C N N 12
53A O5 O N N 13
53A C15 C N N 14
53A C19 C N N 15
53A S1 S N N 16
53A N2 N N N 17
53A C11 C Y N 18
53A C16 C Y N 19
53A C17 C Y N 20
53A C12 C Y N 21
53A C3 C N N 22
53A C1 C N N 23
53A C8 C N N 24
53A O1 O N N 25
53A O4 O N N 26
53A C14 C N N 27
53A C18 C N N 28
53A HN3 H N N 29
53A HN4 H N N 30
53A H13 H N N 31
53A H13A H N N 32
53A H13B H N N 33
53A H7 H N N 34
53A H15 H N N 35
53A H15A H N N 36
53A H19 H N N 37
53A H19A H N N 38
53A H19B H N N 39
53A H11 H N N 40
53A H16 H N N 41
53A H17 H N N 42
53A H12 H N N 43
53A H14 H N N 44
53A H14A H N N 45
53A H18 H N N 46
53A H18A H N N 47
53A H18B H N N 48
ALA N N N N 49
ALA CA C N S 50
ALA C C N N 51
ALA O O N N 52
ALA CB C N N 53
ALA OXT O N N 54
ALA H H N N 55
ALA H2 H N N 56
ALA HA H N N 57
ALA HB1 H N N 58
ALA HB2 H N N 59
ALA HB3 H N N 60
ALA HXT H N N 61
ARG N N N N 62
ARG CA C N S 63
ARG C C N N 64
ARG O O N N 65
ARG CB C N N 66
ARG CG C N N 67
ARG CD C N N 68
ARG NE N N N 69
ARG CZ C N N 70
ARG NH1 N N N 71
ARG NH2 N N N 72
ARG OXT O N N 73
ARG H H N N 74
ARG H2 H N N 75
ARG HA H N N 76
ARG HB2 H N N 77
ARG HB3 H N N 78
ARG HG2 H N N 79
ARG HG3 H N N 80
ARG HD2 H N N 81
ARG HD3 H N N 82
ARG HE H N N 83
ARG HH11 H N N 84
ARG HH12 H N N 85
ARG HH21 H N N 86
ARG HH22 H N N 87
ARG HXT H N N 88
ASN N N N N 89
ASN CA C N S 90
ASN C C N N 91
ASN O O N N 92
ASN CB C N N 93
ASN CG C N N 94
ASN OD1 O N N 95
ASN ND2 N N N 96
ASN OXT O N N 97
ASN H H N N 98
ASN H2 H N N 99
ASN HA H N N 100
ASN HB2 H N N 101
ASN HB3 H N N 102
ASN HD21 H N N 103
ASN HD22 H N N 104
ASN HXT H N N 105
ASP N N N N 106
ASP CA C N S 107
ASP C C N N 108
ASP O O N N 109
ASP CB C N N 110
ASP CG C N N 111
ASP OD1 O N N 112
ASP OD2 O N N 113
ASP OXT O N N 114
ASP H H N N 115
ASP H2 H N N 116
ASP HA H N N 117
ASP HB2 H N N 118
ASP HB3 H N N 119
ASP HD2 H N N 120
ASP HXT H N N 121
CA CA CA N N 122
CYS N N N N 123
CYS CA C N R 124
CYS C C N N 125
CYS O O N N 126
CYS CB C N N 127
CYS SG S N N 128
CYS OXT O N N 129
CYS H H N N 130
CYS H2 H N N 131
CYS HA H N N 132
CYS HB2 H N N 133
CYS HB3 H N N 134
CYS HG H N N 135
CYS HXT H N N 136
GLN N N N N 137
GLN CA C N S 138
GLN C C N N 139
GLN O O N N 140
GLN CB C N N 141
GLN CG C N N 142
GLN CD C N N 143
GLN OE1 O N N 144
GLN NE2 N N N 145
GLN OXT O N N 146
GLN H H N N 147
GLN H2 H N N 148
GLN HA H N N 149
GLN HB2 H N N 150
GLN HB3 H N N 151
GLN HG2 H N N 152
GLN HG3 H N N 153
GLN HE21 H N N 154
GLN HE22 H N N 155
GLN HXT H N N 156
GLU N N N N 157
GLU CA C N S 158
GLU C C N N 159
GLU O O N N 160
GLU CB C N N 161
GLU CG C N N 162
GLU CD C N N 163
GLU OE1 O N N 164
GLU OE2 O N N 165
GLU OXT O N N 166
GLU H H N N 167
GLU H2 H N N 168
GLU HA H N N 169
GLU HB2 H N N 170
GLU HB3 H N N 171
GLU HG2 H N N 172
GLU HG3 H N N 173
GLU HE2 H N N 174
GLU HXT H N N 175
GLY N N N N 176
GLY CA C N N 177
GLY C C N N 178
GLY O O N N 179
GLY OXT O N N 180
GLY H H N N 181
GLY H2 H N N 182
GLY HA2 H N N 183
GLY HA3 H N N 184
GLY HXT H N N 185
HIS N N N N 186
HIS CA C N S 187
HIS C C N N 188
HIS O O N N 189
HIS CB C N N 190
HIS CG C Y N 191
HIS ND1 N Y N 192
HIS CD2 C Y N 193
HIS CE1 C Y N 194
HIS NE2 N Y N 195
HIS OXT O N N 196
HIS H H N N 197
HIS H2 H N N 198
HIS HA H N N 199
HIS HB2 H N N 200
HIS HB3 H N N 201
HIS HD1 H N N 202
HIS HD2 H N N 203
HIS HE1 H N N 204
HIS HE2 H N N 205
HIS HXT H N N 206
HOH O O N N 207
HOH H1 H N N 208
HOH H2 H N N 209
ILE N N N N 210
ILE CA C N S 211
ILE C C N N 212
ILE O O N N 213
ILE CB C N S 214
ILE CG1 C N N 215
ILE CG2 C N N 216
ILE CD1 C N N 217
ILE OXT O N N 218
ILE H H N N 219
ILE H2 H N N 220
ILE HA H N N 221
ILE HB H N N 222
ILE HG12 H N N 223
ILE HG13 H N N 224
ILE HG21 H N N 225
ILE HG22 H N N 226
ILE HG23 H N N 227
ILE HD11 H N N 228
ILE HD12 H N N 229
ILE HD13 H N N 230
ILE HXT H N N 231
LEU N N N N 232
LEU CA C N S 233
LEU C C N N 234
LEU O O N N 235
LEU CB C N N 236
LEU CG C N N 237
LEU CD1 C N N 238
LEU CD2 C N N 239
LEU OXT O N N 240
LEU H H N N 241
LEU H2 H N N 242
LEU HA H N N 243
LEU HB2 H N N 244
LEU HB3 H N N 245
LEU HG H N N 246
LEU HD11 H N N 247
LEU HD12 H N N 248
LEU HD13 H N N 249
LEU HD21 H N N 250
LEU HD22 H N N 251
LEU HD23 H N N 252
LEU HXT H N N 253
LYS N N N N 254
LYS CA C N S 255
LYS C C N N 256
LYS O O N N 257
LYS CB C N N 258
LYS CG C N N 259
LYS CD C N N 260
LYS CE C N N 261
LYS NZ N N N 262
LYS OXT O N N 263
LYS H H N N 264
LYS H2 H N N 265
LYS HA H N N 266
LYS HB2 H N N 267
LYS HB3 H N N 268
LYS HG2 H N N 269
LYS HG3 H N N 270
LYS HD2 H N N 271
LYS HD3 H N N 272
LYS HE2 H N N 273
LYS HE3 H N N 274
LYS HZ1 H N N 275
LYS HZ2 H N N 276
LYS HZ3 H N N 277
LYS HXT H N N 278
MET N N N N 279
MET CA C N S 280
MET C C N N 281
MET O O N N 282
MET CB C N N 283
MET CG C N N 284
MET SD S N N 285
MET CE C N N 286
MET OXT O N N 287
MET H H N N 288
MET H2 H N N 289
MET HA H N N 290
MET HB2 H N N 291
MET HB3 H N N 292
MET HG2 H N N 293
MET HG3 H N N 294
MET HE1 H N N 295
MET HE2 H N N 296
MET HE3 H N N 297
MET HXT H N N 298
PHE N N N N 299
PHE CA C N S 300
PHE C C N N 301
PHE O O N N 302
PHE CB C N N 303
PHE CG C Y N 304
PHE CD1 C Y N 305
PHE CD2 C Y N 306
PHE CE1 C Y N 307
PHE CE2 C Y N 308
PHE CZ C Y N 309
PHE OXT O N N 310
PHE H H N N 311
PHE H2 H N N 312
PHE HA H N N 313
PHE HB2 H N N 314
PHE HB3 H N N 315
PHE HD1 H N N 316
PHE HD2 H N N 317
PHE HE1 H N N 318
PHE HE2 H N N 319
PHE HZ H N N 320
PHE HXT H N N 321
SER N N N N 322
SER CA C N S 323
SER C C N N 324
SER O O N N 325
SER CB C N N 326
SER OG O N N 327
SER OXT O N N 328
SER H H N N 329
SER H2 H N N 330
SER HA H N N 331
SER HB2 H N N 332
SER HB3 H N N 333
SER HG H N N 334
SER HXT H N N 335
THR N N N N 336
THR CA C N S 337
THR C C N N 338
THR O O N N 339
THR CB C N R 340
THR OG1 O N N 341
THR CG2 C N N 342
THR OXT O N N 343
THR H H N N 344
THR H2 H N N 345
THR HA H N N 346
THR HB H N N 347
THR HG1 H N N 348
THR HG21 H N N 349
THR HG22 H N N 350
THR HG23 H N N 351
THR HXT H N N 352
TYR N N N N 353
TYR CA C N S 354
TYR C C N N 355
TYR O O N N 356
TYR CB C N N 357
TYR CG C Y N 358
TYR CD1 C Y N 359
TYR CD2 C Y N 360
TYR CE1 C Y N 361
TYR CE2 C Y N 362
TYR CZ C Y N 363
TYR OH O N N 364
TYR OXT O N N 365
TYR H H N N 366
TYR H2 H N N 367
TYR HA H N N 368
TYR HB2 H N N 369
TYR HB3 H N N 370
TYR HD1 H N N 371
TYR HD2 H N N 372
TYR HE1 H N N 373
TYR HE2 H N N 374
TYR HH H N N 375
TYR HXT H N N 376
VAL N N N N 377
VAL CA C N S 378
VAL C C N N 379
VAL O O N N 380
VAL CB C N N 381
VAL CG1 C N N 382
VAL CG2 C N N 383
VAL OXT O N N 384
VAL H H N N 385
VAL H2 H N N 386
VAL HA H N N 387
VAL HB H N N 388
VAL HG11 H N N 389
VAL HG12 H N N 390
VAL HG13 H N N 391
VAL HG21 H N N 392
VAL HG22 H N N 393
VAL HG23 H N N 394
VAL HXT H N N 395
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
53A N1 N3 sing N N 1
53A N1 C6 sing N N 2
53A N1 C1 sing N N 3
53A N3 N4 sing N N 4
53A C4 C5 sing N N 5
53A C4 S1 sing N N 6
53A C4 N2 doub N N 7
53A C5 C6 doub Y N 8
53A C5 C11 sing Y N 9
53A C6 C12 sing Y N 10
53A O2 C9 doub N N 11
53A N4 C3 sing N N 12
53A O3 C10 doub N N 13
53A C10 C13 sing N N 14
53A C10 C7 sing N N 15
53A C7 C9 sing N N 16
53A C7 S1 sing N N 17
53A C9 O5 sing N N 18
53A O5 C15 sing N N 19
53A C15 C19 sing N N 20
53A N2 C1 sing N N 21
53A C11 C16 doub Y N 22
53A C16 C17 sing Y N 23
53A C17 C12 doub Y N 24
53A C3 C1 doub N N 25
53A C3 C8 sing N N 26
53A C8 O1 doub N N 27
53A C8 O4 sing N N 28
53A O4 C14 sing N N 29
53A C14 C18 sing N N 30
53A N3 HN3 sing N N 31
53A N4 HN4 sing N N 32
53A C13 H13 sing N N 33
53A C13 H13A sing N N 34
53A C13 H13B sing N N 35
53A C7 H7 sing N N 36
53A C15 H15 sing N N 37
53A C15 H15A sing N N 38
53A C19 H19 sing N N 39
53A C19 H19A sing N N 40
53A C19 H19B sing N N 41
53A C11 H11 sing N N 42
53A C16 H16 sing N N 43
53A C17 H17 sing N N 44
53A C12 H12 sing N N 45
53A C14 H14 sing N N 46
53A C14 H14A sing N N 47
53A C18 H18 sing N N 48
53A C18 H18A sing N N 49
53A C18 H18B sing N N 50
ALA N CA sing N N 51
ALA N H sing N N 52
ALA N H2 sing N N 53
ALA CA C sing N N 54
ALA CA CB sing N N 55
ALA CA HA sing N N 56
ALA C O doub N N 57
ALA C OXT sing N N 58
ALA CB HB1 sing N N 59
ALA CB HB2 sing N N 60
ALA CB HB3 sing N N 61
ALA OXT HXT sing N N 62
ARG N CA sing N N 63
ARG N H sing N N 64
ARG N H2 sing N N 65
ARG CA C sing N N 66
ARG CA CB sing N N 67
ARG CA HA sing N N 68
ARG C O doub N N 69
ARG C OXT sing N N 70
ARG CB CG sing N N 71
ARG CB HB2 sing N N 72
ARG CB HB3 sing N N 73
ARG CG CD sing N N 74
ARG CG HG2 sing N N 75
ARG CG HG3 sing N N 76
ARG CD NE sing N N 77
ARG CD HD2 sing N N 78
ARG CD HD3 sing N N 79
ARG NE CZ sing N N 80
ARG NE HE sing N N 81
ARG CZ NH1 sing N N 82
ARG CZ NH2 doub N N 83
ARG NH1 HH11 sing N N 84
ARG NH1 HH12 sing N N 85
ARG NH2 HH21 sing N N 86
ARG NH2 HH22 sing N N 87
ARG OXT HXT sing N N 88
ASN N CA sing N N 89
ASN N H sing N N 90
ASN N H2 sing N N 91
ASN CA C sing N N 92
ASN CA CB sing N N 93
ASN CA HA sing N N 94
ASN C O doub N N 95
ASN C OXT sing N N 96
ASN CB CG sing N N 97
ASN CB HB2 sing N N 98
ASN CB HB3 sing N N 99
ASN CG OD1 doub N N 100
ASN CG ND2 sing N N 101
ASN ND2 HD21 sing N N 102
ASN ND2 HD22 sing N N 103
ASN OXT HXT sing N N 104
ASP N CA sing N N 105
ASP N H sing N N 106
ASP N H2 sing N N 107
ASP CA C sing N N 108
ASP CA CB sing N N 109
ASP CA HA sing N N 110
ASP C O doub N N 111
ASP C OXT sing N N 112
ASP CB CG sing N N 113
ASP CB HB2 sing N N 114
ASP CB HB3 sing N N 115
ASP CG OD1 doub N N 116
ASP CG OD2 sing N N 117
ASP OD2 HD2 sing N N 118
ASP OXT HXT sing N N 119
CYS N CA sing N N 120
CYS N H sing N N 121
CYS N H2 sing N N 122
CYS CA C sing N N 123
CYS CA CB sing N N 124
CYS CA HA sing N N 125
CYS C O doub N N 126
CYS C OXT sing N N 127
CYS CB SG sing N N 128
CYS CB HB2 sing N N 129
CYS CB HB3 sing N N 130
CYS SG HG sing N N 131
CYS OXT HXT sing N N 132
GLN N CA sing N N 133
GLN N H sing N N 134
GLN N H2 sing N N 135
GLN CA C sing N N 136
GLN CA CB sing N N 137
GLN CA HA sing N N 138
GLN C O doub N N 139
GLN C OXT sing N N 140
GLN CB CG sing N N 141
GLN CB HB2 sing N N 142
GLN CB HB3 sing N N 143
GLN CG CD sing N N 144
GLN CG HG2 sing N N 145
GLN CG HG3 sing N N 146
GLN CD OE1 doub N N 147
GLN CD NE2 sing N N 148
GLN NE2 HE21 sing N N 149
GLN NE2 HE22 sing N N 150
GLN OXT HXT sing N N 151
GLU N CA sing N N 152
GLU N H sing N N 153
GLU N H2 sing N N 154
GLU CA C sing N N 155
GLU CA CB sing N N 156
GLU CA HA sing N N 157
GLU C O doub N N 158
GLU C OXT sing N N 159
GLU CB CG sing N N 160
GLU CB HB2 sing N N 161
GLU CB HB3 sing N N 162
GLU CG CD sing N N 163
GLU CG HG2 sing N N 164
GLU CG HG3 sing N N 165
GLU CD OE1 doub N N 166
GLU CD OE2 sing N N 167
GLU OE2 HE2 sing N N 168
GLU OXT HXT sing N N 169
GLY N CA sing N N 170
GLY N H sing N N 171
GLY N H2 sing N N 172
GLY CA C sing N N 173
GLY CA HA2 sing N N 174
GLY CA HA3 sing N N 175
GLY C O doub N N 176
GLY C OXT sing N N 177
GLY OXT HXT sing N N 178
HIS N CA sing N N 179
HIS N H sing N N 180
HIS N H2 sing N N 181
HIS CA C sing N N 182
HIS CA CB sing N N 183
HIS CA HA sing N N 184
HIS C O doub N N 185
HIS C OXT sing N N 186
HIS CB CG sing N N 187
HIS CB HB2 sing N N 188
HIS CB HB3 sing N N 189
HIS CG ND1 sing Y N 190
HIS CG CD2 doub Y N 191
HIS ND1 CE1 doub Y N 192
HIS ND1 HD1 sing N N 193
HIS CD2 NE2 sing Y N 194
HIS CD2 HD2 sing N N 195
HIS CE1 NE2 sing Y N 196
HIS CE1 HE1 sing N N 197
HIS NE2 HE2 sing N N 198
HIS OXT HXT sing N N 199
HOH O H1 sing N N 200
HOH O H2 sing N N 201
ILE N CA sing N N 202
ILE N H sing N N 203
ILE N H2 sing N N 204
ILE CA C sing N N 205
ILE CA CB sing N N 206
ILE CA HA sing N N 207
ILE C O doub N N 208
ILE C OXT sing N N 209
ILE CB CG1 sing N N 210
ILE CB CG2 sing N N 211
ILE CB HB sing N N 212
ILE CG1 CD1 sing N N 213
ILE CG1 HG12 sing N N 214
ILE CG1 HG13 sing N N 215
ILE CG2 HG21 sing N N 216
ILE CG2 HG22 sing N N 217
ILE CG2 HG23 sing N N 218
ILE CD1 HD11 sing N N 219
ILE CD1 HD12 sing N N 220
ILE CD1 HD13 sing N N 221
ILE OXT HXT sing N N 222
LEU N CA sing N N 223
LEU N H sing N N 224
LEU N H2 sing N N 225
LEU CA C sing N N 226
LEU CA CB sing N N 227
LEU CA HA sing N N 228
LEU C O doub N N 229
LEU C OXT sing N N 230
LEU CB CG sing N N 231
LEU CB HB2 sing N N 232
LEU CB HB3 sing N N 233
LEU CG CD1 sing N N 234
LEU CG CD2 sing N N 235
LEU CG HG sing N N 236
LEU CD1 HD11 sing N N 237
LEU CD1 HD12 sing N N 238
LEU CD1 HD13 sing N N 239
LEU CD2 HD21 sing N N 240
LEU CD2 HD22 sing N N 241
LEU CD2 HD23 sing N N 242
LEU OXT HXT sing N N 243
LYS N CA sing N N 244
LYS N H sing N N 245
LYS N H2 sing N N 246
LYS CA C sing N N 247
LYS CA CB sing N N 248
LYS CA HA sing N N 249
LYS C O doub N N 250
LYS C OXT sing N N 251
LYS CB CG sing N N 252
LYS CB HB2 sing N N 253
LYS CB HB3 sing N N 254
LYS CG CD sing N N 255
LYS CG HG2 sing N N 256
LYS CG HG3 sing N N 257
LYS CD CE sing N N 258
LYS CD HD2 sing N N 259
LYS CD HD3 sing N N 260
LYS CE NZ sing N N 261
LYS CE HE2 sing N N 262
LYS CE HE3 sing N N 263
LYS NZ HZ1 sing N N 264
LYS NZ HZ2 sing N N 265
LYS NZ HZ3 sing N N 266
LYS OXT HXT sing N N 267
MET N CA sing N N 268
MET N H sing N N 269
MET N H2 sing N N 270
MET CA C sing N N 271
MET CA CB sing N N 272
MET CA HA sing N N 273
MET C O doub N N 274
MET C OXT sing N N 275
MET CB CG sing N N 276
MET CB HB2 sing N N 277
MET CB HB3 sing N N 278
MET CG SD sing N N 279
MET CG HG2 sing N N 280
MET CG HG3 sing N N 281
MET SD CE sing N N 282
MET CE HE1 sing N N 283
MET CE HE2 sing N N 284
MET CE HE3 sing N N 285
MET OXT HXT sing N N 286
PHE N CA sing N N 287
PHE N H sing N N 288
PHE N H2 sing N N 289
PHE CA C sing N N 290
PHE CA CB sing N N 291
PHE CA HA sing N N 292
PHE C O doub N N 293
PHE C OXT sing N N 294
PHE CB CG sing N N 295
PHE CB HB2 sing N N 296
PHE CB HB3 sing N N 297
PHE CG CD1 doub Y N 298
PHE CG CD2 sing Y N 299
PHE CD1 CE1 sing Y N 300
PHE CD1 HD1 sing N N 301
PHE CD2 CE2 doub Y N 302
PHE CD2 HD2 sing N N 303
PHE CE1 CZ doub Y N 304
PHE CE1 HE1 sing N N 305
PHE CE2 CZ sing Y N 306
PHE CE2 HE2 sing N N 307
PHE CZ HZ sing N N 308
PHE OXT HXT sing N N 309
SER N CA sing N N 310
SER N H sing N N 311
SER N H2 sing N N 312
SER CA C sing N N 313
SER CA CB sing N N 314
SER CA HA sing N N 315
SER C O doub N N 316
SER C OXT sing N N 317
SER CB OG sing N N 318
SER CB HB2 sing N N 319
SER CB HB3 sing N N 320
SER OG HG sing N N 321
SER OXT HXT sing N N 322
THR N CA sing N N 323
THR N H sing N N 324
THR N H2 sing N N 325
THR CA C sing N N 326
THR CA CB sing N N 327
THR CA HA sing N N 328
THR C O doub N N 329
THR C OXT sing N N 330
THR CB OG1 sing N N 331
THR CB CG2 sing N N 332
THR CB HB sing N N 333
THR OG1 HG1 sing N N 334
THR CG2 HG21 sing N N 335
THR CG2 HG22 sing N N 336
THR CG2 HG23 sing N N 337
THR OXT HXT sing N N 338
TYR N CA sing N N 339
TYR N H sing N N 340
TYR N H2 sing N N 341
TYR CA C sing N N 342
TYR CA CB sing N N 343
TYR CA HA sing N N 344
TYR C O doub N N 345
TYR C OXT sing N N 346
TYR CB CG sing N N 347
TYR CB HB2 sing N N 348
TYR CB HB3 sing N N 349
TYR CG CD1 doub Y N 350
TYR CG CD2 sing Y N 351
TYR CD1 CE1 sing Y N 352
TYR CD1 HD1 sing N N 353
TYR CD2 CE2 doub Y N 354
TYR CD2 HD2 sing N N 355
TYR CE1 CZ doub Y N 356
TYR CE1 HE1 sing N N 357
TYR CE2 CZ sing Y N 358
TYR CE2 HE2 sing N N 359
TYR CZ OH sing N N 360
TYR OH HH sing N N 361
TYR OXT HXT sing N N 362
VAL N CA sing N N 363
VAL N H sing N N 364
VAL N H2 sing N N 365
VAL CA C sing N N 366
VAL CA CB sing N N 367
VAL CA HA sing N N 368
VAL C O doub N N 369
VAL C OXT sing N N 370
VAL CB CG1 sing N N 371
VAL CB CG2 sing N N 372
VAL CB HB sing N N 373
VAL CG1 HG11 sing N N 374
VAL CG1 HG12 sing N N 375
VAL CG1 HG13 sing N N 376
VAL CG2 HG21 sing N N 377
VAL CG2 HG22 sing N N 378
VAL CG2 HG23 sing N N 379
VAL OXT HXT sing N N 380
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'CALCIUM ION' CA
3 'ethyl 5-{[(1R)-1-(ethoxycarbonyl)-2-oxopropyl]sulfanyl}-1,2-dihydro[1,2,3]triazolo[1,5-a]quinazoline-3-carboxylate' 53A
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1MHO
_pdbx_initial_refinement_model.details 'PDB ENTRY 1MHO'
#