HEADER TRANSFERASE 10-MAR-09 3GK7 TITLE CRYSTAL STRUCTURE OF 4-HYDROXYBUTYRATE COA-TRANSFERASE FROM TITLE 2 CLOSTRIDIUM AMINOBUTYRICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYBUTYRATE COA-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.8.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM AMINOBUTYRICUM; SOURCE 3 ORGANISM_TAXID: 33953; SOURCE 4 GENE: ABFT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASK-IBA3(+) KEYWDS ALPHA/BETA PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MESSERSCHMIDT,S.MACIEIRA,M.VELARDE REVDAT 2 01-NOV-23 3GK7 1 REMARK SEQADV REVDAT 1 22-DEC-09 3GK7 0 JRNL AUTH S.MACIEIRA,J.ZHANG,M.VELARDE,W.BUCKEL,A.MESSERSCHMIDT JRNL TITL CRYSTAL STRUCTURE OF 4-HYDROXYBUTYRATE COA-TRANSFERASE FROM JRNL TITL 2 CLOSTRIDIUM AMINOBUTYRICUM JRNL REF BIOL.CHEM. V. 390 1251 2009 JRNL REFN ISSN 1431-6730 JRNL PMID 19804364 JRNL DOI 10.1515/BC.2009.147 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 95678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6348 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.352 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6992 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9454 ; 1.211 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 892 ; 5.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;38.553 ;24.965 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1182 ;13.860 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1060 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5214 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3242 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4787 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 470 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4594 ; 0.686 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7184 ; 1.075 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2714 ; 1.941 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2270 ; 3.145 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0707 REMARK 200 MONOCHROMATOR : SILICON (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : 0.57400 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB-ENTRY 2OAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.0015ML PROTEIN SOLUTION (100MM REMARK 280 TRIS/HCL, PH 7.0, 150MM NACL), 0.0003ML SPERMIDINE, 0.0012ML REMARK 280 RESERVOIR SOLUTION (20% PEG 550 MME, 0.1M HEPES, PH 6.5), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.16400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.58200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.74600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.16400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.74600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.58200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 448 REMARK 465 LYS B 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS B 308 O HOH B 676 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 32 -115.05 52.45 REMARK 500 HIS A 57 -170.17 -178.87 REMARK 500 MET A 58 -135.68 -116.35 REMARK 500 PHE A 81 122.19 -171.97 REMARK 500 SER A 138 -58.46 -122.10 REMARK 500 ASP A 139 -115.15 25.88 REMARK 500 SER A 241 -169.02 -129.56 REMARK 500 TYR A 293 -62.42 -100.87 REMARK 500 SER A 332 -108.84 -143.91 REMARK 500 ASP A 391 -109.69 -122.25 REMARK 500 ALA A 440 27.09 -75.75 REMARK 500 CYS B 32 -113.86 57.70 REMARK 500 HIS B 57 -174.82 -177.15 REMARK 500 MET B 58 -134.72 -111.27 REMARK 500 PHE B 81 121.48 -175.42 REMARK 500 SER B 138 -61.33 -126.91 REMARK 500 ASP B 139 -115.03 28.74 REMARK 500 TYR B 293 -61.08 -104.35 REMARK 500 SER B 332 -108.73 -142.59 REMARK 500 ASP B 391 -111.35 -122.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OAS RELATED DB: PDB REMARK 900 RELATED ID: 3D3U RELATED DB: PDB DBREF 3GK7 A 1 438 UNP Q9RM86 Q9RM86_CLOAM 1 438 DBREF 3GK7 B 1 438 UNP Q9RM86 Q9RM86_CLOAM 1 438 SEQADV 3GK7 SER A 439 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 ALA A 440 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 TRP A 441 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 SER A 442 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 HIS A 443 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 PRO A 444 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 GLN A 445 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 PHE A 446 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 GLU A 447 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 LYS A 448 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 SER B 439 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 ALA B 440 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 TRP B 441 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 SER B 442 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 HIS B 443 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 PRO B 444 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 GLN B 445 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 PHE B 446 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 GLU B 447 UNP Q9RM86 EXPRESSION TAG SEQADV 3GK7 LYS B 448 UNP Q9RM86 EXPRESSION TAG SEQRES 1 A 448 MET ASP TRP LYS LYS ILE TYR GLU ASP ARG THR CYS THR SEQRES 2 A 448 ALA ASP GLU ALA VAL LYS SER ILE LYS SER GLY ASP ARG SEQRES 3 A 448 VAL LEU PHE ALA HIS CYS VAL ALA GLU PRO PRO VAL LEU SEQRES 4 A 448 VAL GLU ALA MET VAL ALA ASN ALA ALA ALA TYR LYS ASN SEQRES 5 A 448 VAL THR VAL SER HIS MET VAL THR LEU GLY LYS GLY GLU SEQRES 6 A 448 TYR SER LYS PRO GLU TYR LYS GLU ASN PHE THR PHE GLU SEQRES 7 A 448 GLY TRP PHE THR SER PRO SER THR ARG GLY SER ILE ALA SEQRES 8 A 448 GLU GLY HIS GLY GLN PHE VAL PRO VAL PHE PHE HIS GLU SEQRES 9 A 448 VAL PRO SER LEU ILE ARG LYS ASP ILE PHE HIS VAL ASP SEQRES 10 A 448 VAL PHE MET VAL MET VAL SER PRO PRO ASP HIS ASN GLY SEQRES 11 A 448 PHE CYS CYS VAL GLY VAL SER SER ASP TYR THR MET GLN SEQRES 12 A 448 ALA ILE LYS SER ALA LYS ILE VAL LEU ALA GLU VAL ASN SEQRES 13 A 448 ASP GLN VAL PRO VAL VAL TYR GLY ASP THR PHE VAL HIS SEQRES 14 A 448 VAL SER GLU ILE ASP LYS PHE VAL GLU THR SER HIS PRO SEQRES 15 A 448 LEU PRO GLU ILE GLY LEU PRO LYS ILE GLY GLU VAL GLU SEQRES 16 A 448 ALA ALA ILE GLY LYS HIS CYS ALA SER LEU ILE GLU ASP SEQRES 17 A 448 GLY SER THR LEU GLN LEU GLY ILE GLY ALA ILE PRO ASP SEQRES 18 A 448 ALA VAL LEU SER GLN LEU LYS ASP LYS LYS HIS LEU GLY SEQRES 19 A 448 ILE HIS SER GLU MET ILE SER ASP GLY VAL VAL ASP LEU SEQRES 20 A 448 TYR GLU ALA GLY VAL ILE ASP CYS SER GLN LYS SER ILE SEQRES 21 A 448 ASP LYS GLY LYS MET ALA ILE THR PHE LEU MET GLY THR SEQRES 22 A 448 LYS ARG LEU TYR ASP PHE ALA ALA ASN ASN PRO LYS VAL SEQRES 23 A 448 GLU LEU LYS PRO VAL ASP TYR ILE ASN HIS PRO SER VAL SEQRES 24 A 448 VAL ALA GLN CYS SER LYS MET VAL CYS ILE ASN ALA CYS SEQRES 25 A 448 LEU GLN VAL ASP PHE MET GLY GLN ILE VAL SER ASP SER SEQRES 26 A 448 ILE GLY THR LYS GLN PHE SER GLY VAL GLY GLY GLN VAL SEQRES 27 A 448 ASP PHE VAL ARG GLY ALA SER MET SER ILE ASP GLY LYS SEQRES 28 A 448 GLY LYS ALA ILE ILE ALA MET PRO SER VAL ALA LYS LYS SEQRES 29 A 448 LYS ASP GLY SER MET ILE SER LYS ILE VAL PRO PHE ILE SEQRES 30 A 448 ASP HIS GLY ALA ALA VAL THR THR SER ARG ASN ASP ALA SEQRES 31 A 448 ASP TYR VAL VAL THR GLU TYR GLY ILE ALA GLU MET LYS SEQRES 32 A 448 GLY LYS SER LEU GLN ASP ARG ALA ARG ALA LEU ILE ASN SEQRES 33 A 448 ILE ALA HIS PRO ASP PHE LYS ASP GLU LEU LYS ALA GLU SEQRES 34 A 448 PHE GLU LYS ARG PHE ASN ALA ALA PHE SER ALA TRP SER SEQRES 35 A 448 HIS PRO GLN PHE GLU LYS SEQRES 1 B 448 MET ASP TRP LYS LYS ILE TYR GLU ASP ARG THR CYS THR SEQRES 2 B 448 ALA ASP GLU ALA VAL LYS SER ILE LYS SER GLY ASP ARG SEQRES 3 B 448 VAL LEU PHE ALA HIS CYS VAL ALA GLU PRO PRO VAL LEU SEQRES 4 B 448 VAL GLU ALA MET VAL ALA ASN ALA ALA ALA TYR LYS ASN SEQRES 5 B 448 VAL THR VAL SER HIS MET VAL THR LEU GLY LYS GLY GLU SEQRES 6 B 448 TYR SER LYS PRO GLU TYR LYS GLU ASN PHE THR PHE GLU SEQRES 7 B 448 GLY TRP PHE THR SER PRO SER THR ARG GLY SER ILE ALA SEQRES 8 B 448 GLU GLY HIS GLY GLN PHE VAL PRO VAL PHE PHE HIS GLU SEQRES 9 B 448 VAL PRO SER LEU ILE ARG LYS ASP ILE PHE HIS VAL ASP SEQRES 10 B 448 VAL PHE MET VAL MET VAL SER PRO PRO ASP HIS ASN GLY SEQRES 11 B 448 PHE CYS CYS VAL GLY VAL SER SER ASP TYR THR MET GLN SEQRES 12 B 448 ALA ILE LYS SER ALA LYS ILE VAL LEU ALA GLU VAL ASN SEQRES 13 B 448 ASP GLN VAL PRO VAL VAL TYR GLY ASP THR PHE VAL HIS SEQRES 14 B 448 VAL SER GLU ILE ASP LYS PHE VAL GLU THR SER HIS PRO SEQRES 15 B 448 LEU PRO GLU ILE GLY LEU PRO LYS ILE GLY GLU VAL GLU SEQRES 16 B 448 ALA ALA ILE GLY LYS HIS CYS ALA SER LEU ILE GLU ASP SEQRES 17 B 448 GLY SER THR LEU GLN LEU GLY ILE GLY ALA ILE PRO ASP SEQRES 18 B 448 ALA VAL LEU SER GLN LEU LYS ASP LYS LYS HIS LEU GLY SEQRES 19 B 448 ILE HIS SER GLU MET ILE SER ASP GLY VAL VAL ASP LEU SEQRES 20 B 448 TYR GLU ALA GLY VAL ILE ASP CYS SER GLN LYS SER ILE SEQRES 21 B 448 ASP LYS GLY LYS MET ALA ILE THR PHE LEU MET GLY THR SEQRES 22 B 448 LYS ARG LEU TYR ASP PHE ALA ALA ASN ASN PRO LYS VAL SEQRES 23 B 448 GLU LEU LYS PRO VAL ASP TYR ILE ASN HIS PRO SER VAL SEQRES 24 B 448 VAL ALA GLN CYS SER LYS MET VAL CYS ILE ASN ALA CYS SEQRES 25 B 448 LEU GLN VAL ASP PHE MET GLY GLN ILE VAL SER ASP SER SEQRES 26 B 448 ILE GLY THR LYS GLN PHE SER GLY VAL GLY GLY GLN VAL SEQRES 27 B 448 ASP PHE VAL ARG GLY ALA SER MET SER ILE ASP GLY LYS SEQRES 28 B 448 GLY LYS ALA ILE ILE ALA MET PRO SER VAL ALA LYS LYS SEQRES 29 B 448 LYS ASP GLY SER MET ILE SER LYS ILE VAL PRO PHE ILE SEQRES 30 B 448 ASP HIS GLY ALA ALA VAL THR THR SER ARG ASN ASP ALA SEQRES 31 B 448 ASP TYR VAL VAL THR GLU TYR GLY ILE ALA GLU MET LYS SEQRES 32 B 448 GLY LYS SER LEU GLN ASP ARG ALA ARG ALA LEU ILE ASN SEQRES 33 B 448 ILE ALA HIS PRO ASP PHE LYS ASP GLU LEU LYS ALA GLU SEQRES 34 B 448 PHE GLU LYS ARG PHE ASN ALA ALA PHE SER ALA TRP SER SEQRES 35 B 448 HIS PRO GLN PHE GLU LYS HET SPD A 501 10 HET TRS A 502 8 HET SPD B 501 10 HET TRS B 502 8 HETNAM SPD SPERMIDINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) HETSYN TRS TRIS BUFFER FORMUL 3 SPD 2(C7 H19 N3) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *434(H2 O) HELIX 1 1 MET A 1 ARG A 10 1 10 HELIX 2 2 THR A 13 VAL A 18 1 6 HELIX 3 3 LYS A 19 ILE A 21 5 3 HELIX 4 4 HIS A 31 GLU A 35 5 5 HELIX 5 5 PRO A 36 ASN A 46 1 11 HELIX 6 6 ALA A 47 TYR A 50 5 4 HELIX 7 7 GLY A 64 LYS A 72 5 9 HELIX 8 8 THR A 86 GLY A 93 1 8 HELIX 9 9 PHE A 101 HIS A 103 5 3 HELIX 10 10 GLU A 104 LYS A 111 1 8 HELIX 11 11 TYR A 140 ALA A 148 1 9 HELIX 12 12 SER A 171 ILE A 173 5 3 HELIX 13 13 GLY A 192 SER A 204 1 13 HELIX 14 14 GLY A 217 GLN A 226 1 10 HELIX 15 15 SER A 241 ALA A 250 1 10 HELIX 16 16 THR A 273 ALA A 281 1 9 HELIX 17 17 PRO A 290 ASN A 295 1 6 HELIX 18 18 HIS A 296 ALA A 301 1 6 HELIX 19 19 GLY A 336 MET A 346 1 11 HELIX 20 20 SER A 406 ILE A 417 1 12 HELIX 21 21 ALA A 418 ASP A 421 5 4 HELIX 22 22 PHE A 422 ASN A 435 1 14 HELIX 23 23 HIS A 443 GLU A 447 5 5 HELIX 24 24 MET B 1 ARG B 10 1 10 HELIX 25 25 THR B 13 VAL B 18 1 6 HELIX 26 26 LYS B 19 ILE B 21 5 3 HELIX 27 27 HIS B 31 GLU B 35 5 5 HELIX 28 28 PRO B 36 ASN B 46 1 11 HELIX 29 29 ALA B 47 TYR B 50 5 4 HELIX 30 30 GLY B 64 LYS B 72 5 9 HELIX 31 31 THR B 86 GLY B 93 1 8 HELIX 32 32 PHE B 101 HIS B 103 5 3 HELIX 33 33 GLU B 104 LYS B 111 1 8 HELIX 34 34 TYR B 140 ALA B 148 1 9 HELIX 35 35 SER B 171 ILE B 173 5 3 HELIX 36 36 GLY B 192 SER B 204 1 13 HELIX 37 37 GLY B 217 GLN B 226 1 10 HELIX 38 38 SER B 241 ALA B 250 1 10 HELIX 39 39 THR B 273 ALA B 281 1 9 HELIX 40 40 PRO B 290 ASN B 295 1 6 HELIX 41 41 HIS B 296 ALA B 301 1 6 HELIX 42 42 GLY B 336 MET B 346 1 11 HELIX 43 43 SER B 406 ILE B 417 1 12 HELIX 44 44 ALA B 418 ASP B 421 5 4 HELIX 45 45 PHE B 422 ASN B 435 1 14 SHEET 1 A 7 GLN A 96 PHE A 97 0 SHEET 2 A 7 PHE A 75 GLY A 79 1 N PHE A 77 O GLN A 96 SHEET 3 A 7 VAL A 53 HIS A 57 1 N VAL A 55 O GLU A 78 SHEET 4 A 7 ARG A 26 PHE A 29 1 N VAL A 27 O THR A 54 SHEET 5 A 7 VAL A 118 VAL A 123 1 O MET A 120 N LEU A 28 SHEET 6 A 7 ILE A 150 ASN A 156 1 O LEU A 152 N PHE A 119 SHEET 7 A 7 LYS A 175 THR A 179 1 O THR A 179 N VAL A 155 SHEET 1 B 2 PHE A 131 CYS A 133 0 SHEET 2 B 2 PHE A 167 HIS A 169 -1 O VAL A 168 N CYS A 132 SHEET 1 C 8 VAL A 286 LEU A 288 0 SHEET 2 C 8 MET A 265 LEU A 270 1 N MET A 265 O GLU A 287 SHEET 3 C 8 GLY A 234 ILE A 240 1 N SER A 237 O ALA A 266 SHEET 4 C 8 THR A 211 GLN A 213 1 N LEU A 212 O GLY A 234 SHEET 5 C 8 MET A 306 ALA A 311 1 O VAL A 307 N THR A 211 SHEET 6 C 8 LYS A 353 ALA A 357 1 O ILE A 355 N CYS A 308 SHEET 7 C 8 TYR A 392 THR A 395 1 O TYR A 392 N ALA A 354 SHEET 8 C 8 GLY A 398 GLU A 401 -1 O ALA A 400 N VAL A 393 SHEET 1 D 3 ILE A 321 VAL A 322 0 SHEET 2 D 3 GLN A 314 ASP A 316 -1 N GLN A 314 O VAL A 322 SHEET 3 D 3 ILE A 373 VAL A 374 1 O VAL A 374 N VAL A 315 SHEET 1 E 2 SER A 325 ILE A 326 0 SHEET 2 E 2 LYS A 329 GLN A 330 -1 O LYS A 329 N ILE A 326 SHEET 1 F 2 VAL A 361 LYS A 363 0 SHEET 2 F 2 MET A 369 SER A 371 -1 O ILE A 370 N ALA A 362 SHEET 1 G 7 GLN B 96 PHE B 97 0 SHEET 2 G 7 PHE B 75 GLY B 79 1 N PHE B 77 O GLN B 96 SHEET 3 G 7 VAL B 53 HIS B 57 1 N VAL B 55 O GLU B 78 SHEET 4 G 7 ARG B 26 PHE B 29 1 N VAL B 27 O THR B 54 SHEET 5 G 7 VAL B 118 VAL B 123 1 O MET B 120 N LEU B 28 SHEET 6 G 7 ILE B 150 ASN B 156 1 O GLU B 154 N VAL B 123 SHEET 7 G 7 LYS B 175 THR B 179 1 O THR B 179 N VAL B 155 SHEET 1 H 2 PHE B 131 CYS B 133 0 SHEET 2 H 2 PHE B 167 HIS B 169 -1 O VAL B 168 N CYS B 132 SHEET 1 I 8 VAL B 286 LEU B 288 0 SHEET 2 I 8 MET B 265 LEU B 270 1 N MET B 265 O GLU B 287 SHEET 3 I 8 GLY B 234 ILE B 240 1 N GLU B 238 O THR B 268 SHEET 4 I 8 THR B 211 GLN B 213 1 N LEU B 212 O GLY B 234 SHEET 5 I 8 MET B 306 ALA B 311 1 O ILE B 309 N GLN B 213 SHEET 6 I 8 LYS B 353 ALA B 357 1 O ILE B 355 N CYS B 308 SHEET 7 I 8 TYR B 392 THR B 395 1 O TYR B 392 N ALA B 354 SHEET 8 I 8 GLY B 398 GLU B 401 -1 O ALA B 400 N VAL B 393 SHEET 1 J 3 ILE B 321 VAL B 322 0 SHEET 2 J 3 GLN B 314 ASP B 316 -1 N GLN B 314 O VAL B 322 SHEET 3 J 3 ILE B 373 VAL B 374 1 O VAL B 374 N VAL B 315 SHEET 1 K 2 SER B 325 ILE B 326 0 SHEET 2 K 2 LYS B 329 GLN B 330 -1 O LYS B 329 N ILE B 326 SHEET 1 L 2 VAL B 361 LYS B 363 0 SHEET 2 L 2 MET B 369 SER B 371 -1 O ILE B 370 N ALA B 362 SITE 1 AC1 7 GLU A 238 ALA A 311 GLY A 333 VAL A 334 SITE 2 AC1 7 GLY A 335 GLY A 336 HOH A 654 SITE 1 AC2 9 SER A 124 PRO A 125 ASN A 156 ASP A 157 SITE 2 AC2 9 VAL A 159 HOH A 461 ASN B 282 HOH B 480 SITE 3 AC2 9 TRS B 502 SITE 1 AC3 7 GLU B 238 ALA B 311 SER B 323 GLY B 333 SITE 2 AC3 7 VAL B 334 GLY B 335 GLY B 336 SITE 1 AC4 9 ASN A 282 HOH A 466 TRS A 502 SER B 124 SITE 2 AC4 9 PRO B 125 ASN B 156 ASP B 157 VAL B 159 SITE 3 AC4 9 HOH B 488 CRYST1 116.589 116.589 174.328 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005736 0.00000