data_3GKH # _entry.id 3GKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GKH pdb_00003gkh 10.2210/pdb3gkh/pdb RCSB RCSB051973 ? ? WWPDB D_1000051973 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GKI . unspecified PDB 3GKJ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GKH _pdbx_database_status.recvd_initial_deposition_date 2009-03-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Kwon, H.J.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structure of N-terminal domain of NPC1 reveals distinct subdomains for binding and transfer of cholesterol.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 137 _citation.page_first 1213 _citation.page_last 1224 _citation.year 2009 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19563754 _citation.pdbx_database_id_DOI 10.1016/j.cell.2009.03.049 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kwon, H.J.' 1 ? primary 'Abi-Mosleh, L.' 2 ? primary 'Wang, M.L.' 3 ? primary 'Deisenhofer, J.' 4 ? primary 'Goldstein, J.L.' 5 ? primary 'Brown, M.S.' 6 ? primary 'Infante, R.E.' 7 ? # _cell.entry_id 3GKH _cell.length_a 66.181 _cell.length_b 66.181 _cell.length_c 82.644 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GKH _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Niemann-Pick C1 protein' 25738.939 1 ? 'N70Q, N122Q, N185Q' ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSC FYNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKD ADACQATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIVCGPKPQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GAQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSC FYNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKD ADACQATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIVCGPKPQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLN n 1 4 SER n 1 5 CYS n 1 6 VAL n 1 7 TRP n 1 8 TYR n 1 9 GLY n 1 10 GLU n 1 11 CYS n 1 12 GLY n 1 13 ILE n 1 14 ALA n 1 15 TYR n 1 16 GLY n 1 17 ASP n 1 18 LYS n 1 19 ARG n 1 20 TYR n 1 21 ASN n 1 22 CYS n 1 23 GLU n 1 24 TYR n 1 25 SER n 1 26 GLY n 1 27 PRO n 1 28 PRO n 1 29 LYS n 1 30 PRO n 1 31 LEU n 1 32 PRO n 1 33 LYS n 1 34 ASP n 1 35 GLY n 1 36 TYR n 1 37 ASP n 1 38 LEU n 1 39 VAL n 1 40 GLN n 1 41 GLU n 1 42 LEU n 1 43 CYS n 1 44 PRO n 1 45 GLY n 1 46 PHE n 1 47 PHE n 1 48 PHE n 1 49 GLY n 1 50 GLN n 1 51 VAL n 1 52 SER n 1 53 LEU n 1 54 CYS n 1 55 CYS n 1 56 ASP n 1 57 VAL n 1 58 ARG n 1 59 GLN n 1 60 LEU n 1 61 GLN n 1 62 THR n 1 63 LEU n 1 64 LYS n 1 65 ASP n 1 66 ASN n 1 67 LEU n 1 68 GLN n 1 69 LEU n 1 70 PRO n 1 71 LEU n 1 72 GLN n 1 73 PHE n 1 74 LEU n 1 75 SER n 1 76 ARG n 1 77 CYS n 1 78 PRO n 1 79 SER n 1 80 CYS n 1 81 PHE n 1 82 TYR n 1 83 ASN n 1 84 LEU n 1 85 LEU n 1 86 ASN n 1 87 LEU n 1 88 PHE n 1 89 CYS n 1 90 GLU n 1 91 LEU n 1 92 THR n 1 93 CYS n 1 94 SER n 1 95 PRO n 1 96 ARG n 1 97 GLN n 1 98 SER n 1 99 GLN n 1 100 PHE n 1 101 LEU n 1 102 GLN n 1 103 VAL n 1 104 THR n 1 105 ALA n 1 106 THR n 1 107 GLU n 1 108 ASP n 1 109 TYR n 1 110 VAL n 1 111 ASP n 1 112 PRO n 1 113 VAL n 1 114 THR n 1 115 ASN n 1 116 GLN n 1 117 THR n 1 118 LYS n 1 119 THR n 1 120 ASN n 1 121 VAL n 1 122 LYS n 1 123 GLU n 1 124 LEU n 1 125 GLN n 1 126 TYR n 1 127 TYR n 1 128 VAL n 1 129 GLY n 1 130 GLN n 1 131 SER n 1 132 PHE n 1 133 ALA n 1 134 ASN n 1 135 ALA n 1 136 MET n 1 137 TYR n 1 138 ASN n 1 139 ALA n 1 140 CYS n 1 141 ARG n 1 142 ASP n 1 143 VAL n 1 144 GLU n 1 145 ALA n 1 146 PRO n 1 147 SER n 1 148 SER n 1 149 ASN n 1 150 ASP n 1 151 LYS n 1 152 ALA n 1 153 LEU n 1 154 GLY n 1 155 LEU n 1 156 LEU n 1 157 CYS n 1 158 GLY n 1 159 LYS n 1 160 ASP n 1 161 ALA n 1 162 ASP n 1 163 ALA n 1 164 CYS n 1 165 GLN n 1 166 ALA n 1 167 THR n 1 168 ASN n 1 169 TRP n 1 170 ILE n 1 171 GLU n 1 172 TYR n 1 173 MET n 1 174 PHE n 1 175 ASN n 1 176 LYS n 1 177 ASP n 1 178 ASN n 1 179 GLY n 1 180 GLN n 1 181 ALA n 1 182 PRO n 1 183 PHE n 1 184 THR n 1 185 ILE n 1 186 THR n 1 187 PRO n 1 188 VAL n 1 189 PHE n 1 190 SER n 1 191 ASP n 1 192 PHE n 1 193 PRO n 1 194 VAL n 1 195 HIS n 1 196 GLY n 1 197 MET n 1 198 GLU n 1 199 PRO n 1 200 MET n 1 201 ASN n 1 202 ASN n 1 203 ALA n 1 204 THR n 1 205 LYS n 1 206 GLY n 1 207 CYS n 1 208 ASP n 1 209 GLU n 1 210 SER n 1 211 VAL n 1 212 ASP n 1 213 GLU n 1 214 VAL n 1 215 THR n 1 216 ALA n 1 217 PRO n 1 218 CYS n 1 219 SER n 1 220 CYS n 1 221 GLN n 1 222 ASP n 1 223 CYS n 1 224 SER n 1 225 ILE n 1 226 VAL n 1 227 CYS n 1 228 GLY n 1 229 PRO n 1 230 LYS n 1 231 PRO n 1 232 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NPC1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NPC1_HUMAN _struct_ref.pdbx_db_accession O15118 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCFY NLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDAD ACNATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIVCGPKPQ ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GKH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 232 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15118 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 252 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 252 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GKH GLY A 1 ? UNP O15118 ? ? 'expression tag' 21 1 1 3GKH ALA A 2 ? UNP O15118 ? ? 'expression tag' 22 2 1 3GKH GLN A 50 ? UNP O15118 ASN 70 'engineered mutation' 70 3 1 3GKH GLN A 102 ? UNP O15118 ASN 122 'engineered mutation' 122 4 1 3GKH GLN A 165 ? UNP O15118 ASN 185 'engineered mutation' 185 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GKH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_details '25% PEG 1500, 100 mM MES Acid, 30 mM Glycine, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-08-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3GKH _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.80 _reflns.number_obs 18538 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.080 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 98.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GKH _refine.ls_number_reflns_obs 17455 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.71 _refine.ls_d_res_high 1.81 _refine.ls_percent_reflns_obs 98.10 _refine.ls_R_factor_obs 0.18189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17987 _refine.ls_R_factor_R_free 0.22082 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 956 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 34.011 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.146 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.083 _refine.overall_SU_B 5.353 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1749 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1898 _refine_hist.d_res_high 1.81 _refine_hist.d_res_low 30.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1857 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.374 1.989 ? 2531 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.501 5.000 ? 224 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.769 25.909 ? 88 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.583 15.000 ? 284 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.941 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 275 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1419 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.206 0.200 ? 790 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 1298 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.119 0.200 ? 92 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.150 0.200 ? 32 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.146 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.821 1.500 ? 1147 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.375 2.000 ? 1822 'X-RAY DIFFRACTION' ? r_scbond_it 2.358 3.000 ? 791 'X-RAY DIFFRACTION' ? r_scangle_it 3.612 4.500 ? 709 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.81 _refine_ls_shell.d_res_low 1.853 _refine_ls_shell.number_reflns_R_work 1196 _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.percent_reflns_obs 98.28 _refine_ls_shell.R_factor_R_free 0.262 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GKH _struct.title 'NPC1(NTD)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GKH _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'cholesterol, cholesterol transfer, Disease mutation, Endosome, Glycoprotein, Lysosome, Membrane, Transmembrane, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 32 ? ASP A 34 ? PRO A 52 ASP A 54 5 ? 3 HELX_P HELX_P2 2 GLY A 35 ? CYS A 43 ? GLY A 55 CYS A 63 1 ? 9 HELX_P HELX_P3 3 PRO A 44 ? PHE A 47 ? PRO A 64 PHE A 67 5 ? 4 HELX_P HELX_P4 4 ASP A 56 ? LEU A 67 ? ASP A 76 LEU A 87 1 ? 12 HELX_P HELX_P5 5 LEU A 67 ? SER A 75 ? LEU A 87 SER A 95 1 ? 9 HELX_P HELX_P6 6 CYS A 77 ? SER A 94 ? CYS A 97 SER A 114 1 ? 18 HELX_P HELX_P7 7 ARG A 96 ? GLN A 99 ? ARG A 116 GLN A 119 5 ? 4 HELX_P HELX_P8 8 GLY A 129 ? ARG A 141 ? GLY A 149 ARG A 161 1 ? 13 HELX_P HELX_P9 9 ALA A 152 ? CYS A 157 ? ALA A 172 CYS A 177 1 ? 6 HELX_P HELX_P10 10 ASP A 160 ? CYS A 164 ? ASP A 180 CYS A 184 5 ? 5 HELX_P HELX_P11 11 GLN A 165 ? PHE A 174 ? GLN A 185 PHE A 194 1 ? 10 HELX_P HELX_P12 12 ASN A 175 ? GLY A 179 ? ASN A 195 GLY A 199 5 ? 5 HELX_P HELX_P13 13 SER A 219 ? CYS A 227 ? SER A 239 CYS A 247 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 54 SG ? ? A CYS 25 A CYS 74 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 31 A CYS 42 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 63 A CYS 109 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 93 SG ? ? A CYS 75 A CYS 113 1_555 ? ? ? ? ? ? ? 2.065 ? ? disulf5 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 218 SG ? ? A CYS 97 A CYS 238 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf6 disulf ? ? A CYS 80 SG ? ? ? 1_555 A CYS 140 SG ? ? A CYS 100 A CYS 160 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf7 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 164 SG ? ? A CYS 177 A CYS 184 1_555 ? ? ? ? ? ? ? 2.068 ? ? disulf8 disulf ? ? A CYS 207 SG ? ? ? 1_555 A CYS 223 SG ? ? A CYS 227 A CYS 243 1_555 ? ? ? ? ? ? ? 2.065 ? ? disulf9 disulf ? ? A CYS 220 SG ? ? ? 1_555 A CYS 227 SG ? ? A CYS 240 A CYS 247 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? C NAG . C1 ? ? ? 1_555 A ASN 138 ND2 ? ? A NAG 3 A ASN 158 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale2 covale one ? A ASN 202 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 222 B NAG 1 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.456 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 7 ? TYR A 15 ? TRP A 27 TYR A 35 A 2 LYS A 18 ? GLU A 23 ? LYS A 38 GLU A 43 B 1 LYS A 29 ? PRO A 30 ? LYS A 49 PRO A 50 B 2 SER A 52 ? LEU A 53 ? SER A 72 LEU A 73 C 1 LEU A 101 ? VAL A 110 ? LEU A 121 VAL A 130 C 2 THR A 117 ? VAL A 128 ? THR A 137 VAL A 148 C 3 THR A 184 ? PHE A 189 ? THR A 204 PHE A 209 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 11 ? N CYS A 31 O TYR A 20 ? O TYR A 40 B 1 2 N LYS A 29 ? N LYS A 49 O LEU A 53 ? O LEU A 73 C 1 2 N TYR A 109 ? N TYR A 129 O LYS A 118 ? O LYS A 138 C 2 3 N VAL A 128 ? N VAL A 148 O VAL A 188 ? O VAL A 208 # _database_PDB_matrix.entry_id 3GKH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GKH _atom_sites.fract_transf_matrix[1][1] 0.015110 _atom_sites.fract_transf_matrix[1][2] 0.008724 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017448 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012100 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 21 ? ? ? A . n A 1 2 ALA 2 22 ? ? ? A . n A 1 3 GLN 3 23 23 GLN GLN A . n A 1 4 SER 4 24 24 SER SER A . n A 1 5 CYS 5 25 25 CYS CYS A . n A 1 6 VAL 6 26 26 VAL VAL A . n A 1 7 TRP 7 27 27 TRP TRP A . n A 1 8 TYR 8 28 28 TYR TYR A . n A 1 9 GLY 9 29 29 GLY GLY A . n A 1 10 GLU 10 30 30 GLU GLU A . n A 1 11 CYS 11 31 31 CYS CYS A . n A 1 12 GLY 12 32 32 GLY GLY A . n A 1 13 ILE 13 33 33 ILE ILE A . n A 1 14 ALA 14 34 34 ALA ALA A . n A 1 15 TYR 15 35 35 TYR TYR A . n A 1 16 GLY 16 36 36 GLY GLY A . n A 1 17 ASP 17 37 37 ASP ASP A . n A 1 18 LYS 18 38 38 LYS LYS A . n A 1 19 ARG 19 39 39 ARG ARG A . n A 1 20 TYR 20 40 40 TYR TYR A . n A 1 21 ASN 21 41 41 ASN ASN A . n A 1 22 CYS 22 42 42 CYS CYS A . n A 1 23 GLU 23 43 43 GLU GLU A . n A 1 24 TYR 24 44 44 TYR TYR A . n A 1 25 SER 25 45 45 SER SER A . n A 1 26 GLY 26 46 46 GLY GLY A . n A 1 27 PRO 27 47 47 PRO PRO A . n A 1 28 PRO 28 48 48 PRO PRO A . n A 1 29 LYS 29 49 49 LYS LYS A . n A 1 30 PRO 30 50 50 PRO PRO A . n A 1 31 LEU 31 51 51 LEU LEU A . n A 1 32 PRO 32 52 52 PRO PRO A . n A 1 33 LYS 33 53 53 LYS LYS A . n A 1 34 ASP 34 54 54 ASP ASP A . n A 1 35 GLY 35 55 55 GLY GLY A . n A 1 36 TYR 36 56 56 TYR TYR A . n A 1 37 ASP 37 57 57 ASP ASP A . n A 1 38 LEU 38 58 58 LEU LEU A . n A 1 39 VAL 39 59 59 VAL VAL A . n A 1 40 GLN 40 60 60 GLN GLN A . n A 1 41 GLU 41 61 61 GLU GLU A . n A 1 42 LEU 42 62 62 LEU LEU A . n A 1 43 CYS 43 63 63 CYS CYS A . n A 1 44 PRO 44 64 64 PRO PRO A . n A 1 45 GLY 45 65 65 GLY GLY A . n A 1 46 PHE 46 66 66 PHE PHE A . n A 1 47 PHE 47 67 67 PHE PHE A . n A 1 48 PHE 48 68 68 PHE PHE A . n A 1 49 GLY 49 69 69 GLY GLY A . n A 1 50 GLN 50 70 70 GLN GLN A . n A 1 51 VAL 51 71 71 VAL VAL A . n A 1 52 SER 52 72 72 SER SER A . n A 1 53 LEU 53 73 73 LEU LEU A . n A 1 54 CYS 54 74 74 CYS CYS A . n A 1 55 CYS 55 75 75 CYS CYS A . n A 1 56 ASP 56 76 76 ASP ASP A . n A 1 57 VAL 57 77 77 VAL VAL A . n A 1 58 ARG 58 78 78 ARG ARG A . n A 1 59 GLN 59 79 79 GLN GLN A . n A 1 60 LEU 60 80 80 LEU LEU A . n A 1 61 GLN 61 81 81 GLN GLN A . n A 1 62 THR 62 82 82 THR THR A . n A 1 63 LEU 63 83 83 LEU LEU A . n A 1 64 LYS 64 84 84 LYS LYS A . n A 1 65 ASP 65 85 85 ASP ASP A . n A 1 66 ASN 66 86 86 ASN ASN A . n A 1 67 LEU 67 87 87 LEU LEU A . n A 1 68 GLN 68 88 88 GLN GLN A . n A 1 69 LEU 69 89 89 LEU LEU A . n A 1 70 PRO 70 90 90 PRO PRO A . n A 1 71 LEU 71 91 91 LEU LEU A . n A 1 72 GLN 72 92 92 GLN GLN A . n A 1 73 PHE 73 93 93 PHE PHE A . n A 1 74 LEU 74 94 94 LEU LEU A . n A 1 75 SER 75 95 95 SER SER A . n A 1 76 ARG 76 96 96 ARG ARG A . n A 1 77 CYS 77 97 97 CYS CYS A . n A 1 78 PRO 78 98 98 PRO PRO A . n A 1 79 SER 79 99 99 SER SER A . n A 1 80 CYS 80 100 100 CYS CYS A . n A 1 81 PHE 81 101 101 PHE PHE A . n A 1 82 TYR 82 102 102 TYR TYR A . n A 1 83 ASN 83 103 103 ASN ASN A . n A 1 84 LEU 84 104 104 LEU LEU A . n A 1 85 LEU 85 105 105 LEU LEU A . n A 1 86 ASN 86 106 106 ASN ASN A . n A 1 87 LEU 87 107 107 LEU LEU A . n A 1 88 PHE 88 108 108 PHE PHE A . n A 1 89 CYS 89 109 109 CYS CYS A . n A 1 90 GLU 90 110 110 GLU GLU A . n A 1 91 LEU 91 111 111 LEU LEU A . n A 1 92 THR 92 112 112 THR THR A . n A 1 93 CYS 93 113 113 CYS CYS A . n A 1 94 SER 94 114 114 SER SER A . n A 1 95 PRO 95 115 115 PRO PRO A . n A 1 96 ARG 96 116 116 ARG ARG A . n A 1 97 GLN 97 117 117 GLN GLN A . n A 1 98 SER 98 118 118 SER SER A . n A 1 99 GLN 99 119 119 GLN GLN A . n A 1 100 PHE 100 120 120 PHE PHE A . n A 1 101 LEU 101 121 121 LEU LEU A . n A 1 102 GLN 102 122 122 GLN GLN A . n A 1 103 VAL 103 123 123 VAL VAL A . n A 1 104 THR 104 124 124 THR THR A . n A 1 105 ALA 105 125 125 ALA ALA A . n A 1 106 THR 106 126 126 THR THR A . n A 1 107 GLU 107 127 127 GLU GLU A . n A 1 108 ASP 108 128 128 ASP ASP A . n A 1 109 TYR 109 129 129 TYR TYR A . n A 1 110 VAL 110 130 130 VAL VAL A . n A 1 111 ASP 111 131 131 ASP ASP A . n A 1 112 PRO 112 132 132 PRO PRO A . n A 1 113 VAL 113 133 133 VAL VAL A . n A 1 114 THR 114 134 134 THR THR A . n A 1 115 ASN 115 135 135 ASN ASN A . n A 1 116 GLN 116 136 136 GLN GLN A . n A 1 117 THR 117 137 137 THR THR A . n A 1 118 LYS 118 138 138 LYS LYS A . n A 1 119 THR 119 139 139 THR THR A . n A 1 120 ASN 120 140 140 ASN ASN A . n A 1 121 VAL 121 141 141 VAL VAL A . n A 1 122 LYS 122 142 142 LYS LYS A . n A 1 123 GLU 123 143 143 GLU GLU A . n A 1 124 LEU 124 144 144 LEU LEU A . n A 1 125 GLN 125 145 145 GLN GLN A . n A 1 126 TYR 126 146 146 TYR TYR A . n A 1 127 TYR 127 147 147 TYR TYR A . n A 1 128 VAL 128 148 148 VAL VAL A . n A 1 129 GLY 129 149 149 GLY GLY A . n A 1 130 GLN 130 150 150 GLN GLN A . n A 1 131 SER 131 151 151 SER SER A . n A 1 132 PHE 132 152 152 PHE PHE A . n A 1 133 ALA 133 153 153 ALA ALA A . n A 1 134 ASN 134 154 154 ASN ASN A . n A 1 135 ALA 135 155 155 ALA ALA A . n A 1 136 MET 136 156 156 MET MET A . n A 1 137 TYR 137 157 157 TYR TYR A . n A 1 138 ASN 138 158 158 ASN ASN A . n A 1 139 ALA 139 159 159 ALA ALA A . n A 1 140 CYS 140 160 160 CYS CYS A . n A 1 141 ARG 141 161 161 ARG ARG A . n A 1 142 ASP 142 162 162 ASP ASP A . n A 1 143 VAL 143 163 163 VAL VAL A . n A 1 144 GLU 144 164 164 GLU GLU A . n A 1 145 ALA 145 165 165 ALA ALA A . n A 1 146 PRO 146 166 166 PRO PRO A . n A 1 147 SER 147 167 167 SER SER A . n A 1 148 SER 148 168 168 SER SER A . n A 1 149 ASN 149 169 169 ASN ASN A . n A 1 150 ASP 150 170 170 ASP ASP A . n A 1 151 LYS 151 171 171 LYS LYS A . n A 1 152 ALA 152 172 172 ALA ALA A . n A 1 153 LEU 153 173 173 LEU LEU A . n A 1 154 GLY 154 174 174 GLY GLY A . n A 1 155 LEU 155 175 175 LEU LEU A . n A 1 156 LEU 156 176 176 LEU LEU A . n A 1 157 CYS 157 177 177 CYS CYS A . n A 1 158 GLY 158 178 178 GLY GLY A . n A 1 159 LYS 159 179 179 LYS LYS A . n A 1 160 ASP 160 180 180 ASP ASP A . n A 1 161 ALA 161 181 181 ALA ALA A . n A 1 162 ASP 162 182 182 ASP ASP A . n A 1 163 ALA 163 183 183 ALA ALA A . n A 1 164 CYS 164 184 184 CYS CYS A . n A 1 165 GLN 165 185 185 GLN GLN A . n A 1 166 ALA 166 186 186 ALA ALA A . n A 1 167 THR 167 187 187 THR THR A . n A 1 168 ASN 168 188 188 ASN ASN A . n A 1 169 TRP 169 189 189 TRP TRP A . n A 1 170 ILE 170 190 190 ILE ILE A . n A 1 171 GLU 171 191 191 GLU GLU A . n A 1 172 TYR 172 192 192 TYR TYR A . n A 1 173 MET 173 193 193 MET MET A . n A 1 174 PHE 174 194 194 PHE PHE A . n A 1 175 ASN 175 195 195 ASN ASN A . n A 1 176 LYS 176 196 196 LYS LYS A . n A 1 177 ASP 177 197 197 ASP ASP A . n A 1 178 ASN 178 198 198 ASN ASN A . n A 1 179 GLY 179 199 199 GLY GLY A . n A 1 180 GLN 180 200 200 GLN GLN A . n A 1 181 ALA 181 201 201 ALA ALA A . n A 1 182 PRO 182 202 202 PRO PRO A . n A 1 183 PHE 183 203 203 PHE PHE A . n A 1 184 THR 184 204 204 THR THR A . n A 1 185 ILE 185 205 205 ILE ILE A . n A 1 186 THR 186 206 206 THR THR A . n A 1 187 PRO 187 207 207 PRO PRO A . n A 1 188 VAL 188 208 208 VAL VAL A . n A 1 189 PHE 189 209 209 PHE PHE A . n A 1 190 SER 190 210 210 SER SER A . n A 1 191 ASP 191 211 211 ASP ASP A . n A 1 192 PHE 192 212 212 PHE PHE A . n A 1 193 PRO 193 213 213 PRO PRO A . n A 1 194 VAL 194 214 214 VAL VAL A . n A 1 195 HIS 195 215 215 HIS HIS A . n A 1 196 GLY 196 216 216 GLY GLY A . n A 1 197 MET 197 217 217 MET MET A . n A 1 198 GLU 198 218 218 GLU GLU A . n A 1 199 PRO 199 219 219 PRO PRO A . n A 1 200 MET 200 220 220 MET MET A . n A 1 201 ASN 201 221 221 ASN ASN A . n A 1 202 ASN 202 222 222 ASN ASN A . n A 1 203 ALA 203 223 223 ALA ALA A . n A 1 204 THR 204 224 224 THR THR A . n A 1 205 LYS 205 225 225 LYS LYS A . n A 1 206 GLY 206 226 226 GLY GLY A . n A 1 207 CYS 207 227 227 CYS CYS A . n A 1 208 ASP 208 228 228 ASP ASP A . n A 1 209 GLU 209 229 229 GLU GLU A . n A 1 210 SER 210 230 230 SER SER A . n A 1 211 VAL 211 231 231 VAL VAL A . n A 1 212 ASP 212 232 232 ASP ASP A . n A 1 213 GLU 213 233 233 GLU GLU A . n A 1 214 VAL 214 234 234 VAL VAL A . n A 1 215 THR 215 235 235 THR THR A . n A 1 216 ALA 216 236 236 ALA ALA A . n A 1 217 PRO 217 237 237 PRO PRO A . n A 1 218 CYS 218 238 238 CYS CYS A . n A 1 219 SER 219 239 239 SER SER A . n A 1 220 CYS 220 240 240 CYS CYS A . n A 1 221 GLN 221 241 241 GLN GLN A . n A 1 222 ASP 222 242 242 ASP ASP A . n A 1 223 CYS 223 243 243 CYS CYS A . n A 1 224 SER 224 244 244 SER SER A . n A 1 225 ILE 225 245 245 ILE ILE A . n A 1 226 VAL 226 246 246 VAL VAL A . n A 1 227 CYS 227 247 247 CYS CYS A . n A 1 228 GLY 228 248 ? ? ? A . n A 1 229 PRO 229 249 ? ? ? A . n A 1 230 LYS 230 250 ? ? ? A . n A 1 231 PRO 231 251 ? ? ? A . n A 1 232 GLN 232 252 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 3 3 NAG NAG A . D 4 GOL 1 253 1 GOL GOL A . E 4 GOL 1 254 2 GOL GOL A . F 5 HOH 1 4 4 HOH HOH A . F 5 HOH 2 5 5 HOH HOH A . F 5 HOH 3 6 6 HOH HOH A . F 5 HOH 4 7 7 HOH HOH A . F 5 HOH 5 8 8 HOH HOH A . F 5 HOH 6 9 9 HOH HOH A . F 5 HOH 7 10 10 HOH HOH A . F 5 HOH 8 11 11 HOH HOH A . F 5 HOH 9 12 12 HOH HOH A . F 5 HOH 10 13 13 HOH HOH A . F 5 HOH 11 14 14 HOH HOH A . F 5 HOH 12 15 15 HOH HOH A . F 5 HOH 13 16 16 HOH HOH A . F 5 HOH 14 17 17 HOH HOH A . F 5 HOH 15 18 18 HOH HOH A . F 5 HOH 16 19 19 HOH HOH A . F 5 HOH 17 20 20 HOH HOH A . F 5 HOH 18 255 1 HOH HOH A . F 5 HOH 19 256 2 HOH HOH A . F 5 HOH 20 257 3 HOH HOH A . F 5 HOH 21 258 21 HOH HOH A . F 5 HOH 22 259 22 HOH HOH A . F 5 HOH 23 260 23 HOH HOH A . F 5 HOH 24 261 24 HOH HOH A . F 5 HOH 25 262 25 HOH HOH A . F 5 HOH 26 263 26 HOH HOH A . F 5 HOH 27 264 27 HOH HOH A . F 5 HOH 28 265 28 HOH HOH A . F 5 HOH 29 266 29 HOH HOH A . F 5 HOH 30 267 30 HOH HOH A . F 5 HOH 31 268 31 HOH HOH A . F 5 HOH 32 269 32 HOH HOH A . F 5 HOH 33 270 33 HOH HOH A . F 5 HOH 34 271 34 HOH HOH A . F 5 HOH 35 272 35 HOH HOH A . F 5 HOH 36 273 36 HOH HOH A . F 5 HOH 37 274 37 HOH HOH A . F 5 HOH 38 275 38 HOH HOH A . F 5 HOH 39 276 39 HOH HOH A . F 5 HOH 40 277 40 HOH HOH A . F 5 HOH 41 278 41 HOH HOH A . F 5 HOH 42 279 42 HOH HOH A . F 5 HOH 43 280 43 HOH HOH A . F 5 HOH 44 281 44 HOH HOH A . F 5 HOH 45 282 45 HOH HOH A . F 5 HOH 46 283 46 HOH HOH A . F 5 HOH 47 284 47 HOH HOH A . F 5 HOH 48 285 48 HOH HOH A . F 5 HOH 49 286 49 HOH HOH A . F 5 HOH 50 287 50 HOH HOH A . F 5 HOH 51 288 51 HOH HOH A . F 5 HOH 52 289 52 HOH HOH A . F 5 HOH 53 290 53 HOH HOH A . F 5 HOH 54 291 54 HOH HOH A . F 5 HOH 55 292 55 HOH HOH A . F 5 HOH 56 293 56 HOH HOH A . F 5 HOH 57 294 57 HOH HOH A . F 5 HOH 58 295 58 HOH HOH A . F 5 HOH 59 296 59 HOH HOH A . F 5 HOH 60 297 60 HOH HOH A . F 5 HOH 61 298 61 HOH HOH A . F 5 HOH 62 299 62 HOH HOH A . F 5 HOH 63 300 63 HOH HOH A . F 5 HOH 64 301 64 HOH HOH A . F 5 HOH 65 302 65 HOH HOH A . F 5 HOH 66 303 66 HOH HOH A . F 5 HOH 67 304 67 HOH HOH A . F 5 HOH 68 305 68 HOH HOH A . F 5 HOH 69 306 69 HOH HOH A . F 5 HOH 70 307 70 HOH HOH A . F 5 HOH 71 308 71 HOH HOH A . F 5 HOH 72 309 72 HOH HOH A . F 5 HOH 73 310 73 HOH HOH A . F 5 HOH 74 311 74 HOH HOH A . F 5 HOH 75 312 75 HOH HOH A . F 5 HOH 76 313 76 HOH HOH A . F 5 HOH 77 314 77 HOH HOH A . F 5 HOH 78 315 78 HOH HOH A . F 5 HOH 79 316 79 HOH HOH A . F 5 HOH 80 317 80 HOH HOH A . F 5 HOH 81 318 81 HOH HOH A . F 5 HOH 82 319 82 HOH HOH A . F 5 HOH 83 320 83 HOH HOH A . F 5 HOH 84 321 84 HOH HOH A . F 5 HOH 85 322 85 HOH HOH A . F 5 HOH 86 323 86 HOH HOH A . F 5 HOH 87 324 87 HOH HOH A . F 5 HOH 88 325 88 HOH HOH A . F 5 HOH 89 326 89 HOH HOH A . F 5 HOH 90 327 90 HOH HOH A . F 5 HOH 91 328 91 HOH HOH A . F 5 HOH 92 329 92 HOH HOH A . F 5 HOH 93 330 93 HOH HOH A . F 5 HOH 94 331 94 HOH HOH A . F 5 HOH 95 332 95 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 138 A ASN 158 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 202 A ASN 222 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2021-10-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' struct_asym 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_ref_seq_dif 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen 18 4 'Structure model' chem_comp 19 4 'Structure model' database_2 20 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_asym_id' 2 3 'Structure model' '_atom_site.label_asym_id' 3 3 'Structure model' '_atom_site.label_entity_id' 4 3 'Structure model' '_chem_comp.name' 5 3 'Structure model' '_chem_comp.type' 6 3 'Structure model' '_pdbx_entity_nonpoly.entity_id' 7 3 'Structure model' '_pdbx_entity_nonpoly.name' 8 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 9 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 3 'Structure model' '_struct_conn.pdbx_role' 11 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 3 'Structure model' '_struct_ref_seq_dif.details' 26 4 'Structure model' '_chem_comp.pdbx_synonyms' 27 4 'Structure model' '_database_2.pdbx_DOI' 28 4 'Structure model' '_database_2.pdbx_database_accession' 29 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -32.1388 -32.7046 4.4414 -0.0845 -0.0712 -0.0513 0.0010 -0.0050 -0.0019 1.8460 1.0405 1.5559 -0.2936 -0.0950 0.3063 -0.0364 0.0329 -0.1405 0.0228 -0.0055 0.1465 0.0855 -0.0908 0.0419 'X-RAY DIFFRACTION' 2 ? refined -28.2273 -43.8992 -14.2141 0.1585 0.0745 -0.0157 -0.0209 -0.0470 -0.1452 3.1476 10.4524 4.5505 1.2301 -2.5770 -5.2785 -0.0687 0.6277 -0.4698 -0.8013 0.1020 0.0605 0.7991 -0.3222 -0.0333 'X-RAY DIFFRACTION' 3 ? refined -48.9618 -22.9656 23.8576 -0.0582 0.4712 0.0159 0.0605 0.0399 -0.0395 36.3433 2.4491 22.6776 0.9170 -9.5778 -6.1010 0.0377 -0.9805 -0.1196 -0.1064 0.9302 0.2164 -0.0885 -1.2837 -0.9679 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 A 23 ? ? A 128 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 139 ? ? A 227 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 1 ? ? A 3 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 A 228 ? ? A 247 ? ? ? ? 'X-RAY DIFFRACTION' 5 3 A 129 ? ? A 138 ? ? ? ? 'X-RAY DIFFRACTION' # _software.name REFMAC _software.classification refinement _software.version 5.3.0037 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 28 ? ? -164.73 116.30 2 1 CYS A 31 ? ? -119.68 -122.64 3 1 CYS A 63 ? ? -140.66 58.66 4 1 ASN A 135 ? ? 54.44 16.52 5 1 SER A 167 ? ? 38.12 50.72 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 21 ? A GLY 1 2 1 Y 1 A ALA 22 ? A ALA 2 3 1 Y 1 A GLY 248 ? A GLY 228 4 1 Y 1 A PRO 249 ? A PRO 229 5 1 Y 1 A LYS 250 ? A LYS 230 6 1 Y 1 A PRO 251 ? A PRO 231 7 1 Y 1 A GLN 252 ? A GLN 232 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 1 n B 2 NAG 2 B NAG 2 B NAG 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 GLYCEROL GOL 5 water HOH #