HEADER    TRANSFERASE/TRANSFERASE PRODUCT         11-MAR-09   3GKR              
TITLE     CRYSTAL STRUCTURE OF WEISSELLA VIRIDESCENS FEMX:UDP-MURNAC-HEXAPEPTIDE
TITLE    2 COMPLEX                                                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: FEMX;                                                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 2.3.2.10;                                                        
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: UDP-MURNAC-PEPTIDE;                                        
COMPND   8 CHAIN: B                                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: LACTOBACILLUS VIRIDESCENS;                      
SOURCE   3 ORGANISM_TAXID: 1629;                                                
SOURCE   4 GENE: FEMX;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: ER2566;                                    
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PTYB2;                                    
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS;                          
SOURCE  12 ORGANISM_TAXID: 1280                                                 
KEYWDS    FEMX, PEPTIDOGLYCAN, HEXAPEPTIDE, TRANSFERASE, TRANSFERASE-           
KEYWDS   2 TRANSFERASE PRODUCT COMPLEX                                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    V.DELFOSSE,J.PITON,R.VILLET,M.LECERF,M.ARTHUR,C.MAYER                 
REVDAT   5   01-NOV-23 3GKR    1       REMARK LINK                              
REVDAT   4   05-SEP-12 3GKR    1       REMARK                                   
REVDAT   3   01-AUG-12 3GKR    1       HEADER HET    HETATM REMARK              
REVDAT   3 2                   1       SITE                                     
REVDAT   2   13-JUL-11 3GKR    1       VERSN                                    
REVDAT   1   23-MAR-10 3GKR    0                                                
JRNL        AUTH   V.DELFOSSE,J.PITON,R.VILLET,M.LECERF,M.ARTHUR,C.MAYER        
JRNL        TITL   STRUCTURE OF WEISSELLA VIRIDESCENS FEMX WITH THE             
JRNL        TITL 2 UDP-MURNAC-HEXAPEPTIDE PRODUCT OF THE ALANINE TRANSFER       
JRNL        TITL 3 REACTION                                                     
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.60 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.5.0066                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 27.20                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 100.0                          
REMARK   3   NUMBER OF REFLECTIONS             : 48120                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.175                           
REMARK   3   R VALUE            (WORKING SET) : 0.173                           
REMARK   3   FREE R VALUE                     : 0.216                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2533                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.60                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.64                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 3510                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 96.20                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2360                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 185                          
REMARK   3   BIN FREE R VALUE                    : 0.2980                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2764                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 14                                      
REMARK   3   SOLVENT ATOMS            : 514                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 22.20                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 13.91                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.42420                                              
REMARK   3    B22 (A**2) : 0.41960                                              
REMARK   3    B33 (A**2) : 0.43510                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.09430                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.087         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.092         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.056         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.531         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.950                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.925                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2833 ; 0.029 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  3840 ; 2.349 ; 1.989       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   334 ; 6.071 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   138 ;31.965 ;24.420       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   464 ;13.083 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    17 ;22.350 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   405 ; 0.188 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2157 ; 0.015 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1675 ; 1.466 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2705 ; 2.307 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1158 ; 3.553 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1135 ; 5.217 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 3GKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000051983.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 11-FEB-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : BM30A                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97985                            
REMARK 200  MONOCHROMATOR                  : SI111                              
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 50198                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 27.200                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.4                               
REMARK 200  DATA REDUNDANCY                : 1.700                              
REMARK 200  R MERGE                    (I) : 0.03300                            
REMARK 200  R SYM                      (I) : 0.03300                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 18.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.70                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 96.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.70                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.13900                            
REMARK 200  R SYM FOR SHELL            (I) : 0.13900                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 5.600                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1NE9                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 52.11                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG6000, 0.3M CHLORURE DE SODIUM,    
REMARK 280  0.01M CHLORURE DE MAGNESIUM, 0.07M SULFATE D'AMMONIUM, PH6.5,       
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       50.91800            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400  COMPOUND                                                            
REMARK 400  GROUP: 1                                                            
REMARK 400   NAME: UDP-MURNAC-HEXAPEPTIDE PRODUCT                               
REMARK 400   CHAIN: A, B                                                        
REMARK 400   COMPONENT_1: UDP-MURNAC-PEPTIDE                                    
REMARK 400   COMPONENT_2: ALANINE                                               
REMARK 400   DESCRIPTION: UDP-MURNAC-HEXAPEPTIDE PRODUCT OF THE ALANINE         
REMARK 400                TRANSFER REACTION. ALANINE IS TRANSFERRED BY FEMX     
REMARK 400                TO THE NZ OF LYSINE RESIDUE OF UDP-MURNAC-PEPTIDE     
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     0                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   CG   GLU A    16     O    HOH A   967              1.97            
REMARK 500   O    HOH A   739     O    HOH A   870              2.08            
REMARK 500   O    THR A   297     O    HOH A   904              2.14            
REMARK 500   OE1  GLU A    16     O    HOH A   856              2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   NE2  GLN A     9     O    HOH A   861     1554     2.14            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A 145   NE  -  CZ  -  NH1 ANGL. DEV. =   3.1 DEGREES          
REMARK 500    ARG A 145   NE  -  CZ  -  NH2 ANGL. DEV. =  -4.8 DEGREES          
REMARK 500    ARG A 205   NE  -  CZ  -  NH1 ANGL. DEV. =   3.8 DEGREES          
REMARK 500    ARG A 250   NE  -  CZ  -  NH1 ANGL. DEV. =   3.3 DEGREES          
REMARK 500    LYS B   3   N   -  CA  -  CB  ANGL. DEV. = -13.7 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    MET A  79     -178.12    171.27                                   
REMARK 500    ASN A 130     -106.73   -152.15                                   
REMARK 500    ASP A 135     -178.95    150.18                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 401  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A  64   O                                                      
REMARK 620 2 THR A  66   O    94.6                                              
REMARK 620 3 HOH A 554   O    86.8  85.8                                        
REMARK 620 4 HOH A 607   O    89.9 174.9  92.0                                  
REMARK 620 5 HOH A 803   O    92.7  92.4 178.1  89.8                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 402  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LEU A 280   O                                                      
REMARK 620 2 ASN A 283   OD1 104.7                                              
REMARK 620 3 HOH A 587   O    86.9  92.1                                        
REMARK 620 4 HOH A 665   O    91.2 163.1  94.6                                  
REMARK 620 5 HOH A 781   O    90.8  83.4 174.3  90.7                            
REMARK 620 6 HOH A 850   O   176.0  79.1  91.6  85.3  91.0                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 403  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 PHE A 308   O                                                      
REMARK 620 2 HOH A 662   O   132.0                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA B 101                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF UDP-MURNAC             
REMARK 800  -PENTAPEPTIDE                                                       
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1NE9   RELATED DB: PDB                                   
REMARK 900 APO-FORM STRUCTURE                                                   
REMARK 900 RELATED ID: 1P4N   RELATED DB: PDB                                   
REMARK 900 PROTEIN-SUBSTRATE COMPLEX                                            
REMARK 900 RELATED ID: 1XE4   RELATED DB: PDB                                   
REMARK 900 K36M MUTANT                                                          
REMARK 900 RELATED ID: 1XF8   RELATED DB: PDB                                   
REMARK 900 Y254 MUTANT                                                          
REMARK 900 RELATED ID: 1XIX   RELATED DB: PDB                                   
REMARK 900 APO FORM STRUCTURE FORM II                                           
DBREF  3GKR A    0   335  UNP    Q9EY50   Q9EY50_LACVI     1    336             
DBREF  3GKR B    1     5  PDB    3GKR     3GKR             1      5             
SEQRES   1 A  336  MET PRO VAL LEU ASN LEU ASN ASP PRO GLN ALA VAL GLU          
SEQRES   2 A  336  ARG TYR GLU GLU PHE MET ARG GLN SER PRO TYR GLY GLN          
SEQRES   3 A  336  VAL THR GLN ASP LEU GLY TRP ALA LYS VAL LYS ASN ASN          
SEQRES   4 A  336  TRP GLU PRO VAL ASP VAL TYR LEU GLU ASP ASP GLN GLY          
SEQRES   5 A  336  ALA ILE ILE ALA ALA MET SER MET LEU LEU GLY ASP THR          
SEQRES   6 A  336  PRO THR ASP LYS LYS PHE ALA TYR ALA SER LYS GLY PRO          
SEQRES   7 A  336  VAL MET ASP VAL THR ASP VAL ASP LEU LEU ASP ARG LEU          
SEQRES   8 A  336  VAL ASP GLU ALA VAL LYS ALA LEU ASP GLY ARG ALA TYR          
SEQRES   9 A  336  VAL LEU ARG PHE ASP PRO GLU VAL ALA TYR SER ASP GLU          
SEQRES  10 A  336  PHE ASN THR THR LEU GLN ASP HIS GLY TYR VAL THR ARG          
SEQRES  11 A  336  ASN ARG ASN VAL ALA ASP ALA GLY MET HIS ALA THR ILE          
SEQRES  12 A  336  GLN PRO ARG LEU ASN MET VAL LEU ASP LEU THR LYS PHE          
SEQRES  13 A  336  PRO ASP ALA LYS THR THR LEU ASP LEU TYR PRO SER LYS          
SEQRES  14 A  336  THR LYS SER LYS ILE LYS ARG PRO PHE ARG ASP GLY VAL          
SEQRES  15 A  336  GLU VAL HIS SER GLY ASN SER ALA THR GLU LEU ASP GLU          
SEQRES  16 A  336  PHE PHE LYS THR TYR THR THR MET ALA GLU ARG HIS GLY          
SEQRES  17 A  336  ILE THR HIS ARG PRO ILE GLU TYR PHE GLN ARG MET GLN          
SEQRES  18 A  336  ALA ALA PHE ASP ALA ASP THR MET ARG ILE PHE VAL ALA          
SEQRES  19 A  336  GLU ARG GLU GLY LYS LEU LEU SER THR GLY ILE ALA LEU          
SEQRES  20 A  336  LYS TYR GLY ARG LYS ILE TRP TYR MET TYR ALA GLY SER          
SEQRES  21 A  336  MET ASP GLY ASN THR TYR TYR ALA PRO TYR ALA VAL GLN          
SEQRES  22 A  336  SER GLU MET ILE GLN TRP ALA LEU ASP THR ASN THR ASP          
SEQRES  23 A  336  LEU TYR ASP LEU GLY GLY ILE GLU SER GLU SER THR ASP          
SEQRES  24 A  336  ASP SER LEU TYR VAL PHE LYS HIS VAL PHE VAL LYS ASP          
SEQRES  25 A  336  ALA PRO ARG GLU TYR ILE GLY GLU ILE ASP LYS VAL LEU          
SEQRES  26 A  336  ASP PRO GLU VAL TYR ALA GLU LEU VAL LYS ASP                  
SEQRES   1 B    5  UMA FGA LYS DAL DAL                                          
MODRES 3GKR UMA B    1  ALA                                                     
HET    UMA  B   1      48                                                       
HET    FGA  B   2       9                                                       
HET    DAL  B   4       5                                                       
HET    DAL  B   5       6                                                       
HET     MG  A 401       1                                                       
HET     MG  A 402       1                                                       
HET     MG  A 403       1                                                       
HET    GOL  A 404       6                                                       
HET    ALA  B 101       5                                                       
HETNAM     UMA URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE                
HETNAM     FGA GAMMA-D-GLUTAMIC ACID                                            
HETNAM     DAL D-ALANINE                                                        
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     GOL GLYCEROL                                                         
HETNAM     ALA ALANINE                                                          
HETSYN     FGA D-GLUTAMIC ACID                                                  
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   2  UMA    C23 H36 N4 O20 P2                                            
FORMUL   2  FGA    C5 H9 N O4                                                   
FORMUL   2  DAL    2(C3 H7 N O2)                                                
FORMUL   3   MG    3(MG 2+)                                                     
FORMUL   6  GOL    C3 H8 O3                                                     
FORMUL   7  ALA    C3 H7 N O2                                                   
FORMUL   8  HOH   *514(H2 O)                                                    
HELIX    1   1 ASP A    7  SER A   21  1                                  15    
HELIX    2   2 GLN A   25  GLN A   28  5                                   4    
HELIX    3   3 ASP A   29  LYS A   36  1                                   8    
HELIX    4   4 ASP A   83  ASP A   99  1                                  17    
HELIX    5   5 SER A  114  HIS A  124  1                                  11    
HELIX    6   6 ASN A  130  ALA A  134  5                                   5    
HELIX    7   7 THR A  153  PHE A  155  5                                   3    
HELIX    8   8 THR A  160  TYR A  165  5                                   6    
HELIX    9   9 PRO A  166  ASP A  179  1                                  14    
HELIX   10  10 SER A  188  GLY A  207  1                                  20    
HELIX   11  11 PRO A  212  PHE A  223  1                                  12    
HELIX   12  12 TYR A  266  THR A  282  1                                  17    
HELIX   13  13 ASP A  299  VAL A  309  1                                  11    
HELIX   14  14 ASP A  325  VAL A  333  1                                   9    
SHEET    1   A 6 GLU A  40  GLU A  47  0                                        
SHEET    2   A 6 ILE A  53  GLY A  62 -1  O  MET A  57   N  VAL A  44           
SHEET    3   A 6 LYS A  69  ALA A  73 -1  O  PHE A  70   N  GLY A  62           
SHEET    4   A 6 ALA A 102  PHE A 107  1  O  ARG A 106   N  ALA A  71           
SHEET    5   A 6 GLU A 319  VAL A 323 -1  O  LYS A 322   N  LEU A 105           
SHEET    6   A 6 VAL A 127  ARG A 129 -1  N  VAL A 127   O  ASP A 321           
SHEET    1   B 7 VAL A 181  GLY A 186  0                                        
SHEET    2   B 7 MET A 228  ARG A 235 -1  O  ILE A 230   N  GLY A 186           
SHEET    3   B 7 LYS A 238  TYR A 248 -1  O  SER A 241   N  ALA A 233           
SHEET    4   B 7 LYS A 251  SER A 259 -1  O  TRP A 253   N  LEU A 246           
SHEET    5   B 7 LEU A 286  GLY A 291  1  O  ASP A 288   N  ILE A 252           
SHEET    6   B 7 LEU A 146  ASP A 151 -1  N  LEU A 150   O  TYR A 287           
SHEET    7   B 7 ARG A 314  GLU A 315 -1  O  ARG A 314   N  ASN A 147           
LINK         C22 UMA B   1                 N   FGA B   2     1555   1555  1.35  
LINK         CD  FGA B   2                 N   LYS B   3     1555   1555  1.36  
LINK         C   LYS B   3                 N   DAL B   4     1555   1555  1.33  
LINK         NZ  LYS B   3                 C   ALA B 101     1555   1555  1.48  
LINK         C   DAL B   4                 N   DAL B   5     1555   1555  1.31  
LINK         O   THR A  64                MG    MG A 401     1555   1555  2.47  
LINK         O   THR A  66                MG    MG A 401     1555   1555  2.32  
LINK         O   LEU A 280                MG    MG A 402     1555   1555  2.30  
LINK         OD1 ASN A 283                MG    MG A 402     1555   1555  2.39  
LINK         O   PHE A 308                MG    MG A 403     1555   1555  2.80  
LINK        MG    MG A 401                 O   HOH A 554     1555   1555  2.47  
LINK        MG    MG A 401                 O   HOH A 607     1555   1555  2.40  
LINK        MG    MG A 401                 O   HOH A 803     1555   1555  2.10  
LINK        MG    MG A 402                 O   HOH A 587     1555   1555  2.14  
LINK        MG    MG A 402                 O   HOH A 665     1555   1555  2.37  
LINK        MG    MG A 402                 O   HOH A 781     1555   1555  2.08  
LINK        MG    MG A 402                 O   HOH A 850     1555   1555  2.50  
LINK        MG    MG A 403                 O   HOH A 662     1555   1555  2.68  
CISPEP   1 GLY A   76    PRO A   77          0        -3.86                     
SITE     1 AC1  5 THR A  64  THR A  66  HOH A 554  HOH A 607                    
SITE     2 AC1  5 HOH A 803                                                     
SITE     1 AC2  6 LEU A 280  ASN A 283  HOH A 587  HOH A 665                    
SITE     2 AC2  6 HOH A 781  HOH A 850                                          
SITE     1 AC3  6 LEU A 150  PHE A 308  VAL A 309  LYS A 310                    
SITE     2 AC3  6 HOH A 662  HOH A 829                                          
SITE     1 AC4  9 ILE A  54  MET A  79  ASP A  80  LEU A  86                    
SITE     2 AC4  9 ILE A 213  GLU A 214  HOH A 509  HOH A 533                    
SITE     3 AC4  9 HOH A 563                                                     
SITE     1 AC5  3 UMA B   1  LYS B   3  HOH B 214                               
SITE     1 AC6 39 TRP A  32  LYS A  36  ASN A  38  TRP A  39                    
SITE     2 AC6 39 PHE A  70  ASP A  85  TYR A 103  ARG A 106                    
SITE     3 AC6 39 ILE A 142  ILE A 208  THR A 209  ARG A 211                    
SITE     4 AC6 39 PRO A 212  TYR A 215  TYR A 256  HOH A 535                    
SITE     5 AC6 39 HOH A 667  ALA B 101  HOH B 201  HOH B 202                    
SITE     6 AC6 39 HOH B 203  HOH B 204  HOH B 205  HOH B 206                    
SITE     7 AC6 39 HOH B 207  HOH B 208  HOH B 209  HOH B 210                    
SITE     8 AC6 39 HOH B 211  HOH B 212  HOH B 213  HOH B 215                    
SITE     9 AC6 39 HOH B 216  HOH B 217  HOH B 218  HOH B 220                    
SITE    10 AC6 39 HOH B 221  HOH B 222  HOH B 223                               
CRYST1   42.324  101.836   46.847  90.00 102.85  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.023627  0.000000  0.005390        0.00000                         
SCALE2      0.000000  0.009820  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.021894        0.00000