data_3GKZ # _entry.id 3GKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GKZ RCSB RCSB051991 WWPDB D_1000051991 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3GM0 _pdbx_database_related.details 'Anti-methamphetamine single chain Fv in complex with MDMA' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GKZ _pdbx_database_status.recvd_initial_deposition_date 2009-03-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Celikel, R.' 1 'Peterson, E.C.' 2 'Owens, M.' 3 'Varughese, K.I.' 4 # _citation.id primary _citation.title ;Crystal structures of a therapeutic single chain antibody in complex with two drugs of abuse-Methamphetamine and 3,4-methylenedioxymethamphetamine. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 18 _citation.page_first 2336 _citation.page_last 2345 _citation.year 2009 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19760665 _citation.pdbx_database_id_DOI 10.1002/pro.244 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Celikel, R.' 1 ? primary 'Peterson, E.C.' 2 ? primary 'Owens, S.M.' 3 ? primary 'Varughese, K.I.' 4 ? # _cell.entry_id 3GKZ _cell.length_a 34.338 _cell.length_b 65.265 _cell.length_c 48.513 _cell.angle_alpha 90.00 _cell.angle_beta 98.75 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GKZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'anti-methamphetamine single chain Fv' 27789.309 1 ? ? ? ? 2 non-polymer syn '(2S)-N-methyl-1-phenylpropan-2-amine' 149.233 1 ? ? ? ? 3 water nat water 18.015 96 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DYKDDDDKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRD TSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVT LTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFG SGTKLEIKRAPHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;DYKDDDDKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRD TSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVT LTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFG SGTKLEIKRAPHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 TYR n 1 3 LYS n 1 4 ASP n 1 5 ASP n 1 6 ASP n 1 7 ASP n 1 8 LYS n 1 9 GLU n 1 10 VAL n 1 11 GLN n 1 12 LEU n 1 13 GLN n 1 14 GLU n 1 15 SER n 1 16 GLY n 1 17 PRO n 1 18 SER n 1 19 LEU n 1 20 VAL n 1 21 LYS n 1 22 PRO n 1 23 SER n 1 24 GLN n 1 25 THR n 1 26 LEU n 1 27 SER n 1 28 LEU n 1 29 THR n 1 30 CYS n 1 31 SER n 1 32 VAL n 1 33 THR n 1 34 GLY n 1 35 ASP n 1 36 SER n 1 37 VAL n 1 38 THR n 1 39 SER n 1 40 GLY n 1 41 TYR n 1 42 TRP n 1 43 SER n 1 44 TRP n 1 45 ILE n 1 46 ARG n 1 47 GLN n 1 48 PHE n 1 49 PRO n 1 50 GLY n 1 51 ASN n 1 52 LYS n 1 53 LEU n 1 54 ASP n 1 55 TYR n 1 56 MET n 1 57 GLY n 1 58 TYR n 1 59 ILE n 1 60 SER n 1 61 TYR n 1 62 ARG n 1 63 GLY n 1 64 SER n 1 65 THR n 1 66 TYR n 1 67 TYR n 1 68 ASN n 1 69 PRO n 1 70 SER n 1 71 LEU n 1 72 LYS n 1 73 SER n 1 74 ARG n 1 75 ILE n 1 76 SER n 1 77 ILE n 1 78 THR n 1 79 ARG n 1 80 ASP n 1 81 THR n 1 82 SER n 1 83 LYS n 1 84 ASN n 1 85 GLN n 1 86 VAL n 1 87 TYR n 1 88 LEU n 1 89 GLN n 1 90 LEU n 1 91 LYS n 1 92 SER n 1 93 VAL n 1 94 SER n 1 95 SER n 1 96 GLU n 1 97 ASP n 1 98 THR n 1 99 ALA n 1 100 THR n 1 101 TYR n 1 102 TYR n 1 103 CYS n 1 104 SER n 1 105 TYR n 1 106 PHE n 1 107 ASP n 1 108 SER n 1 109 ASP n 1 110 ASP n 1 111 TYR n 1 112 ALA n 1 113 MET n 1 114 GLU n 1 115 TYR n 1 116 TRP n 1 117 GLY n 1 118 GLN n 1 119 GLY n 1 120 THR n 1 121 SER n 1 122 VAL n 1 123 THR n 1 124 VAL n 1 125 SER n 1 126 GLY n 1 127 GLY n 1 128 GLY n 1 129 GLY n 1 130 SER n 1 131 GLY n 1 132 GLY n 1 133 GLY n 1 134 GLY n 1 135 SER n 1 136 GLY n 1 137 GLY n 1 138 GLY n 1 139 GLY n 1 140 SER n 1 141 GLN n 1 142 ILE n 1 143 VAL n 1 144 LEU n 1 145 THR n 1 146 GLN n 1 147 SER n 1 148 PRO n 1 149 ALA n 1 150 ILE n 1 151 MET n 1 152 SER n 1 153 ALA n 1 154 SER n 1 155 PRO n 1 156 GLY n 1 157 GLU n 1 158 LYS n 1 159 VAL n 1 160 THR n 1 161 LEU n 1 162 THR n 1 163 CYS n 1 164 SER n 1 165 ALA n 1 166 SER n 1 167 SER n 1 168 SER n 1 169 VAL n 1 170 SER n 1 171 SER n 1 172 SER n 1 173 HIS n 1 174 LEU n 1 175 TYR n 1 176 TRP n 1 177 TYR n 1 178 GLN n 1 179 GLN n 1 180 LYS n 1 181 PRO n 1 182 GLY n 1 183 SER n 1 184 SER n 1 185 PRO n 1 186 LYS n 1 187 LEU n 1 188 TRP n 1 189 ILE n 1 190 TYR n 1 191 SER n 1 192 THR n 1 193 SER n 1 194 ASN n 1 195 LEU n 1 196 ALA n 1 197 SER n 1 198 GLY n 1 199 VAL n 1 200 PRO n 1 201 ALA n 1 202 ARG n 1 203 PHE n 1 204 SER n 1 205 GLY n 1 206 SER n 1 207 GLY n 1 208 SER n 1 209 GLY n 1 210 THR n 1 211 SER n 1 212 TYR n 1 213 SER n 1 214 LEU n 1 215 THR n 1 216 ILE n 1 217 SER n 1 218 SER n 1 219 MET n 1 220 GLU n 1 221 ALA n 1 222 GLU n 1 223 ASP n 1 224 ALA n 1 225 ALA n 1 226 SER n 1 227 TYR n 1 228 PHE n 1 229 CYS n 1 230 HIS n 1 231 GLN n 1 232 TRP n 1 233 SER n 1 234 SER n 1 235 PHE n 1 236 PRO n 1 237 PHE n 1 238 THR n 1 239 PHE n 1 240 GLY n 1 241 SER n 1 242 GLY n 1 243 THR n 1 244 LYS n 1 245 LEU n 1 246 GLU n 1 247 ILE n 1 248 LYS n 1 249 ARG n 1 250 ALA n 1 251 PRO n 1 252 HIS n 1 253 HIS n 1 254 HIS n 1 255 HIS n 1 256 HIS n 1 257 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene IgG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain KM71H _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPICZ-alpha _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GKZ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DYKDDDDKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRD TSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVT LTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFG SGTKLEIKRAPHHHHHH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 3GKZ _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GKZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 257 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3GKZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 257 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 257 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 B40 non-polymer . '(2S)-N-methyl-1-phenylpropan-2-amine' Methamphetamine 'C10 H15 N' 149.233 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GKZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_percent_sol 36.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 287 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '1.15M sidium citrate, 0.28M imidazole malate, pH 8.0, VAPOR DIFFUSION, temperature 287K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-01-17 _diffrn_detector.details 'single crystal bent monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal bent monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97946 # _reflns.entry_id 3GKZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 38.64 _reflns.d_resolution_high 1.9 _reflns.number_obs ? _reflns.number_all 16710 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 33.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 89.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.188 _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1470 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 3GKZ _refine.ls_number_reflns_obs 16519 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 84552.39 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.64 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.210 _refine.ls_R_factor_R_free 0.235 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.9 _refine.ls_number_reflns_R_free 1142 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.8 _refine.aniso_B[1][1] 6.44 _refine.aniso_B[2][2] -5.05 _refine.aniso_B[3][3] -1.39 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.82 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 47.5645 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GKZ _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1781 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 1888 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 38.64 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.71 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.37 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.22 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.99 2.50 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs . 1.90 2.03 2386 0.242 92.7 0.268 0.020 6.9 178 . . 3092 . 'X-RAY DIFFRACTION' . . 2.03 2.16 . 0.215 . 0.280 . . 151 . . 2216 . 'X-RAY DIFFRACTION' . . 2.16 2.32 . 0.209 . 0.245 . . 148 . . 2285 . 'X-RAY DIFFRACTION' . . 2.32 2.66 . 0.230 . 0.256 . . 218 . . 3034 . 'X-RAY DIFFRACTION' . . 2.66 3.34 . 0.222 . 0.269 . . 202 . . 3010 . 'X-RAY DIFFRACTION' . . 3.34 15.0 . 0.191 . 0.1935 . . 221 . . 3095 . 'X-RAY DIFFRACTION' . # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water.param ? 'X-RAY DIFFRACTION' 3 meth.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3GKZ _struct.title 'Crystal structures of a therapeutic single chain antibody in complex methamphetamine' _struct.pdbx_descriptor 'anti-methamphetamine single chain Fv' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GKZ _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Therapeutic antibody, Methamphetamine, amphetamine, MDMA, IgG, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 81 ? LYS A 83 ? THR A 81 LYS A 83 5 ? 3 HELX_P HELX_P2 2 SER A 94 ? THR A 98 ? SER A 94 THR A 98 5 ? 5 HELX_P HELX_P3 3 SER A 170 ? SER A 172 ? SER A 170 SER A 172 5 ? 3 HELX_P HELX_P4 4 GLU A 220 ? ALA A 224 ? GLU A 220 ALA A 224 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 30 A CYS 103 1_555 ? ? ? ? ? ? ? 2.039 ? disulf2 disulf ? ? A CYS 163 SG ? ? ? 1_555 A CYS 229 SG ? ? A CYS 163 A CYS 229 1_555 ? ? ? ? ? ? ? 2.045 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 147 A . ? SER 147 A PRO 148 A ? PRO 148 A 1 -0.06 2 PHE 235 A . ? PHE 235 A PRO 236 A ? PRO 236 A 1 -0.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 6 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? SER A 15 ? VAL A 10 SER A 15 A 2 LEU A 26 ? GLY A 34 ? LEU A 26 GLY A 34 A 3 GLN A 85 ? LEU A 90 ? GLN A 85 LEU A 90 A 4 ILE A 75 ? ASP A 80 ? ILE A 75 ASP A 80 B 1 LEU A 19 ? VAL A 20 ? LEU A 19 VAL A 20 B 2 THR A 120 ? VAL A 124 ? THR A 120 VAL A 124 B 3 ALA A 99 ? PHE A 106 ? ALA A 99 PHE A 106 B 4 TYR A 41 ? GLN A 47 ? TYR A 41 GLN A 47 B 5 LEU A 53 ? SER A 60 ? LEU A 53 SER A 60 B 6 THR A 65 ? TYR A 67 ? THR A 65 TYR A 67 C 1 LEU A 19 ? VAL A 20 ? LEU A 19 VAL A 20 C 2 THR A 120 ? VAL A 124 ? THR A 120 VAL A 124 C 3 ALA A 99 ? PHE A 106 ? ALA A 99 PHE A 106 C 4 GLU A 114 ? TRP A 116 ? GLU A 114 TRP A 116 D 1 LEU A 144 ? THR A 145 ? LEU A 144 THR A 145 D 2 VAL A 159 ? ALA A 165 ? VAL A 159 ALA A 165 D 3 SER A 211 ? ILE A 216 ? SER A 211 ILE A 216 D 4 PHE A 203 ? SER A 208 ? PHE A 203 SER A 208 E 1 ILE A 150 ? ALA A 153 ? ILE A 150 ALA A 153 E 2 THR A 243 ? ILE A 247 ? THR A 243 ILE A 247 E 3 ALA A 225 ? GLN A 231 ? ALA A 225 GLN A 231 E 4 LEU A 174 ? GLN A 179 ? LEU A 174 GLN A 179 E 5 LYS A 186 ? TYR A 190 ? LYS A 186 TYR A 190 E 6 ASN A 194 ? LEU A 195 ? ASN A 194 LEU A 195 F 1 ILE A 150 ? ALA A 153 ? ILE A 150 ALA A 153 F 2 THR A 243 ? ILE A 247 ? THR A 243 ILE A 247 F 3 ALA A 225 ? GLN A 231 ? ALA A 225 GLN A 231 F 4 THR A 238 ? PHE A 239 ? THR A 238 PHE A 239 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 11 ? N GLN A 11 O THR A 33 ? O THR A 33 A 2 3 N LEU A 26 ? N LEU A 26 O LEU A 90 ? O LEU A 90 A 3 4 O TYR A 87 ? O TYR A 87 N THR A 78 ? N THR A 78 B 1 2 N VAL A 20 ? N VAL A 20 O THR A 123 ? O THR A 123 B 2 3 O THR A 120 ? O THR A 120 N TYR A 101 ? N TYR A 101 B 3 4 O TYR A 102 ? O TYR A 102 N ILE A 45 ? N ILE A 45 B 4 5 N ARG A 46 ? N ARG A 46 O ASP A 54 ? O ASP A 54 B 5 6 N TYR A 58 ? N TYR A 58 O TYR A 66 ? O TYR A 66 C 1 2 N VAL A 20 ? N VAL A 20 O THR A 123 ? O THR A 123 C 2 3 O THR A 120 ? O THR A 120 N TYR A 101 ? N TYR A 101 C 3 4 N TYR A 105 ? N TYR A 105 O TYR A 115 ? O TYR A 115 D 1 2 N THR A 145 ? N THR A 145 O SER A 164 ? O SER A 164 D 2 3 N LEU A 161 ? N LEU A 161 O LEU A 214 ? O LEU A 214 D 3 4 O SER A 213 ? O SER A 213 N SER A 206 ? N SER A 206 E 1 2 N MET A 151 ? N MET A 151 O GLU A 246 ? O GLU A 246 E 2 3 O LEU A 245 ? O LEU A 245 N ALA A 225 ? N ALA A 225 E 3 4 O HIS A 230 ? O HIS A 230 N TYR A 175 ? N TYR A 175 E 4 5 N TRP A 176 ? N TRP A 176 O TRP A 188 ? O TRP A 188 E 5 6 N TYR A 190 ? N TYR A 190 O ASN A 194 ? O ASN A 194 F 1 2 N MET A 151 ? N MET A 151 O GLU A 246 ? O GLU A 246 F 2 3 O LEU A 245 ? O LEU A 245 N ALA A 225 ? N ALA A 225 F 3 4 N GLN A 231 ? N GLN A 231 O THR A 238 ? O THR A 238 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE B40 A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TYR A 41 ? TYR A 41 . ? 1_555 ? 2 AC1 10 SER A 43 ? SER A 43 . ? 1_555 ? 3 AC1 10 TYR A 55 ? TYR A 55 . ? 1_555 ? 4 AC1 10 TYR A 58 ? TYR A 58 . ? 1_555 ? 5 AC1 10 PHE A 106 ? PHE A 106 . ? 1_555 ? 6 AC1 10 GLU A 114 ? GLU A 114 . ? 1_555 ? 7 AC1 10 TYR A 177 ? TYR A 177 . ? 1_555 ? 8 AC1 10 HIS A 230 ? HIS A 230 . ? 1_555 ? 9 AC1 10 TRP A 232 ? TRP A 232 . ? 1_555 ? 10 AC1 10 PHE A 237 ? PHE A 237 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GKZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GKZ _atom_sites.fract_transf_matrix[1][1] 0.029122 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004482 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015322 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020856 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? A . n A 1 2 TYR 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 ASP 6 6 ? ? ? A . n A 1 7 ASP 7 7 ? ? ? A . n A 1 8 LYS 8 8 ? ? ? A . n A 1 9 GLU 9 9 1 GLU GLU A . n A 1 10 VAL 10 10 2 VAL VAL A . n A 1 11 GLN 11 11 3 GLN GLN A . n A 1 12 LEU 12 12 4 LEU LEU A . n A 1 13 GLN 13 13 5 GLN GLN A . n A 1 14 GLU 14 14 6 GLU GLU A . n A 1 15 SER 15 15 7 SER SER A . n A 1 16 GLY 16 16 8 GLY GLY A . n A 1 17 PRO 17 17 9 PRO PRO A . n A 1 18 SER 18 18 10 SER SER A . n A 1 19 LEU 19 19 11 LEU LEU A . n A 1 20 VAL 20 20 12 VAL VAL A . n A 1 21 LYS 21 21 13 LYS LYS A . n A 1 22 PRO 22 22 14 PRO PRO A . n A 1 23 SER 23 23 15 SER SER A . n A 1 24 GLN 24 24 16 GLN GLN A . n A 1 25 THR 25 25 17 THR THR A . n A 1 26 LEU 26 26 18 LEU LEU A . n A 1 27 SER 27 27 19 SER SER A . n A 1 28 LEU 28 28 20 LEU LEU A . n A 1 29 THR 29 29 21 THR THR A . n A 1 30 CYS 30 30 22 CYS CYS A . n A 1 31 SER 31 31 23 SER SER A . n A 1 32 VAL 32 32 24 VAL VAL A . n A 1 33 THR 33 33 25 THR THR A . n A 1 34 GLY 34 34 26 GLY GLY A . n A 1 35 ASP 35 35 27 ASP ASP A . n A 1 36 SER 36 36 28 SER SER A . n A 1 37 VAL 37 37 29 VAL VAL A . n A 1 38 THR 38 38 30 THR THR A . n A 1 39 SER 39 39 31 SER SER A . n A 1 40 GLY 40 40 32 GLY GLY A . n A 1 41 TYR 41 41 33 TYR TYR A . n A 1 42 TRP 42 42 34 TRP TRP A . n A 1 43 SER 43 43 35 SER SER A . n A 1 44 TRP 44 44 36 TRP TRP A . n A 1 45 ILE 45 45 37 ILE ILE A . n A 1 46 ARG 46 46 38 ARG ARG A . n A 1 47 GLN 47 47 39 GLN GLN A . n A 1 48 PHE 48 48 40 PHE PHE A . n A 1 49 PRO 49 49 41 PRO PRO A . n A 1 50 GLY 50 50 42 GLY GLY A . n A 1 51 ASN 51 51 43 ASN ASN A . n A 1 52 LYS 52 52 44 LYS LYS A . n A 1 53 LEU 53 53 45 LEU LEU A . n A 1 54 ASP 54 54 46 ASP ASP A . n A 1 55 TYR 55 55 47 TYR TYR A . n A 1 56 MET 56 56 48 MET MET A . n A 1 57 GLY 57 57 49 GLY GLY A . n A 1 58 TYR 58 58 50 TYR TYR A . n A 1 59 ILE 59 59 51 ILE ILE A . n A 1 60 SER 60 60 52 SER SER A . n A 1 61 TYR 61 61 53 TYR TYR A . n A 1 62 ARG 62 62 54 ARG ARG A . n A 1 63 GLY 63 63 55 GLY GLY A . n A 1 64 SER 64 64 56 SER SER A . n A 1 65 THR 65 65 57 THR THR A . n A 1 66 TYR 66 66 58 TYR TYR A . n A 1 67 TYR 67 67 59 TYR TYR A . n A 1 68 ASN 68 68 60 ASN ASN A . n A 1 69 PRO 69 69 61 PRO PRO A . n A 1 70 SER 70 70 62 SER SER A . n A 1 71 LEU 71 71 63 LEU LEU A . n A 1 72 LYS 72 72 64 LYS LYS A . n A 1 73 SER 73 73 65 SER SER A . n A 1 74 ARG 74 74 66 ARG ARG A . n A 1 75 ILE 75 75 67 ILE ILE A . n A 1 76 SER 76 76 68 SER SER A . n A 1 77 ILE 77 77 69 ILE ILE A . n A 1 78 THR 78 78 70 THR THR A . n A 1 79 ARG 79 79 71 ARG ARG A . n A 1 80 ASP 80 80 72 ASP ASP A . n A 1 81 THR 81 81 73 THR THR A . n A 1 82 SER 82 82 74 SER SER A . n A 1 83 LYS 83 83 75 LYS LYS A . n A 1 84 ASN 84 84 76 ASN ASN A . n A 1 85 GLN 85 85 77 GLN GLN A . n A 1 86 VAL 86 86 78 VAL VAL A . n A 1 87 TYR 87 87 79 TYR TYR A . n A 1 88 LEU 88 88 80 LEU LEU A . n A 1 89 GLN 89 89 81 GLN GLN A . n A 1 90 LEU 90 90 82 LEU LEU A . n A 1 91 LYS 91 91 82 LYS LYS A . n A 1 92 SER 92 92 82 SER SER A . n A 1 93 VAL 93 93 82 VAL VAL A . n A 1 94 SER 94 94 83 SER SER A . n A 1 95 SER 95 95 84 SER SER A . n A 1 96 GLU 96 96 85 GLU GLU A . n A 1 97 ASP 97 97 86 ASP ASP A . n A 1 98 THR 98 98 87 THR THR A . n A 1 99 ALA 99 99 88 ALA ALA A . n A 1 100 THR 100 100 89 THR THR A . n A 1 101 TYR 101 101 90 TYR TYR A . n A 1 102 TYR 102 102 91 TYR TYR A . n A 1 103 CYS 103 103 92 CYS CYS A . n A 1 104 SER 104 104 93 SER SER A . n A 1 105 TYR 105 105 94 TYR TYR A . n A 1 106 PHE 106 106 95 PHE PHE A . n A 1 107 ASP 107 107 96 ASP ASP A . n A 1 108 SER 108 108 97 SER SER A . n A 1 109 ASP 109 109 98 ASP ASP A . n A 1 110 ASP 110 110 99 ASP ASP A . n A 1 111 TYR 111 111 100 TYR TYR A . n A 1 112 ALA 112 112 100 ALA ALA A . n A 1 113 MET 113 113 100 MET MET A . n A 1 114 GLU 114 114 101 GLU GLU A . n A 1 115 TYR 115 115 102 TYR TYR A . n A 1 116 TRP 116 116 103 TRP TRP A . n A 1 117 GLY 117 117 104 GLY GLY A . n A 1 118 GLN 118 118 105 GLN GLN A . n A 1 119 GLY 119 119 106 GLY GLY A . n A 1 120 THR 120 120 107 THR THR A . n A 1 121 SER 121 121 108 SER SER A . n A 1 122 VAL 122 122 109 VAL VAL A . n A 1 123 THR 123 123 110 THR THR A . n A 1 124 VAL 124 124 111 VAL VAL A . n A 1 125 SER 125 125 112 SER SER A . n A 1 126 GLY 126 126 ? ? ? A . n A 1 127 GLY 127 127 ? ? ? A . n A 1 128 GLY 128 128 ? ? ? A . n A 1 129 GLY 129 129 ? ? ? A . n A 1 130 SER 130 130 ? ? ? A . n A 1 131 GLY 131 131 ? ? ? A . n A 1 132 GLY 132 132 ? ? ? A . n A 1 133 GLY 133 133 ? ? ? A . n A 1 134 GLY 134 134 ? ? ? A . n A 1 135 SER 135 135 1 SER SER A . n A 1 136 GLY 136 136 1 GLY GLY A . n A 1 137 GLY 137 137 1 GLY GLY A . n A 1 138 GLY 138 138 1 GLY GLY A . n A 1 139 GLY 139 139 1 GLY GLY A . n A 1 140 SER 140 140 1 SER SER A . n A 1 141 GLN 141 141 1 GLN GLN A . n A 1 142 ILE 142 142 2 ILE ILE A . n A 1 143 VAL 143 143 3 VAL VAL A . n A 1 144 LEU 144 144 4 LEU LEU A . n A 1 145 THR 145 145 5 THR THR A . n A 1 146 GLN 146 146 6 GLN GLN A . n A 1 147 SER 147 147 7 SER SER A . n A 1 148 PRO 148 148 8 PRO PRO A . n A 1 149 ALA 149 149 9 ALA ALA A . n A 1 150 ILE 150 150 10 ILE ILE A . n A 1 151 MET 151 151 11 MET MET A . n A 1 152 SER 152 152 12 SER SER A . n A 1 153 ALA 153 153 13 ALA ALA A . n A 1 154 SER 154 154 14 SER SER A . n A 1 155 PRO 155 155 15 PRO PRO A . n A 1 156 GLY 156 156 16 GLY GLY A . n A 1 157 GLU 157 157 17 GLU GLU A . n A 1 158 LYS 158 158 18 LYS LYS A . n A 1 159 VAL 159 159 19 VAL VAL A . n A 1 160 THR 160 160 20 THR THR A . n A 1 161 LEU 161 161 21 LEU LEU A . n A 1 162 THR 162 162 22 THR THR A . n A 1 163 CYS 163 163 23 CYS CYS A . n A 1 164 SER 164 164 24 SER SER A . n A 1 165 ALA 165 165 25 ALA ALA A . n A 1 166 SER 166 166 26 SER SER A . n A 1 167 SER 167 167 27 SER SER A . n A 1 168 SER 168 168 27 SER SER A . n A 1 169 VAL 169 169 28 VAL VAL A . n A 1 170 SER 170 170 29 SER SER A . n A 1 171 SER 171 171 30 SER SER A . n A 1 172 SER 172 172 31 SER SER A . n A 1 173 HIS 173 173 32 HIS HIS A . n A 1 174 LEU 174 174 33 LEU LEU A . n A 1 175 TYR 175 175 34 TYR TYR A . n A 1 176 TRP 176 176 35 TRP TRP A . n A 1 177 TYR 177 177 36 TYR TYR A . n A 1 178 GLN 178 178 37 GLN GLN A . n A 1 179 GLN 179 179 38 GLN GLN A . n A 1 180 LYS 180 180 39 LYS LYS A . n A 1 181 PRO 181 181 40 PRO PRO A . n A 1 182 GLY 182 182 41 GLY GLY A . n A 1 183 SER 183 183 42 SER SER A . n A 1 184 SER 184 184 43 SER SER A . n A 1 185 PRO 185 185 44 PRO PRO A . n A 1 186 LYS 186 186 45 LYS LYS A . n A 1 187 LEU 187 187 46 LEU LEU A . n A 1 188 TRP 188 188 47 TRP TRP A . n A 1 189 ILE 189 189 48 ILE ILE A . n A 1 190 TYR 190 190 49 TYR TYR A . n A 1 191 SER 191 191 50 SER SER A . n A 1 192 THR 192 192 51 THR THR A . n A 1 193 SER 193 193 52 SER SER A . n A 1 194 ASN 194 194 53 ASN ASN A . n A 1 195 LEU 195 195 54 LEU LEU A . n A 1 196 ALA 196 196 55 ALA ALA A . n A 1 197 SER 197 197 56 SER SER A . n A 1 198 GLY 198 198 57 GLY GLY A . n A 1 199 VAL 199 199 58 VAL VAL A . n A 1 200 PRO 200 200 59 PRO PRO A . n A 1 201 ALA 201 201 60 ALA ALA A . n A 1 202 ARG 202 202 61 ARG ARG A . n A 1 203 PHE 203 203 62 PHE PHE A . n A 1 204 SER 204 204 63 SER SER A . n A 1 205 GLY 205 205 64 GLY GLY A . n A 1 206 SER 206 206 65 SER SER A . n A 1 207 GLY 207 207 66 GLY GLY A . n A 1 208 SER 208 208 67 SER SER A . n A 1 209 GLY 209 209 68 GLY GLY A . n A 1 210 THR 210 210 69 THR THR A . n A 1 211 SER 211 211 70 SER SER A . n A 1 212 TYR 212 212 71 TYR TYR A . n A 1 213 SER 213 213 72 SER SER A . n A 1 214 LEU 214 214 73 LEU LEU A . n A 1 215 THR 215 215 74 THR THR A . n A 1 216 ILE 216 216 75 ILE ILE A . n A 1 217 SER 217 217 76 SER SER A . n A 1 218 SER 218 218 77 SER SER A . n A 1 219 MET 219 219 78 MET MET A . n A 1 220 GLU 220 220 79 GLU GLU A . n A 1 221 ALA 221 221 80 ALA ALA A . n A 1 222 GLU 222 222 81 GLU GLU A . n A 1 223 ASP 223 223 82 ASP ASP A . n A 1 224 ALA 224 224 83 ALA ALA A . n A 1 225 ALA 225 225 84 ALA ALA A . n A 1 226 SER 226 226 85 SER SER A . n A 1 227 TYR 227 227 86 TYR TYR A . n A 1 228 PHE 228 228 87 PHE PHE A . n A 1 229 CYS 229 229 88 CYS CYS A . n A 1 230 HIS 230 230 89 HIS HIS A . n A 1 231 GLN 231 231 90 GLN GLN A . n A 1 232 TRP 232 232 91 TRP TRP A . n A 1 233 SER 233 233 92 SER SER A . n A 1 234 SER 234 234 93 SER SER A . n A 1 235 PHE 235 235 94 PHE PHE A . n A 1 236 PRO 236 236 95 PRO PRO A . n A 1 237 PHE 237 237 96 PHE PHE A . n A 1 238 THR 238 238 97 THR THR A . n A 1 239 PHE 239 239 98 PHE PHE A . n A 1 240 GLY 240 240 99 GLY GLY A . n A 1 241 SER 241 241 100 SER SER A . n A 1 242 GLY 242 242 101 GLY GLY A . n A 1 243 THR 243 243 102 THR THR A . n A 1 244 LYS 244 244 103 LYS LYS A . n A 1 245 LEU 245 245 104 LEU LEU A . n A 1 246 GLU 246 246 105 GLU GLU A . n A 1 247 ILE 247 247 106 ILE ILE A . n A 1 248 LYS 248 248 106 LYS LYS A . n A 1 249 ARG 249 249 107 ARG ARG A . n A 1 250 ALA 250 250 108 ALA ALA A . n A 1 251 PRO 251 251 ? ? ? A . n A 1 252 HIS 252 252 ? ? ? A . n A 1 253 HIS 253 253 ? ? ? A . n A 1 254 HIS 254 254 ? ? ? A . n A 1 255 HIS 255 255 ? ? ? A . n A 1 256 HIS 256 256 ? ? ? A . n A 1 257 HIS 257 257 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B40 1 500 500 B40 B40 A . C 3 HOH 1 501 1 HOH HOH A . C 3 HOH 2 502 2 HOH HOH A . C 3 HOH 3 503 3 HOH HOH A . C 3 HOH 4 504 4 HOH HOH A . C 3 HOH 5 505 5 HOH HOH A . C 3 HOH 6 506 6 HOH HOH A . C 3 HOH 7 507 7 HOH HOH A . C 3 HOH 8 508 8 HOH HOH A . C 3 HOH 9 509 9 HOH HOH A . C 3 HOH 10 510 10 HOH HOH A . C 3 HOH 11 511 11 HOH HOH A . C 3 HOH 12 512 12 HOH HOH A . C 3 HOH 13 513 13 HOH HOH A . C 3 HOH 14 514 14 HOH HOH A . C 3 HOH 15 515 15 HOH HOH A . C 3 HOH 16 516 16 HOH HOH A . C 3 HOH 17 517 17 HOH HOH A . C 3 HOH 18 518 18 HOH HOH A . C 3 HOH 19 519 19 HOH HOH A . C 3 HOH 20 520 20 HOH HOH A . C 3 HOH 21 521 21 HOH HOH A . C 3 HOH 22 522 22 HOH HOH A . C 3 HOH 23 523 23 HOH HOH A . C 3 HOH 24 524 24 HOH HOH A . C 3 HOH 25 525 25 HOH HOH A . C 3 HOH 26 526 26 HOH HOH A . C 3 HOH 27 527 27 HOH HOH A . C 3 HOH 28 528 28 HOH HOH A . C 3 HOH 29 529 29 HOH HOH A . C 3 HOH 30 530 30 HOH HOH A . C 3 HOH 31 531 31 HOH HOH A . C 3 HOH 32 532 32 HOH HOH A . C 3 HOH 33 533 33 HOH HOH A . C 3 HOH 34 534 34 HOH HOH A . C 3 HOH 35 535 35 HOH HOH A . C 3 HOH 36 536 36 HOH HOH A . C 3 HOH 37 537 37 HOH HOH A . C 3 HOH 38 538 38 HOH HOH A . C 3 HOH 39 539 39 HOH HOH A . C 3 HOH 40 540 40 HOH HOH A . C 3 HOH 41 541 41 HOH HOH A . C 3 HOH 42 542 42 HOH HOH A . C 3 HOH 43 543 43 HOH HOH A . C 3 HOH 44 544 44 HOH HOH A . C 3 HOH 45 545 45 HOH HOH A . C 3 HOH 46 546 46 HOH HOH A . C 3 HOH 47 547 47 HOH HOH A . C 3 HOH 48 548 48 HOH HOH A . C 3 HOH 49 549 49 HOH HOH A . C 3 HOH 50 550 50 HOH HOH A . C 3 HOH 51 551 51 HOH HOH A . C 3 HOH 52 552 52 HOH HOH A . C 3 HOH 53 553 53 HOH HOH A . C 3 HOH 54 554 54 HOH HOH A . C 3 HOH 55 555 55 HOH HOH A . C 3 HOH 56 556 56 HOH HOH A . C 3 HOH 57 557 57 HOH HOH A . C 3 HOH 58 558 58 HOH HOH A . C 3 HOH 59 559 59 HOH HOH A . C 3 HOH 60 560 60 HOH HOH A . C 3 HOH 61 561 61 HOH HOH A . C 3 HOH 62 562 62 HOH HOH A . C 3 HOH 63 563 63 HOH HOH A . C 3 HOH 64 564 64 HOH HOH A . C 3 HOH 65 565 65 HOH HOH A . C 3 HOH 66 566 66 HOH HOH A . C 3 HOH 67 567 67 HOH HOH A . C 3 HOH 68 568 68 HOH HOH A . C 3 HOH 69 569 69 HOH HOH A . C 3 HOH 70 570 70 HOH HOH A . C 3 HOH 71 571 71 HOH HOH A . C 3 HOH 72 572 72 HOH HOH A . C 3 HOH 73 573 73 HOH HOH A . C 3 HOH 74 574 74 HOH HOH A . C 3 HOH 75 575 75 HOH HOH A . C 3 HOH 76 576 76 HOH HOH A . C 3 HOH 77 577 77 HOH HOH A . C 3 HOH 78 578 78 HOH HOH A . C 3 HOH 79 579 79 HOH HOH A . C 3 HOH 80 580 80 HOH HOH A . C 3 HOH 81 581 81 HOH HOH A . C 3 HOH 82 582 82 HOH HOH A . C 3 HOH 83 583 83 HOH HOH A . C 3 HOH 84 584 84 HOH HOH A . C 3 HOH 85 585 85 HOH HOH A . C 3 HOH 86 586 86 HOH HOH A . C 3 HOH 87 587 87 HOH HOH A . C 3 HOH 88 588 88 HOH HOH A . C 3 HOH 89 589 89 HOH HOH A . C 3 HOH 90 590 90 HOH HOH A . C 3 HOH 91 591 91 HOH HOH A . C 3 HOH 92 592 92 HOH HOH A . C 3 HOH 93 593 93 HOH HOH A . C 3 HOH 94 594 94 HOH HOH A . C 3 HOH 95 595 95 HOH HOH A . C 3 HOH 96 596 96 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category refine_ls_shell # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_refine_ls_shell.R_factor_R_free' 2 3 'Structure model' '_refine_ls_shell.R_factor_R_work' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_entry_details.entry_id 3GKZ _pdbx_entry_details.sequence_details ;THE PROTEIN WAS CRYSTALLIZED AS A FUSION PROTEIN WHERE TWO CHAINS, CHAIN H AND CHAIN L, WERE FUSED TOGETHER INTO ONE CHAIN USING A 15-RESIDUE LINKER. THE SEQUENCE OF THE LINKER IS: GGGGS GGGGS GGGGS. IN ADDITION, THERE IS A FLAG EPITOPE AT THE N-TERMINAL AND THERE IS A HIS-TAG AT THE C-TERMINAL. PLEASE NOTE THAT THE AMINO ACID NUMBERING IN THIS PDB FILE A SEQUENTIAL NUMBERING OF THE SCFV6H4 SINGLE CHAIN ANTIBODY AMINO ACIDS DUE TO PDB POLICY. PLEASE SEE THE ORIGINAL MANUSCRIPT FOR THE MORE COMMON KABAT AMINO ACID NUMBERING SCHEME OF THE HEAVY AND LIGHT CHAIN RESIDUES. PLEASE USE THE CORRELATION PROVIDED BELOW FOR CONVERTING TO KABAT NUMBERING SCHEME USED IN OUR MANUSCRIPT. PDB NUMBER (PUBLICATION NUMBER): A9 (H1), A90 (H82), A91 (H82A), A92 (H82B), A93 (H82C), A94 (H93), A110 (H99), A111 (H100A), A112 (H100B), A113 (H100C), A114 (H101), A141 (L1), A167 (L27), A168 (L27A), A169 (L28), A247 (L106), A248 (L106A), A249 (L107), HOH 505 (OW(5)), HOH 506 (OW(6)) ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 23 ? ? 74.11 -12.72 2 1 SER A 39 ? ? -178.42 -174.19 3 1 LYS A 72 ? ? -13.18 -67.99 4 1 THR A 192 ? ? 70.58 -50.09 5 1 ALA A 225 ? ? 178.84 -175.33 6 1 ARG A 249 ? ? 86.50 107.49 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 1 ? A ASP 1 2 1 Y 1 A TYR 2 ? A TYR 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A ASP 6 ? A ASP 6 7 1 Y 1 A ASP 7 ? A ASP 7 8 1 Y 1 A LYS 8 ? A LYS 8 9 1 Y 1 A GLY 126 ? A GLY 126 10 1 Y 1 A GLY 127 ? A GLY 127 11 1 Y 1 A GLY 128 ? A GLY 128 12 1 Y 1 A GLY 129 ? A GLY 129 13 1 Y 1 A SER 130 ? A SER 130 14 1 Y 1 A GLY 131 ? A GLY 131 15 1 Y 1 A GLY 132 ? A GLY 132 16 1 Y 1 A GLY 133 ? A GLY 133 17 1 Y 1 A GLY 134 ? A GLY 134 18 1 Y 1 A PRO 251 ? A PRO 251 19 1 Y 1 A HIS 252 ? A HIS 252 20 1 Y 1 A HIS 253 ? A HIS 253 21 1 Y 1 A HIS 254 ? A HIS 254 22 1 Y 1 A HIS 255 ? A HIS 255 23 1 Y 1 A HIS 256 ? A HIS 256 24 1 Y 1 A HIS 257 ? A HIS 257 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2S)-N-methyl-1-phenylpropan-2-amine' B40 3 water HOH #