HEADER SIGNALING PROTEIN 11-MAR-09 3GL9 TITLE THE STRUCTURE OF A HISTIDINE KINASE-RESPONSE REGULATOR COMPLEX SHEDS TITLE 2 LIGHT INTO TWO-COMPONENT SIGNALING AND REVEALS A NOVEL CIS TITLE 3 AUTOPHOSPHORYLATION MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RESPONSE REGULATOR RR468; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS BETA-SHEET, SURROUNDED BY ALPHA HELICES, BOTH SIDES, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.CASINO,V.RUBIO,A.MARINA REVDAT 2 01-NOV-23 3GL9 1 REMARK LINK REVDAT 1 27-OCT-09 3GL9 0 JRNL AUTH P.CASINO,V.RUBIO,A.MARINA JRNL TITL STRUCTURAL INSIGHT INTO PARTNER SPECIFICITY AND PHOSPHORYL JRNL TITL 2 TRANSFER IN TWO-COMPONENT SIGNAL TRANSDUCTION JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 325 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19800110 JRNL DOI 10.1016/J.CELL.2009.08.032 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 2209 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 653 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3983 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5371 ; 1.214 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 5.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;41.804 ;25.641 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 836 ;15.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2798 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2196 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2759 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 549 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.036 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 172 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 74 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2546 ; 0.682 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3983 ; 1.079 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1606 ; 1.751 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1374 ; 2.901 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : HORIZ. FOC. BY SAGITTAL CURVED REMARK 200 2ND CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.33000 REMARK 200 FOR THE DATA SET : 7.0830 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : 0.33300 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.98800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.49400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.24100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 5.74700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 122 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 GLU C 122 REMARK 465 MET D 1 REMARK 465 GLU D 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 244 O HOH A 545 1.76 REMARK 500 O ARG D 15 O HOH D 629 1.88 REMARK 500 O ALA D 12 O HOH D 434 2.13 REMARK 500 N LYS D 16 O HOH D 434 2.14 REMARK 500 OE1 GLU D 89 O HOH D 628 2.15 REMARK 500 O ILE D 17 O HOH D 577 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 54 -61.81 -91.25 REMARK 500 VAL A 58 -56.52 69.08 REMARK 500 ILE B 54 -60.28 -93.65 REMARK 500 ILE B 54 -60.02 -94.00 REMARK 500 VAL B 58 -55.87 76.32 REMARK 500 ILE C 54 -60.17 -91.56 REMARK 500 VAL C 58 -59.35 70.41 REMARK 500 ILE D 54 -61.49 -91.69 REMARK 500 VAL D 58 -59.93 72.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 123 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 BFD A 53 OD2 86.3 REMARK 620 3 MET A 55 O 86.7 88.3 REMARK 620 4 HOH A 148 O 93.1 176.3 88.1 REMARK 620 5 HOH A 368 O 89.5 87.0 174.1 96.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 123 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 BFD B 53 OD2 88.5 REMARK 620 3 MET B 55 O 87.1 89.5 REMARK 620 4 HOH B 149 O 86.6 175.0 89.3 REMARK 620 5 HOH B 369 O 87.9 87.1 174.0 93.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 123 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD1 REMARK 620 2 BFD C 53 OD2 86.0 REMARK 620 3 MET C 55 O 85.2 90.2 REMARK 620 4 HOH C 166 O 91.3 177.2 89.7 REMARK 620 5 HOH C 194 O 90.2 87.4 174.9 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 123 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 BFD D 53 OD2 84.3 REMARK 620 3 MET D 55 O 85.1 91.4 REMARK 620 4 HOH D 157 O 90.2 88.8 175.3 REMARK 620 5 HOH D 174 O 86.8 171.0 87.1 91.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 125 DBREF 3GL9 A 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 DBREF 3GL9 B 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 DBREF 3GL9 C 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 DBREF 3GL9 D 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 SEQRES 1 A 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA VAL SEQRES 2 A 122 LEU ARG LYS ILE VAL SER PHE ASN LEU LYS LYS GLU GLY SEQRES 3 A 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 A 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 A 122 BFD ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 A 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 A 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 A 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 A 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 A 122 HIS LEU LEU ASN GLU SEQRES 1 B 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA VAL SEQRES 2 B 122 LEU ARG LYS ILE VAL SER PHE ASN LEU LYS LYS GLU GLY SEQRES 3 B 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 B 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 B 122 BFD ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 B 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 B 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 B 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 B 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 B 122 HIS LEU LEU ASN GLU SEQRES 1 C 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA VAL SEQRES 2 C 122 LEU ARG LYS ILE VAL SER PHE ASN LEU LYS LYS GLU GLY SEQRES 3 C 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 C 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 C 122 BFD ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 C 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 C 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 C 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 C 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 C 122 HIS LEU LEU ASN GLU SEQRES 1 D 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA VAL SEQRES 2 D 122 LEU ARG LYS ILE VAL SER PHE ASN LEU LYS LYS GLU GLY SEQRES 3 D 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 D 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 D 122 BFD ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 D 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 D 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 D 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 D 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 D 122 HIS LEU LEU ASN GLU MODRES 3GL9 BFD A 53 ASP ASPARTATE BERYLLIUM TRIFLUORIDE MODRES 3GL9 BFD B 53 ASP ASPARTATE BERYLLIUM TRIFLUORIDE MODRES 3GL9 BFD C 53 ASP ASPARTATE BERYLLIUM TRIFLUORIDE MODRES 3GL9 BFD D 53 ASP ASPARTATE BERYLLIUM TRIFLUORIDE HET BFD A 53 12 HET BFD B 53 12 HET BFD C 53 12 HET BFD D 53 12 HET MG A 123 1 HET SO4 A 124 5 HET MG B 123 1 HET SO4 B 124 5 HET MG C 123 1 HET SO4 C 124 5 HET MG D 123 1 HET SO4 D 124 5 HET SO4 D 125 5 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 1 BFD 4(C4 H6 BE F3 N O4 2-) FORMUL 5 MG 4(MG 2+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 14 HOH *653(H2 O) HELIX 1 1 SER A 11 GLU A 25 1 15 HELIX 2 2 ASN A 34 SER A 43 1 10 HELIX 3 3 ASP A 60 GLU A 70 1 11 HELIX 4 4 GLY A 87 LEU A 97 1 11 HELIX 5 5 SER A 108 ASN A 121 1 14 HELIX 6 6 SER B 11 GLU B 25 1 15 HELIX 7 7 ASN B 34 SER B 43 1 10 HELIX 8 8 ASP B 60 LYS B 71 1 12 HELIX 9 9 GLY B 87 LEU B 97 1 11 HELIX 10 10 SER B 108 ASN B 121 1 14 HELIX 11 11 SER C 11 LYS C 24 1 14 HELIX 12 12 ASN C 34 SER C 43 1 10 HELIX 13 13 ASP C 60 LYS C 71 1 12 HELIX 14 14 GLY C 87 LEU C 97 1 11 HELIX 15 15 SER C 108 ASN C 121 1 14 HELIX 16 16 SER D 11 GLU D 25 1 15 HELIX 17 17 ASN D 34 SER D 43 1 10 HELIX 18 18 ASP D 60 GLU D 70 1 11 HELIX 19 19 GLY D 87 LEU D 97 1 11 HELIX 20 20 SER D 108 LEU D 120 1 13 SHEET 1 A 5 GLU A 28 ALA A 32 0 SHEET 2 A 5 LYS A 4 VAL A 8 1 N LEU A 7 O ILE A 30 SHEET 3 A 5 LEU A 49 LEU A 52 1 O VAL A 51 N VAL A 8 SHEET 4 A 5 VAL A 79 THR A 83 1 O ILE A 80 N LEU A 52 SHEET 5 A 5 LYS A 101 ARG A 104 1 O MET A 103 N VAL A 81 SHEET 1 B 5 GLU B 28 ALA B 32 0 SHEET 2 B 5 LYS B 4 VAL B 8 1 N LEU B 7 O ILE B 30 SHEET 3 B 5 LEU B 49 LEU B 52 1 O VAL B 51 N VAL B 8 SHEET 4 B 5 VAL B 79 THR B 83 1 O ILE B 80 N LEU B 52 SHEET 5 B 5 LYS B 101 ARG B 104 1 O MET B 103 N VAL B 81 SHEET 1 C 5 GLU C 28 ALA C 32 0 SHEET 2 C 5 LYS C 4 VAL C 8 1 N LEU C 7 O ILE C 30 SHEET 3 C 5 LEU C 49 LEU C 52 1 O VAL C 51 N VAL C 8 SHEET 4 C 5 VAL C 79 THR C 83 1 O ILE C 80 N LEU C 52 SHEET 5 C 5 LYS C 101 ARG C 104 1 O MET C 103 N VAL C 81 SHEET 1 D 5 GLU D 28 ALA D 32 0 SHEET 2 D 5 LYS D 4 VAL D 8 1 N LEU D 7 O ILE D 30 SHEET 3 D 5 LEU D 49 LEU D 52 1 O VAL D 51 N VAL D 8 SHEET 4 D 5 VAL D 79 THR D 83 1 O ILE D 80 N LEU D 52 SHEET 5 D 5 LYS D 101 ARG D 104 1 O MET D 103 N VAL D 81 LINK C LEU A 52 N BFD A 53 1555 1555 1.33 LINK C BFD A 53 N ILE A 54 1555 1555 1.33 LINK C LEU B 52 N BFD B 53 1555 1555 1.33 LINK C BFD B 53 N ILE B 54 1555 1555 1.34 LINK C LEU C 52 N BFD C 53 1555 1555 1.33 LINK C BFD C 53 N ILE C 54 1555 1555 1.34 LINK C LEU D 52 N BFD D 53 1555 1555 1.32 LINK C BFD D 53 N ILE D 54 1555 1555 1.33 LINK OD1 ASP A 10 MG MG A 123 1555 1555 2.07 LINK OD2 BFD A 53 MG MG A 123 1555 1555 2.13 LINK O MET A 55 MG MG A 123 1555 1555 2.17 LINK MG MG A 123 O HOH A 148 1555 1555 2.00 LINK MG MG A 123 O HOH A 368 1555 1555 2.13 LINK OD1 ASP B 10 MG MG B 123 1555 1555 2.10 LINK OD2 BFD B 53 MG MG B 123 1555 1555 2.05 LINK O MET B 55 MG MG B 123 1555 1555 2.04 LINK MG MG B 123 O HOH B 149 1555 1555 1.95 LINK MG MG B 123 O HOH B 369 1555 1555 2.17 LINK OD1 ASP C 10 MG MG C 123 1555 1555 2.09 LINK OD2 BFD C 53 MG MG C 123 1555 1555 2.05 LINK O MET C 55 MG MG C 123 1555 1555 2.14 LINK MG MG C 123 O HOH C 166 1555 1555 2.08 LINK MG MG C 123 O HOH C 194 1555 1555 2.18 LINK OD1 ASP D 10 MG MG D 123 1555 1555 2.13 LINK OD2 BFD D 53 MG MG D 123 1555 1555 2.07 LINK O MET D 55 MG MG D 123 1555 1555 2.07 LINK MG MG D 123 O HOH D 157 1555 1555 2.23 LINK MG MG D 123 O HOH D 174 1555 1555 2.13 CISPEP 1 LYS A 105 PRO A 106 0 0.21 CISPEP 2 LYS B 105 PRO B 106 0 -1.48 CISPEP 3 LYS C 105 PRO C 106 0 -0.85 CISPEP 4 LYS D 105 PRO D 106 0 -0.76 SITE 1 AC1 5 ASP A 10 BFD A 53 MET A 55 HOH A 148 SITE 2 AC1 5 HOH A 368 SITE 1 AC2 11 ARG A 100 GLU A 115 HIS A 118 LEU A 119 SITE 2 AC2 11 HOH A 367 HOH A 436 HOH A 490 HOH A 651 SITE 3 AC2 11 GLY D 87 GLU D 88 HOH D 137 SITE 1 AC3 5 ASP B 10 BFD B 53 MET B 55 HOH B 149 SITE 2 AC3 5 HOH B 369 SITE 1 AC4 9 GLY B 86 GLY B 87 ARG B 100 HIS B 118 SITE 2 AC4 9 LEU B 119 GLU B 122 HOH B 159 HOH B 171 SITE 3 AC4 9 HOH B 563 SITE 1 AC5 5 ASP C 10 BFD C 53 MET C 55 HOH C 166 SITE 2 AC5 5 HOH C 194 SITE 1 AC6 8 GLY A 87 GLU A 88 HOH A 276 ARG C 100 SITE 2 AC6 8 GLU C 115 HIS C 118 HOH C 141 HOH C 154 SITE 1 AC7 5 ASP D 10 BFD D 53 MET D 55 HOH D 157 SITE 2 AC7 5 HOH D 174 SITE 1 AC8 8 GLY C 87 GLU C 88 HOH C 241 ARG D 100 SITE 2 AC8 8 GLU D 115 HIS D 118 HOH D 165 HOH D 459 SITE 1 AC9 10 GLY A 98 ARG A 100 HOH A 140 HOH A 323 SITE 2 AC9 10 HOH A 427 HOH A 477 HOH A 596 LYS D 85 SITE 3 AC9 10 GLY D 86 ARG D 104 CRYST1 155.233 155.233 34.482 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006442 0.003719 0.000000 0.00000 SCALE2 0.000000 0.007438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029000 0.00000