HEADER STRUCTURAL PROTEIN 12-MAR-09 3GLE TITLE CRYSTAL STRUCTURE OF THE MAJOR PILIN FROM STREPTOCOCCUS PYOGENES N168A TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 18-308; COMPND 5 SYNONYM: PILUS BACKBONE STRUCTURAL PROTEIN, LANCEFIELD T ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES SEROTYPE M1; SOURCE 3 ORGANISM_TAXID: 301447; SOURCE 4 STRAIN: M1, SF370; SOURCE 5 GENE: M5005_SPY0109, SPY0128, SPY_0128; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX3C KEYWDS ALL-BETA, PILI, CELL ADHESION, STRUCTURAL PROTEIN, ISOPEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KANG,E.N.BAKER REVDAT 4 01-NOV-23 3GLE 1 REMARK REVDAT 3 10-NOV-21 3GLE 1 SEQADV LINK REVDAT 2 13-JUL-11 3GLE 1 VERSN REVDAT 1 02-JUN-09 3GLE 0 JRNL AUTH H.J.KANG,E.N.BAKER JRNL TITL INTRAMOLECULAR ISOPEPTIDE BONDS GIVE THERMODYNAMIC AND JRNL TITL 2 PROTEOLYTIC STABILITY TO THE MAJOR PILIN PROTEIN OF JRNL TITL 3 STREPTOCOCCUS PYOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0078 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.379 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.847 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6821 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9276 ; 1.351 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 880 ; 6.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;35.156 ;26.910 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1239 ;13.426 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.332 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1078 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5077 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4250 ; 0.734 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6978 ; 1.399 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2571 ; 2.275 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2278 ; 3.899 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4170 7.3430 -58.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.0452 T22: 0.0801 REMARK 3 T33: 0.0434 T12: 0.0136 REMARK 3 T13: 0.0372 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.4610 L22: 0.2528 REMARK 3 L33: 3.7182 L12: 0.0514 REMARK 3 L13: 2.1356 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0850 S13: -0.0196 REMARK 3 S21: 0.0680 S22: 0.0123 S23: -0.0035 REMARK 3 S31: -0.1196 S32: -0.0417 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 307 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3640 7.9040 -19.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0810 REMARK 3 T33: 0.0466 T12: 0.0127 REMARK 3 T13: 0.0102 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.5317 L22: 0.2608 REMARK 3 L33: 4.0867 L12: -0.1699 REMARK 3 L13: 2.3439 L23: -0.3328 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0434 S13: -0.0301 REMARK 3 S21: 0.0173 S22: 0.0331 S23: 0.0158 REMARK 3 S31: -0.0523 S32: -0.0315 S33: -0.0251 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 28 C 307 REMARK 3 ORIGIN FOR THE GROUP (A): -37.6680 32.0360 -20.2470 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0583 REMARK 3 T33: 0.0140 T12: -0.0080 REMARK 3 T13: 0.0151 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.8889 L22: 0.2737 REMARK 3 L33: 3.9423 L12: -0.2589 REMARK 3 L13: 1.3354 L23: -0.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.0126 S13: 0.0128 REMARK 3 S21: -0.0243 S22: -0.0278 S23: 0.0053 REMARK 3 S31: 0.0877 S32: -0.0884 S33: 0.0239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 38.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MOPS/KOH PH7.5, 21% PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.43450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 HIS A 22 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 308 REMARK 465 GLY B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 THR B 20 REMARK 465 VAL B 21 REMARK 465 HIS B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 THR B 25 REMARK 465 VAL B 26 REMARK 465 GLU B 308 REMARK 465 GLY C 14 REMARK 465 PRO C 15 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 ALA C 18 REMARK 465 THR C 19 REMARK 465 THR C 20 REMARK 465 VAL C 21 REMARK 465 HIS C 22 REMARK 465 GLY C 23 REMARK 465 GLU C 24 REMARK 465 THR C 25 REMARK 465 VAL C 26 REMARK 465 VAL C 27 REMARK 465 GLU C 308 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN C 202 CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 179 CE LYS A 179 NZ 0.316 REMARK 500 LYS B 179 CE LYS B 179 NZ 0.425 REMARK 500 LYS C 179 CE LYS C 179 NZ 0.252 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 97.52 -69.95 REMARK 500 ASN A 92 16.77 59.71 REMARK 500 ILE A 120 -73.47 -57.07 REMARK 500 LYS A 157 -86.96 -98.84 REMARK 500 SER A 207 -9.11 75.61 REMARK 500 LYS A 217 68.94 -69.97 REMARK 500 ASP A 276 11.26 59.05 REMARK 500 ASP B 230 5.98 82.37 REMARK 500 LYS B 265 30.31 70.28 REMARK 500 THR B 293 -168.60 -125.05 REMARK 500 ASP C 65 -153.93 -124.94 REMARK 500 SER C 207 -11.49 83.36 REMARK 500 ASP C 230 3.32 80.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B2M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MAJOR PILIN FROM STREPTOCOCCUS PYOGENES REMARK 900 RELATED ID: 3GLD RELATED DB: PDB DBREF 3GLE A 18 308 UNP Q9A1S2 PILIN_STRP1 18 308 DBREF 3GLE B 18 308 UNP Q9A1S2 PILIN_STRP1 18 308 DBREF 3GLE C 18 308 UNP Q9A1S2 PILIN_STRP1 18 308 SEQADV 3GLE GLY A 14 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE PRO A 15 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE GLY A 16 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE SER A 17 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE ALA A 168 UNP Q9A1S2 ASN 168 ENGINEERED MUTATION SEQADV 3GLE VAL A 306 UNP Q9A1S2 ASP 306 ENGINEERED MUTATION SEQADV 3GLE GLY B 14 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE PRO B 15 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE GLY B 16 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE SER B 17 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE ALA B 168 UNP Q9A1S2 ASN 168 ENGINEERED MUTATION SEQADV 3GLE VAL B 306 UNP Q9A1S2 ASP 306 ENGINEERED MUTATION SEQADV 3GLE GLY C 14 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE PRO C 15 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE GLY C 16 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE SER C 17 UNP Q9A1S2 EXPRESSION TAG SEQADV 3GLE ALA C 168 UNP Q9A1S2 ASN 168 ENGINEERED MUTATION SEQADV 3GLE VAL C 306 UNP Q9A1S2 ASP 306 ENGINEERED MUTATION SEQRES 1 A 295 GLY PRO GLY SER ALA THR THR VAL HIS GLY GLU THR VAL SEQRES 2 A 295 VAL ASN GLY ALA LYS LEU THR VAL THR LYS ASN LEU ASP SEQRES 3 A 295 LEU VAL ASN SER ASN ALA LEU ILE PRO ASN THR ASP PHE SEQRES 4 A 295 THR PHE LYS ILE GLU PRO ASP THR THR VAL ASN GLU ASP SEQRES 5 A 295 GLY ASN LYS PHE LYS GLY VAL ALA LEU ASN THR PRO MET SEQRES 6 A 295 THR LYS VAL THR TYR THR ASN SER ASP LYS GLY GLY SER SEQRES 7 A 295 ASN THR LYS THR ALA GLU PHE ASP PHE SER GLU VAL THR SEQRES 8 A 295 PHE GLU LYS PRO GLY VAL TYR TYR TYR LYS VAL THR GLU SEQRES 9 A 295 GLU LYS ILE ASP LYS VAL PRO GLY VAL SER TYR ASP THR SEQRES 10 A 295 THR SER TYR THR VAL GLN VAL HIS VAL LEU TRP ASN GLU SEQRES 11 A 295 GLU GLN GLN LYS PRO VAL ALA THR TYR ILE VAL GLY TYR SEQRES 12 A 295 LYS GLU GLY SER LYS VAL PRO ILE GLN PHE LYS ALA SER SEQRES 13 A 295 LEU ASP SER THR THR LEU THR VAL LYS LYS LYS VAL SER SEQRES 14 A 295 GLY THR GLY GLY ASP ARG SER LYS ASP PHE ASN PHE GLY SEQRES 15 A 295 LEU THR LEU LYS ALA ASN GLN TYR TYR LYS ALA SER GLU SEQRES 16 A 295 LYS VAL MET ILE GLU LYS THR THR LYS GLY GLY GLN ALA SEQRES 17 A 295 PRO VAL GLN THR GLU ALA SER ILE ASP GLN LEU TYR HIS SEQRES 18 A 295 PHE THR LEU LYS ASP GLY GLU SER ILE LYS VAL THR ASN SEQRES 19 A 295 LEU PRO VAL GLY VAL ASP TYR VAL VAL THR GLU ASP ASP SEQRES 20 A 295 TYR LYS SER GLU LYS TYR THR THR ASN VAL GLU VAL SER SEQRES 21 A 295 PRO GLN ASP GLY ALA VAL LYS ASN ILE ALA GLY ASN SER SEQRES 22 A 295 THR GLU GLN GLU THR SER THR ASP LYS ASP MET THR ILE SEQRES 23 A 295 THR PHE THR ASN LYS LYS VAL PHE GLU SEQRES 1 B 295 GLY PRO GLY SER ALA THR THR VAL HIS GLY GLU THR VAL SEQRES 2 B 295 VAL ASN GLY ALA LYS LEU THR VAL THR LYS ASN LEU ASP SEQRES 3 B 295 LEU VAL ASN SER ASN ALA LEU ILE PRO ASN THR ASP PHE SEQRES 4 B 295 THR PHE LYS ILE GLU PRO ASP THR THR VAL ASN GLU ASP SEQRES 5 B 295 GLY ASN LYS PHE LYS GLY VAL ALA LEU ASN THR PRO MET SEQRES 6 B 295 THR LYS VAL THR TYR THR ASN SER ASP LYS GLY GLY SER SEQRES 7 B 295 ASN THR LYS THR ALA GLU PHE ASP PHE SER GLU VAL THR SEQRES 8 B 295 PHE GLU LYS PRO GLY VAL TYR TYR TYR LYS VAL THR GLU SEQRES 9 B 295 GLU LYS ILE ASP LYS VAL PRO GLY VAL SER TYR ASP THR SEQRES 10 B 295 THR SER TYR THR VAL GLN VAL HIS VAL LEU TRP ASN GLU SEQRES 11 B 295 GLU GLN GLN LYS PRO VAL ALA THR TYR ILE VAL GLY TYR SEQRES 12 B 295 LYS GLU GLY SER LYS VAL PRO ILE GLN PHE LYS ALA SER SEQRES 13 B 295 LEU ASP SER THR THR LEU THR VAL LYS LYS LYS VAL SER SEQRES 14 B 295 GLY THR GLY GLY ASP ARG SER LYS ASP PHE ASN PHE GLY SEQRES 15 B 295 LEU THR LEU LYS ALA ASN GLN TYR TYR LYS ALA SER GLU SEQRES 16 B 295 LYS VAL MET ILE GLU LYS THR THR LYS GLY GLY GLN ALA SEQRES 17 B 295 PRO VAL GLN THR GLU ALA SER ILE ASP GLN LEU TYR HIS SEQRES 18 B 295 PHE THR LEU LYS ASP GLY GLU SER ILE LYS VAL THR ASN SEQRES 19 B 295 LEU PRO VAL GLY VAL ASP TYR VAL VAL THR GLU ASP ASP SEQRES 20 B 295 TYR LYS SER GLU LYS TYR THR THR ASN VAL GLU VAL SER SEQRES 21 B 295 PRO GLN ASP GLY ALA VAL LYS ASN ILE ALA GLY ASN SER SEQRES 22 B 295 THR GLU GLN GLU THR SER THR ASP LYS ASP MET THR ILE SEQRES 23 B 295 THR PHE THR ASN LYS LYS VAL PHE GLU SEQRES 1 C 295 GLY PRO GLY SER ALA THR THR VAL HIS GLY GLU THR VAL SEQRES 2 C 295 VAL ASN GLY ALA LYS LEU THR VAL THR LYS ASN LEU ASP SEQRES 3 C 295 LEU VAL ASN SER ASN ALA LEU ILE PRO ASN THR ASP PHE SEQRES 4 C 295 THR PHE LYS ILE GLU PRO ASP THR THR VAL ASN GLU ASP SEQRES 5 C 295 GLY ASN LYS PHE LYS GLY VAL ALA LEU ASN THR PRO MET SEQRES 6 C 295 THR LYS VAL THR TYR THR ASN SER ASP LYS GLY GLY SER SEQRES 7 C 295 ASN THR LYS THR ALA GLU PHE ASP PHE SER GLU VAL THR SEQRES 8 C 295 PHE GLU LYS PRO GLY VAL TYR TYR TYR LYS VAL THR GLU SEQRES 9 C 295 GLU LYS ILE ASP LYS VAL PRO GLY VAL SER TYR ASP THR SEQRES 10 C 295 THR SER TYR THR VAL GLN VAL HIS VAL LEU TRP ASN GLU SEQRES 11 C 295 GLU GLN GLN LYS PRO VAL ALA THR TYR ILE VAL GLY TYR SEQRES 12 C 295 LYS GLU GLY SER LYS VAL PRO ILE GLN PHE LYS ALA SER SEQRES 13 C 295 LEU ASP SER THR THR LEU THR VAL LYS LYS LYS VAL SER SEQRES 14 C 295 GLY THR GLY GLY ASP ARG SER LYS ASP PHE ASN PHE GLY SEQRES 15 C 295 LEU THR LEU LYS ALA ASN GLN TYR TYR LYS ALA SER GLU SEQRES 16 C 295 LYS VAL MET ILE GLU LYS THR THR LYS GLY GLY GLN ALA SEQRES 17 C 295 PRO VAL GLN THR GLU ALA SER ILE ASP GLN LEU TYR HIS SEQRES 18 C 295 PHE THR LEU LYS ASP GLY GLU SER ILE LYS VAL THR ASN SEQRES 19 C 295 LEU PRO VAL GLY VAL ASP TYR VAL VAL THR GLU ASP ASP SEQRES 20 C 295 TYR LYS SER GLU LYS TYR THR THR ASN VAL GLU VAL SER SEQRES 21 C 295 PRO GLN ASP GLY ALA VAL LYS ASN ILE ALA GLY ASN SER SEQRES 22 C 295 THR GLU GLN GLU THR SER THR ASP LYS ASP MET THR ILE SEQRES 23 C 295 THR PHE THR ASN LYS LYS VAL PHE GLU FORMUL 4 HOH *324(H2 O) HELIX 1 1 THR A 84 LYS A 88 5 5 HELIX 2 2 TYR A 261 LYS A 265 5 5 HELIX 3 3 THR B 84 LYS B 88 5 5 HELIX 4 4 TYR B 261 LYS B 265 5 5 HELIX 5 5 THR C 84 LYS C 88 5 5 HELIX 6 6 TYR C 261 LYS C 265 5 5 SHEET 1 A 5 VAL A 26 ASN A 28 0 SHEET 2 A 5 LYS A 147 TYR A 156 -1 O ILE A 153 N VAL A 27 SHEET 3 A 5 SER A 132 ASN A 142 -1 N GLN A 136 O VAL A 154 SHEET 4 A 5 GLY A 109 GLU A 118 -1 N GLY A 109 O VAL A 139 SHEET 5 A 5 LYS A 68 LYS A 70 1 N PHE A 69 O VAL A 110 SHEET 1 B 6 VAL A 26 ASN A 28 0 SHEET 2 B 6 LYS A 147 TYR A 156 -1 O ILE A 153 N VAL A 27 SHEET 3 B 6 SER A 132 ASN A 142 -1 N GLN A 136 O VAL A 154 SHEET 4 B 6 GLY A 109 GLU A 118 -1 N GLY A 109 O VAL A 139 SHEET 5 B 6 THR A 50 PRO A 58 -1 N THR A 53 O GLU A 118 SHEET 6 B 6 MET A 78 TYR A 83 -1 O TYR A 83 N THR A 50 SHEET 1 C 3 THR A 93 ASP A 99 0 SHEET 2 C 3 LYS A 31 LEU A 40 -1 N LYS A 36 O LYS A 94 SHEET 3 C 3 ILE A 164 LEU A 170 1 O ALA A 168 N ASP A 39 SHEET 1 D 7 VAL A 223 SER A 228 0 SHEET 2 D 7 LYS A 209 THR A 215 -1 N ILE A 212 O THR A 225 SHEET 3 D 7 SER A 242 PRO A 249 -1 O SER A 242 N THR A 215 SHEET 4 D 7 SER A 172 SER A 182 -1 N LEU A 175 O VAL A 245 SHEET 5 D 7 MET A 297 LYS A 304 1 O ILE A 299 N THR A 176 SHEET 6 D 7 THR A 267 PRO A 274 -1 N THR A 267 O LYS A 304 SHEET 7 D 7 LYS A 280 ALA A 283 -1 O ILE A 282 N VAL A 270 SHEET 1 E 4 TYR A 233 LEU A 237 0 SHEET 2 E 4 PHE A 192 LEU A 198 -1 N LEU A 196 O TYR A 233 SHEET 3 E 4 ASP A 253 GLU A 258 -1 O THR A 257 N GLY A 195 SHEET 4 E 4 GLU A 290 THR A 291 -1 O GLU A 290 N TYR A 254 SHEET 1 F 4 THR B 93 ASP B 99 0 SHEET 2 F 4 LYS B 31 LEU B 40 -1 N LYS B 36 O LYS B 94 SHEET 3 F 4 ILE B 164 LEU B 170 1 O PHE B 166 N THR B 35 SHEET 4 F 4 VAL B 126 SER B 127 -1 N SER B 127 O SER B 169 SHEET 1 G 4 LYS B 68 LYS B 70 0 SHEET 2 G 4 GLY B 109 GLU B 118 1 O VAL B 110 N PHE B 69 SHEET 3 G 4 THR B 50 PRO B 58 -1 N THR B 53 O GLU B 118 SHEET 4 G 4 MET B 78 TYR B 83 -1 O TYR B 83 N THR B 50 SHEET 1 H 5 LYS B 68 LYS B 70 0 SHEET 2 H 5 GLY B 109 GLU B 118 1 O VAL B 110 N PHE B 69 SHEET 3 H 5 TYR B 133 ASN B 142 -1 O VAL B 137 N TYR B 111 SHEET 4 H 5 LYS B 147 LYS B 157 -1 O THR B 151 N HIS B 138 SHEET 5 H 5 SER B 160 LYS B 161 -1 O SER B 160 N LYS B 157 SHEET 1 I 7 VAL B 223 SER B 228 0 SHEET 2 I 7 LYS B 209 THR B 215 -1 N ILE B 212 O THR B 225 SHEET 3 I 7 SER B 242 PRO B 249 -1 O LYS B 244 N GLU B 213 SHEET 4 I 7 SER B 172 SER B 182 -1 N THR B 173 O LEU B 248 SHEET 5 I 7 MET B 297 LYS B 304 1 O ILE B 299 N THR B 176 SHEET 6 I 7 THR B 267 SER B 273 -1 N ASN B 269 O THR B 302 SHEET 7 I 7 LYS B 280 ALA B 283 -1 O LYS B 280 N VAL B 272 SHEET 1 J 4 TYR B 233 LEU B 237 0 SHEET 2 J 4 PHE B 192 LEU B 198 -1 N PHE B 192 O LEU B 237 SHEET 3 J 4 ASP B 253 GLU B 258 -1 O THR B 257 N GLY B 195 SHEET 4 J 4 GLU B 290 THR B 291 -1 O GLU B 290 N TYR B 254 SHEET 1 K 4 THR C 93 ASP C 99 0 SHEET 2 K 4 LYS C 31 LEU C 40 -1 N LEU C 32 O PHE C 98 SHEET 3 K 4 ILE C 164 LEU C 170 1 O ALA C 168 N ASP C 39 SHEET 4 K 4 VAL C 126 SER C 127 -1 N SER C 127 O SER C 169 SHEET 1 L 4 LYS C 68 LYS C 70 0 SHEET 2 L 4 GLY C 109 GLU C 118 1 O VAL C 110 N PHE C 69 SHEET 3 L 4 THR C 50 PRO C 58 -1 N LYS C 55 O THR C 116 SHEET 4 L 4 MET C 78 TYR C 83 -1 O THR C 79 N PHE C 54 SHEET 1 M 5 LYS C 68 LYS C 70 0 SHEET 2 M 5 GLY C 109 GLU C 118 1 O VAL C 110 N PHE C 69 SHEET 3 M 5 SER C 132 ASN C 142 -1 O VAL C 137 N TYR C 111 SHEET 4 M 5 LYS C 147 LYS C 157 -1 O TYR C 152 N HIS C 138 SHEET 5 M 5 SER C 160 LYS C 161 -1 O SER C 160 N LYS C 157 SHEET 1 N 7 VAL C 223 SER C 228 0 SHEET 2 N 7 LYS C 209 THR C 215 -1 N ILE C 212 O THR C 225 SHEET 3 N 7 SER C 242 PRO C 249 -1 O SER C 242 N THR C 215 SHEET 4 N 7 SER C 172 SER C 182 -1 N THR C 173 O LEU C 248 SHEET 5 N 7 MET C 297 LYS C 304 1 O ILE C 299 N THR C 176 SHEET 6 N 7 THR C 267 PRO C 274 -1 N ASN C 269 O THR C 302 SHEET 7 N 7 LYS C 280 ALA C 283 -1 O ILE C 282 N VAL C 270 SHEET 1 O 4 TYR C 233 LEU C 237 0 SHEET 2 O 4 PHE C 192 LEU C 198 -1 N LEU C 196 O TYR C 233 SHEET 3 O 4 ASP C 253 GLU C 258 -1 O THR C 257 N GLY C 195 SHEET 4 O 4 GLU C 290 THR C 291 -1 O GLU C 290 N TYR C 254 LINK NZ LYS A 179 CG ASN A 303 1555 1555 1.32 LINK NZ LYS B 179 CG ASN B 303 1555 1555 1.31 LINK NZ LYS C 179 CG ASN C 303 1555 1555 1.31 CRYST1 64.712 50.869 123.200 90.00 104.27 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015453 0.000000 0.003930 0.00000 SCALE2 0.000000 0.019658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008375 0.00000