HEADER HYDROLASE/HYDROLASE REGULATOR 12-MAR-09 3GLT
TITLE CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ADPR BOUND TO THE ACECS2 PEPTIDE
TITLE 2 CONTAINING A THIOACETYL LYSINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NAD-DEPENDENT DEACETYLASE SIRTUIN-3, MITOCHONDRIAL;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: HUMAN SIRT3, RESIDUES 118-399;
COMPND 5 SYNONYM: SIR2-LIKE PROTEIN 3, HSIRT3;
COMPND 6 EC: 3.5.1.-;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL;
COMPND 10 CHAIN: B;
COMPND 11 FRAGMENT: ACECS2 PEPTIDE, RESIDUES 638-649;
COMPND 12 SYNONYM: ACETATE--COA LIGASE 2, ACETYL-COA SYNTHETASE 2, ACYL-COA
COMPND 13 SYNTHETASE SHORT-CHAIN FAMILY MEMBER 1;
COMPND 14 EC: 6.2.1.1;
COMPND 15 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SIR2L3, SIRT3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET21B;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 14 ORGANISM_COMMON: HUMAN;
SOURCE 15 ORGANISM_TAXID: 9606
KEYWDS NAD DEPENDENT DEACETYLASE, SIRTUIN, INTERMEDIATE TRAPPED STRUCTURE,
KEYWDS 2 THIOACETYL PEPTIDE, HYDROLASE, METAL-BINDING, MITOCHONDRION, NAD,
KEYWDS 3 POLYMORPHISM, TRANSIT PEPTIDE, ZINC, ALTERNATIVE SPLICING, LIGASE,
KEYWDS 4 HYDROLASE-HYDROLASE REGULATOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR L.JIN,W.WEI,Y.JIANG,H.PENG,J.CAI,C.MAO,H.DAI,J.E.BEMIS,M.R.JIROUSEK,
AUTHOR 2 J.C.MILNE,C.H.WESTPHAL,R.B.PERNI
REVDAT 5 16-OCT-24 3GLT 1 REMARK
REVDAT 4 22-NOV-23 3GLT 1 REMARK
REVDAT 3 06-SEP-23 3GLT 1 REMARK SEQADV LINK
REVDAT 2 15-SEP-09 3GLT 1 JRNL
REVDAT 1 16-JUN-09 3GLT 0
JRNL AUTH L.JIN,W.WEI,Y.JIANG,H.PENG,J.CAI,C.MAO,H.DAI,W.CHOY,
JRNL AUTH 2 J.E.BEMIS,M.R.JIROUSEK,J.C.MILNE,C.H.WESTPHAL,R.B.PERNI
JRNL TITL CRYSTAL STRUCTURES OF HUMAN SIRT3 DISPLAYING
JRNL TITL 2 SUBSTRATE-INDUCED CONFORMATIONAL CHANGES.
JRNL REF J.BIOL.CHEM. V. 284 24394 2009
JRNL REFN ISSN 0021-9258
JRNL PMID 19535340
JRNL DOI 10.1074/JBC.M109.014928
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0066
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 22231
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.197
REMARK 3 R VALUE (WORKING SET) : 0.195
REMARK 3 FREE R VALUE : 0.228
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200
REMARK 3 FREE R VALUE TEST SET COUNT : 1210
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1615
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36
REMARK 3 BIN R VALUE (WORKING SET) : 0.2230
REMARK 3 BIN FREE R VALUE SET COUNT : 106
REMARK 3 BIN FREE R VALUE : 0.2980
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2231
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 10
REMARK 3 SOLVENT ATOMS : 142
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.03000
REMARK 3 B22 (A**2) : -0.29000
REMARK 3 B33 (A**2) : 0.26000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.181
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2295 ; 0.015 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3129 ; 1.519 ; 2.014
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 5.682 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;34.591 ;22.604
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;15.008 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.661 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.102 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1731 ; 0.007 ; 0.022
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 0.827 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2275 ; 1.519 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 2.330 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 854 ; 3.786 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3GLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-09.
REMARK 100 THE DEPOSITION ID IS D_1000052021.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-OCT-08
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918
REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE
REMARK 200 CRYSTAL SI(111) SIDE BOUNCE
REMARK 200 MONOCHROMATOR
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23467
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 65.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 4.000
REMARK 200 R MERGE (I) : 0.09000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 3GLR
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 17%
REMARK 280 W/V PEG 12000 AND 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.41550
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.41550
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.35900
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.64050
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.35900
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.64050
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.41550
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.35900
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.64050
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.41550
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.35900
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.64050
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12460 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 115
REMARK 465 ASN A 116
REMARK 465 ALA A 117
REMARK 465 SER A 118
REMARK 465 ASP A 119
REMARK 465 LYS A 120
REMARK 465 ASP A 395
REMARK 465 GLY A 396
REMARK 465 PRO A 397
REMARK 465 ASP A 398
REMARK 465 LYS A 399
REMARK 465 THR B 638
REMARK 465 ARG B 639
REMARK 465 ARG B 646
REMARK 465 LEU B 647
REMARK 465 LEU B 648
REMARK 465 ARG B 649
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLN A 169 OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 GLY B 641 -20.37
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 1 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 256 SG
REMARK 620 2 CYS A 259 SG 108.8
REMARK 620 3 CYS A 280 SG 105.8 110.1
REMARK 620 4 CYS A 283 SG 95.5 119.8 114.7
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 4
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3GLR RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ACETYL-LYSINE ACECS2 PEPTIDE
REMARK 900 RELATED ID: 3GLS RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3
REMARK 900 RELATED ID: 3GLU RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ACECS2 PEPTIDE
DBREF 3GLT A 118 399 UNP Q9NTG7 SIRT3_HUMAN 118 399
DBREF 3GLT B 638 649 UNP Q9NUB1 ACS2L_HUMAN 638 649
SEQADV 3GLT SER A 115 UNP Q9NTG7 EXPRESSION TAG
SEQADV 3GLT ASN A 116 UNP Q9NTG7 EXPRESSION TAG
SEQADV 3GLT ALA A 117 UNP Q9NTG7 EXPRESSION TAG
SEQRES 1 A 285 SER ASN ALA SER ASP LYS GLY LYS LEU SER LEU GLN ASP
SEQRES 2 A 285 VAL ALA GLU LEU ILE ARG ALA ARG ALA CYS GLN ARG VAL
SEQRES 3 A 285 VAL VAL MET VAL GLY ALA GLY ILE SER THR PRO SER GLY
SEQRES 4 A 285 ILE PRO ASP PHE ARG SER PRO GLY SER GLY LEU TYR SER
SEQRES 5 A 285 ASN LEU GLN GLN TYR ASP LEU PRO TYR PRO GLU ALA ILE
SEQRES 6 A 285 PHE GLU LEU PRO PHE PHE PHE HIS ASN PRO LYS PRO PHE
SEQRES 7 A 285 PHE THR LEU ALA LYS GLU LEU TYR PRO GLY ASN TYR LYS
SEQRES 8 A 285 PRO ASN VAL THR HIS TYR PHE LEU ARG LEU LEU HIS ASP
SEQRES 9 A 285 LYS GLY LEU LEU LEU ARG LEU TYR THR GLN ASN ILE ASP
SEQRES 10 A 285 GLY LEU GLU ARG VAL SER GLY ILE PRO ALA SER LYS LEU
SEQRES 11 A 285 VAL GLU ALA HIS GLY THR PHE ALA SER ALA THR CYS THR
SEQRES 12 A 285 VAL CYS GLN ARG PRO PHE PRO GLY GLU ASP ILE ARG ALA
SEQRES 13 A 285 ASP VAL MET ALA ASP ARG VAL PRO ARG CYS PRO VAL CYS
SEQRES 14 A 285 THR GLY VAL VAL LYS PRO ASP ILE VAL PHE PHE GLY GLU
SEQRES 15 A 285 PRO LEU PRO GLN ARG PHE LEU LEU HIS VAL VAL ASP PHE
SEQRES 16 A 285 PRO MET ALA ASP LEU LEU LEU ILE LEU GLY THR SER LEU
SEQRES 17 A 285 GLU VAL GLU PRO PHE ALA SER LEU THR GLU ALA VAL ARG
SEQRES 18 A 285 SER SER VAL PRO ARG LEU LEU ILE ASN ARG ASP LEU VAL
SEQRES 19 A 285 GLY PRO LEU ALA TRP HIS PRO ARG SER ARG ASP VAL ALA
SEQRES 20 A 285 GLN LEU GLY ASP VAL VAL HIS GLY VAL GLU SER LEU VAL
SEQRES 21 A 285 GLU LEU LEU GLY TRP THR GLU GLU MET ARG ASP LEU VAL
SEQRES 22 A 285 GLN ARG GLU THR GLY LYS LEU ASP GLY PRO ASP LYS
SEQRES 1 B 12 THR ARG SER GLY FZN VAL MET ARG ARG LEU LEU ARG
MODRES 3GLT FZN B 642 LYS
HET FZN B 642 47
HET ZN A 1 1
HET SO4 A 2 5
HET CO3 A 4 4
HETNAM FZN (2S)-2-AMINO-6-{[(1Z)-1-{[(2R,3R,4S,5R)-5-({[(R)-{[(R)-
HETNAM 2 FZN {[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-
HETNAM 3 FZN DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)
HETNAM 4 FZN PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-
HETNAM 5 FZN DIHYDROXYTETRAHYDROFURAN-2-
HETNAM 6 FZN YL]SULFANYL}ETHYLIDENE]AMINO}HEXANOIC ACID
HETNAM ZN ZINC ION
HETNAM SO4 SULFATE ION
HETNAM CO3 CARBONATE ION
FORMUL 2 FZN C23 H37 N7 O15 P2 S
FORMUL 3 ZN ZN 2+
FORMUL 4 SO4 O4 S 2-
FORMUL 5 CO3 C O3 2-
FORMUL 6 HOH *142(H2 O)
HELIX 1 1 SER A 124 ALA A 134 1 11
HELIX 2 2 ALA A 146 GLY A 153 5 8
HELIX 3 3 GLY A 163 ASN A 167 5 5
HELIX 4 4 TYR A 175 PHE A 180 5 6
HELIX 5 5 GLU A 181 ASN A 188 1 8
HELIX 6 6 PRO A 189 TYR A 200 1 12
HELIX 7 7 ASN A 207 LYS A 219 1 13
HELIX 8 8 GLY A 232 SER A 237 1 6
HELIX 9 9 PRO A 240 SER A 242 5 3
HELIX 10 10 ILE A 268 ALA A 274 1 7
HELIX 11 11 PRO A 299 LEU A 303 5 5
HELIX 12 12 LEU A 304 ALA A 312 1 9
HELIX 13 13 PHE A 327 VAL A 334 5 8
HELIX 14 14 VAL A 348 HIS A 354 1 7
HELIX 15 15 ASP A 365 GLY A 378 1 14
HELIX 16 16 TRP A 379 LYS A 393 1 15
SHEET 1 A 6 LEU A 244 GLU A 246 0
SHEET 2 A 6 LEU A 222 THR A 227 1 N LEU A 225 O VAL A 245
SHEET 3 A 6 VAL A 140 VAL A 144 1 N VAL A 142 O TYR A 226
SHEET 4 A 6 LEU A 314 LEU A 318 1 O LEU A 318 N MET A 143
SHEET 5 A 6 ARG A 340 ASN A 344 1 O LEU A 341 N ILE A 317
SHEET 6 A 6 ASP A 359 LEU A 363 1 O GLN A 362 N LEU A 342
SHEET 1 B 3 PRO A 262 PRO A 264 0
SHEET 2 B 3 GLY A 249 CYS A 256 -1 N ALA A 254 O PHE A 263
SHEET 3 B 3 VAL A 287 ILE A 291 -1 O ASP A 290 N SER A 253
SHEET 1 C 2 VAL A 324 GLU A 325 0
SHEET 2 C 2 VAL B 643 MET B 644 -1 O VAL B 643 N GLU A 325
LINK C GLY B 641 N FZN B 642 1555 1555 1.31
LINK C FZN B 642 N VAL B 643 1555 1555 1.22
LINK ZN ZN A 1 SG CYS A 256 1555 1555 2.42
LINK ZN ZN A 1 SG CYS A 259 1555 1555 2.34
LINK ZN ZN A 1 SG CYS A 280 1555 1555 2.30
LINK ZN ZN A 1 SG CYS A 283 1555 1555 2.25
CISPEP 1 GLY A 121 LYS A 122 0 -9.22
CISPEP 2 GLU A 325 PRO A 326 0 -1.47
CISPEP 3 SER B 640 GLY B 641 0 -2.54
SITE 1 AC1 4 CYS A 256 CYS A 259 CYS A 280 CYS A 283
SITE 1 AC2 5 HOH A 19 HOH A 25 VAL A 277 ARG A 279
SITE 2 AC2 5 ARG A 384
SITE 1 AC3 4 ARG A 135 GLN A 138 LYS A 219 GLU A 382
CRYST1 80.718 127.281 76.831 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012389 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007857 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013016 0.00000