HEADER HYDROLASE/HYDROLASE REGULATOR 12-MAR-09 3GLT TITLE CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ADPR BOUND TO THE ACECS2 PEPTIDE TITLE 2 CONTAINING A THIOACETYL LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT DEACETYLASE SIRTUIN-3, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN SIRT3, RESIDUES 118-399; COMPND 5 SYNONYM: SIR2-LIKE PROTEIN 3, HSIRT3; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: ACECS2 PEPTIDE, RESIDUES 638-649; COMPND 12 SYNONYM: ACETATE--COA LIGASE 2, ACETYL-COA SYNTHETASE 2, ACYL-COA COMPND 13 SYNTHETASE SHORT-CHAIN FAMILY MEMBER 1; COMPND 14 EC: 6.2.1.1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIR2L3, SIRT3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS NAD DEPENDENT DEACETYLASE, SIRTUIN, INTERMEDIATE TRAPPED STRUCTURE, KEYWDS 2 THIOACETYL PEPTIDE, HYDROLASE, METAL-BINDING, MITOCHONDRION, NAD, KEYWDS 3 POLYMORPHISM, TRANSIT PEPTIDE, ZINC, ALTERNATIVE SPLICING, LIGASE, KEYWDS 4 HYDROLASE-HYDROLASE REGULATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.JIN,W.WEI,Y.JIANG,H.PENG,J.CAI,C.MAO,H.DAI,J.E.BEMIS,M.R.JIROUSEK, AUTHOR 2 J.C.MILNE,C.H.WESTPHAL,R.B.PERNI REVDAT 4 22-NOV-23 3GLT 1 REMARK REVDAT 3 06-SEP-23 3GLT 1 REMARK SEQADV LINK REVDAT 2 15-SEP-09 3GLT 1 JRNL REVDAT 1 16-JUN-09 3GLT 0 JRNL AUTH L.JIN,W.WEI,Y.JIANG,H.PENG,J.CAI,C.MAO,H.DAI,W.CHOY, JRNL AUTH 2 J.E.BEMIS,M.R.JIROUSEK,J.C.MILNE,C.H.WESTPHAL,R.B.PERNI JRNL TITL CRYSTAL STRUCTURES OF HUMAN SIRT3 DISPLAYING JRNL TITL 2 SUBSTRATE-INDUCED CONFORMATIONAL CHANGES. JRNL REF J.BIOL.CHEM. V. 284 24394 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19535340 JRNL DOI 10.1074/JBC.M109.014928 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1615 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2295 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3129 ; 1.519 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 5.682 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;34.591 ;22.604 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;15.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1731 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 0.827 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2275 ; 1.519 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 2.330 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 854 ; 3.786 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(111) SIDE BOUNCE REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 17% REMARK 280 W/V PEG 12000 AND 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.41550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.41550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.35900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.64050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.35900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.64050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.41550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.35900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.64050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.41550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.35900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.64050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 ASN A 116 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 ASP A 119 REMARK 465 LYS A 120 REMARK 465 ASP A 395 REMARK 465 GLY A 396 REMARK 465 PRO A 397 REMARK 465 ASP A 398 REMARK 465 LYS A 399 REMARK 465 THR B 638 REMARK 465 ARG B 639 REMARK 465 ARG B 646 REMARK 465 LEU B 647 REMARK 465 LEU B 648 REMARK 465 ARG B 649 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 169 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 641 -20.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 CYS A 259 SG 108.8 REMARK 620 3 CYS A 280 SG 105.8 110.1 REMARK 620 4 CYS A 283 SG 95.5 119.8 114.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GLR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ACETYL-LYSINE ACECS2 PEPTIDE REMARK 900 RELATED ID: 3GLS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 REMARK 900 RELATED ID: 3GLU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ACECS2 PEPTIDE DBREF 3GLT A 118 399 UNP Q9NTG7 SIRT3_HUMAN 118 399 DBREF 3GLT B 638 649 UNP Q9NUB1 ACS2L_HUMAN 638 649 SEQADV 3GLT SER A 115 UNP Q9NTG7 EXPRESSION TAG SEQADV 3GLT ASN A 116 UNP Q9NTG7 EXPRESSION TAG SEQADV 3GLT ALA A 117 UNP Q9NTG7 EXPRESSION TAG SEQRES 1 A 285 SER ASN ALA SER ASP LYS GLY LYS LEU SER LEU GLN ASP SEQRES 2 A 285 VAL ALA GLU LEU ILE ARG ALA ARG ALA CYS GLN ARG VAL SEQRES 3 A 285 VAL VAL MET VAL GLY ALA GLY ILE SER THR PRO SER GLY SEQRES 4 A 285 ILE PRO ASP PHE ARG SER PRO GLY SER GLY LEU TYR SER SEQRES 5 A 285 ASN LEU GLN GLN TYR ASP LEU PRO TYR PRO GLU ALA ILE SEQRES 6 A 285 PHE GLU LEU PRO PHE PHE PHE HIS ASN PRO LYS PRO PHE SEQRES 7 A 285 PHE THR LEU ALA LYS GLU LEU TYR PRO GLY ASN TYR LYS SEQRES 8 A 285 PRO ASN VAL THR HIS TYR PHE LEU ARG LEU LEU HIS ASP SEQRES 9 A 285 LYS GLY LEU LEU LEU ARG LEU TYR THR GLN ASN ILE ASP SEQRES 10 A 285 GLY LEU GLU ARG VAL SER GLY ILE PRO ALA SER LYS LEU SEQRES 11 A 285 VAL GLU ALA HIS GLY THR PHE ALA SER ALA THR CYS THR SEQRES 12 A 285 VAL CYS GLN ARG PRO PHE PRO GLY GLU ASP ILE ARG ALA SEQRES 13 A 285 ASP VAL MET ALA ASP ARG VAL PRO ARG CYS PRO VAL CYS SEQRES 14 A 285 THR GLY VAL VAL LYS PRO ASP ILE VAL PHE PHE GLY GLU SEQRES 15 A 285 PRO LEU PRO GLN ARG PHE LEU LEU HIS VAL VAL ASP PHE SEQRES 16 A 285 PRO MET ALA ASP LEU LEU LEU ILE LEU GLY THR SER LEU SEQRES 17 A 285 GLU VAL GLU PRO PHE ALA SER LEU THR GLU ALA VAL ARG SEQRES 18 A 285 SER SER VAL PRO ARG LEU LEU ILE ASN ARG ASP LEU VAL SEQRES 19 A 285 GLY PRO LEU ALA TRP HIS PRO ARG SER ARG ASP VAL ALA SEQRES 20 A 285 GLN LEU GLY ASP VAL VAL HIS GLY VAL GLU SER LEU VAL SEQRES 21 A 285 GLU LEU LEU GLY TRP THR GLU GLU MET ARG ASP LEU VAL SEQRES 22 A 285 GLN ARG GLU THR GLY LYS LEU ASP GLY PRO ASP LYS SEQRES 1 B 12 THR ARG SER GLY FZN VAL MET ARG ARG LEU LEU ARG MODRES 3GLT FZN B 642 LYS HET FZN B 642 47 HET ZN A 1 1 HET SO4 A 2 5 HET CO3 A 4 4 HETNAM FZN (2S)-2-AMINO-6-{[(1Z)-1-{[(2R,3R,4S,5R)-5-({[(R)-{[(R)- HETNAM 2 FZN {[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 3 FZN DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY) HETNAM 4 FZN PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4- HETNAM 5 FZN DIHYDROXYTETRAHYDROFURAN-2- HETNAM 6 FZN YL]SULFANYL}ETHYLIDENE]AMINO}HEXANOIC ACID HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CO3 CARBONATE ION FORMUL 2 FZN C23 H37 N7 O15 P2 S FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 CO3 C O3 2- FORMUL 6 HOH *142(H2 O) HELIX 1 1 SER A 124 ALA A 134 1 11 HELIX 2 2 ALA A 146 GLY A 153 5 8 HELIX 3 3 GLY A 163 ASN A 167 5 5 HELIX 4 4 TYR A 175 PHE A 180 5 6 HELIX 5 5 GLU A 181 ASN A 188 1 8 HELIX 6 6 PRO A 189 TYR A 200 1 12 HELIX 7 7 ASN A 207 LYS A 219 1 13 HELIX 8 8 GLY A 232 SER A 237 1 6 HELIX 9 9 PRO A 240 SER A 242 5 3 HELIX 10 10 ILE A 268 ALA A 274 1 7 HELIX 11 11 PRO A 299 LEU A 303 5 5 HELIX 12 12 LEU A 304 ALA A 312 1 9 HELIX 13 13 PHE A 327 VAL A 334 5 8 HELIX 14 14 VAL A 348 HIS A 354 1 7 HELIX 15 15 ASP A 365 GLY A 378 1 14 HELIX 16 16 TRP A 379 LYS A 393 1 15 SHEET 1 A 6 LEU A 244 GLU A 246 0 SHEET 2 A 6 LEU A 222 THR A 227 1 N LEU A 225 O VAL A 245 SHEET 3 A 6 VAL A 140 VAL A 144 1 N VAL A 142 O TYR A 226 SHEET 4 A 6 LEU A 314 LEU A 318 1 O LEU A 318 N MET A 143 SHEET 5 A 6 ARG A 340 ASN A 344 1 O LEU A 341 N ILE A 317 SHEET 6 A 6 ASP A 359 LEU A 363 1 O GLN A 362 N LEU A 342 SHEET 1 B 3 PRO A 262 PRO A 264 0 SHEET 2 B 3 GLY A 249 CYS A 256 -1 N ALA A 254 O PHE A 263 SHEET 3 B 3 VAL A 287 ILE A 291 -1 O ASP A 290 N SER A 253 SHEET 1 C 2 VAL A 324 GLU A 325 0 SHEET 2 C 2 VAL B 643 MET B 644 -1 O VAL B 643 N GLU A 325 LINK C GLY B 641 N FZN B 642 1555 1555 1.31 LINK C FZN B 642 N VAL B 643 1555 1555 1.22 LINK ZN ZN A 1 SG CYS A 256 1555 1555 2.42 LINK ZN ZN A 1 SG CYS A 259 1555 1555 2.34 LINK ZN ZN A 1 SG CYS A 280 1555 1555 2.30 LINK ZN ZN A 1 SG CYS A 283 1555 1555 2.25 CISPEP 1 GLY A 121 LYS A 122 0 -9.22 CISPEP 2 GLU A 325 PRO A 326 0 -1.47 CISPEP 3 SER B 640 GLY B 641 0 -2.54 SITE 1 AC1 4 CYS A 256 CYS A 259 CYS A 280 CYS A 283 SITE 1 AC2 5 HOH A 19 HOH A 25 VAL A 277 ARG A 279 SITE 2 AC2 5 ARG A 384 SITE 1 AC3 4 ARG A 135 GLN A 138 LYS A 219 GLU A 382 CRYST1 80.718 127.281 76.831 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013016 0.00000