HEADER BIOSYNTHETIC PROTEIN 12-MAR-09 3GLV TITLE CRYSTAL STRUCTURE OF THE LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN TITLE 2 FROM THERMOPLASMA VOLCANIUM GSS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA VOLCANIUM GSS1; SOURCE 3 ORGANISM_TAXID: 273116; SOURCE 4 STRAIN: GSS1 / DSM 4299 / IFO 15438 / JCM 9571; SOURCE 5 ATCC: 51530; SOURCE 6 GENE: GI:14325477, TV1239, TVG1279046; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 PSI, MCSG, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,A.SATHER,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 21-FEB-24 3GLV 1 REMARK SEQADV REVDAT 3 01-NOV-17 3GLV 1 REMARK REVDAT 2 13-JUL-11 3GLV 1 VERSN REVDAT 1 12-MAY-09 3GLV 0 JRNL AUTH R.ZHANG,A.SATHER,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE LIPOPOLYSACCHARIDE CORE JRNL TITL 2 BIOSYNTHESIS PROTEIN FROM THERMOPLASMA VOLCANIUM GSS1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 26291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.44000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : -2.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1971 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1347 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2653 ; 1.733 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3315 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 5.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;36.540 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;14.490 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2094 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 1.028 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 497 ; 0.251 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1949 ; 1.893 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 771 ; 2.974 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 704 ; 4.681 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 60 REMARK 3 RESIDUE RANGE : A 61 A 121 REMARK 3 RESIDUE RANGE : B 0 B 60 REMARK 3 RESIDUE RANGE : B 61 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0110 42.2400 -9.8970 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.1421 REMARK 3 T33: 0.0177 T12: 0.0387 REMARK 3 T13: -0.0230 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.9258 L22: 1.1041 REMARK 3 L33: 1.5034 L12: 0.4842 REMARK 3 L13: -0.8864 L23: -0.4773 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: -0.0532 S13: -0.0360 REMARK 3 S21: -0.0247 S22: -0.0171 S23: -0.0348 REMARK 3 S31: 0.2213 S32: 0.0671 S33: 0.1066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794, 0.9796 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 55.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM CHLORIDE, 0.1M TRIS-HCL, REMARK 280 25% PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.19550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.51600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.59350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.51600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.19550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.59350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 122 REMARK 465 GLN A 123 REMARK 465 LEU A 124 REMARK 465 ASN A 125 REMARK 465 SER A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 VAL A 130 REMARK 465 ARG A 131 REMARK 465 LYS A 132 REMARK 465 LYS A 133 REMARK 465 ILE A 134 REMARK 465 MET A 135 REMARK 465 GLU A 136 REMARK 465 LEU A 137 REMARK 465 ILE A 138 REMARK 465 GLY A 139 REMARK 465 GLU A 140 REMARK 465 ARG A 141 REMARK 465 TYR A 142 REMARK 465 GLY B 122 REMARK 465 GLN B 123 REMARK 465 LEU B 124 REMARK 465 ASN B 125 REMARK 465 SER B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 SER B 129 REMARK 465 VAL B 130 REMARK 465 ARG B 131 REMARK 465 LYS B 132 REMARK 465 LYS B 133 REMARK 465 ILE B 134 REMARK 465 MET B 135 REMARK 465 GLU B 136 REMARK 465 LEU B 137 REMARK 465 ILE B 138 REMARK 465 GLY B 139 REMARK 465 GLU B 140 REMARK 465 ARG B 141 REMARK 465 TYR B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 73 O HOH B 189 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 89 CB THR A 89 CG2 -0.324 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 73 -21.85 -32.84 REMARK 500 ASP A 75 83.38 -161.75 REMARK 500 GLN A 94 49.82 -98.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61186.1 RELATED DB: TARGETDB DBREF 3GLV A 1 142 UNP Q979C2 Q979C2_THEVO 1 142 DBREF 3GLV B 1 142 UNP Q979C2 Q979C2_THEVO 1 142 SEQADV 3GLV GLY A 0 UNP Q979C2 EXPRESSION TAG SEQADV 3GLV GLY B 0 UNP Q979C2 EXPRESSION TAG SEQRES 1 A 143 GLY MET ILE ARG VAL MET ALA THR GLY VAL PHE ASP ILE SEQRES 2 A 143 LEU HIS LEU GLY HIS ILE HIS TYR LEU LYS GLU SER LYS SEQRES 3 A 143 LYS LEU GLY ASP GLU LEU VAL VAL VAL VAL ALA ARG ASP SEQRES 4 A 143 SER THR ALA ARG ASN ASN GLY LYS ILE PRO ILE PHE ASP SEQRES 5 A 143 GLU ASN SER ARG LEU ALA LEU ILE SER GLU LEU LYS VAL SEQRES 6 A 143 VAL ASP ARG ALA ILE LEU GLY HIS GLU GLY ASP MET MET SEQRES 7 A 143 LYS THR VAL ILE GLU VAL LYS PRO ASP ILE ILE THR LEU SEQRES 8 A 143 GLY TYR ASP GLN LYS PHE ASP GLU ALA GLU LEU GLN SER SEQRES 9 A 143 LYS ILE ASN LYS LEU GLY ILE THR VAL LYS ILE VAL ARG SEQRES 10 A 143 ILE SER LYS TYR ASP GLY GLN LEU ASN SER SER SER SER SEQRES 11 A 143 VAL ARG LYS LYS ILE MET GLU LEU ILE GLY GLU ARG TYR SEQRES 1 B 143 GLY MET ILE ARG VAL MET ALA THR GLY VAL PHE ASP ILE SEQRES 2 B 143 LEU HIS LEU GLY HIS ILE HIS TYR LEU LYS GLU SER LYS SEQRES 3 B 143 LYS LEU GLY ASP GLU LEU VAL VAL VAL VAL ALA ARG ASP SEQRES 4 B 143 SER THR ALA ARG ASN ASN GLY LYS ILE PRO ILE PHE ASP SEQRES 5 B 143 GLU ASN SER ARG LEU ALA LEU ILE SER GLU LEU LYS VAL SEQRES 6 B 143 VAL ASP ARG ALA ILE LEU GLY HIS GLU GLY ASP MET MET SEQRES 7 B 143 LYS THR VAL ILE GLU VAL LYS PRO ASP ILE ILE THR LEU SEQRES 8 B 143 GLY TYR ASP GLN LYS PHE ASP GLU ALA GLU LEU GLN SER SEQRES 9 B 143 LYS ILE ASN LYS LEU GLY ILE THR VAL LYS ILE VAL ARG SEQRES 10 B 143 ILE SER LYS TYR ASP GLY GLN LEU ASN SER SER SER SER SEQRES 11 B 143 VAL ARG LYS LYS ILE MET GLU LEU ILE GLY GLU ARG TYR HET SO4 A 203 5 HET AMP B 201 23 HET SO4 B 202 5 HETNAM SO4 SULFATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 AMP C10 H14 N5 O7 P FORMUL 6 HOH *164(H2 O) HELIX 1 1 HIS A 14 LYS A 26 1 13 HELIX 2 2 ARG A 37 ASN A 44 1 8 HELIX 3 3 ASP A 51 SER A 60 1 10 HELIX 4 4 ASP A 75 LYS A 84 1 10 HELIX 5 5 GLN A 94 GLY A 109 1 16 HELIX 6 6 HIS B 14 LYS B 26 1 13 HELIX 7 7 ARG B 37 ASN B 43 1 7 HELIX 8 8 ASP B 51 GLU B 61 1 11 HELIX 9 9 ASP B 75 LYS B 84 1 10 HELIX 10 10 ASP B 97 LEU B 108 1 12 SHEET 1 A 5 ARG A 67 LEU A 70 0 SHEET 2 A 5 GLU A 30 VAL A 35 1 N VAL A 33 O ARG A 67 SHEET 3 A 5 ARG A 3 GLY A 8 1 N ALA A 6 O VAL A 34 SHEET 4 A 5 ILE A 87 LEU A 90 1 O ILE A 87 N MET A 5 SHEET 5 A 5 LYS A 113 ARG A 116 1 O VAL A 115 N ILE A 88 SHEET 1 B 5 ARG B 67 LEU B 70 0 SHEET 2 B 5 GLU B 30 VAL B 35 1 N VAL B 35 O ILE B 69 SHEET 3 B 5 ARG B 3 GLY B 8 1 N VAL B 4 O GLU B 30 SHEET 4 B 5 ILE B 87 LEU B 90 1 O ILE B 87 N MET B 5 SHEET 5 B 5 LYS B 113 ARG B 116 1 O VAL B 115 N LEU B 90 SITE 1 AC1 6 GLY A 8 VAL A 9 PHE A 10 HIS A 17 SITE 2 AC1 6 LYS A 46 HOH A 180 SITE 1 AC2 22 LYS A 107 THR B 7 GLY B 8 VAL B 9 SITE 2 AC2 22 PHE B 10 HIS B 14 GLY B 16 HIS B 17 SITE 3 AC2 22 TYR B 20 GLY B 91 TYR B 92 ASP B 93 SITE 4 AC2 22 GLN B 94 SER B 118 LYS B 119 TYR B 120 SITE 5 AC2 22 HOH B 143 HOH B 155 HOH B 164 HOH B 173 SITE 6 AC2 22 HOH B 186 HOH B 197 SITE 1 AC3 3 ARG B 37 HIS B 72 GLU B 73 CRYST1 62.391 67.187 99.032 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010098 0.00000