HEADER HYDROLASE 13-MAR-09 3GM8 TITLE CRYSTAL STRUCTURE OF A BETA-GLYCOSIDASE FROM BACTEROIDES VULGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 2, CANDIDATE BETA-GLYCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_0391; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, HYDROLASE, GLYCOSIDASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,S.OZYURT,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3GM8 1 REMARK REVDAT 5 10-FEB-21 3GM8 1 AUTHOR JRNL REMARK REVDAT 4 21-NOV-18 3GM8 1 AUTHOR REVDAT 3 01-NOV-17 3GM8 1 REMARK REVDAT 2 13-JUL-11 3GM8 1 VERSN REVDAT 1 31-MAR-09 3GM8 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,S.OZYURT,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A BETA-GLYCOSIDASE FROM BACTEROIDES JRNL TITL 2 VULGATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 44941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6305 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4269 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8581 ; 1.572 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10379 ; 0.909 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 766 ; 6.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;36.894 ;23.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 991 ;15.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7028 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1307 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3834 ; 0.721 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1551 ; 0.142 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6194 ; 1.368 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2471 ; 2.027 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2387 ; 3.133 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45017 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.769 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : 0.14400 REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : 0.46500 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL PH 8.0, 28% PEG 3350, REMARK 280 150MM AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.33350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.33350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.67400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.67400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.33350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.67400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.33350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 96.67400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 SER A 236 REMARK 465 SER A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 SER A 240 REMARK 465 THR A 445 REMARK 465 ARG A 446 REMARK 465 GLY A 447 REMARK 465 MET A 448 REMARK 465 LYS A 449 REMARK 465 THR A 450 REMARK 465 ASP A 451 REMARK 465 TYR A 452 REMARK 465 GLN A 453 REMARK 465 LYS A 454 REMARK 465 LYS A 455 REMARK 465 PHE A 456 REMARK 465 LYS A 518 REMARK 465 GLY A 519 REMARK 465 ASN A 520 REMARK 465 ILE A 521 REMARK 465 ASN A 522 REMARK 465 TRP A 523 REMARK 465 GLU A 524 REMARK 465 GLN A 525 REMARK 465 ILE A 815 REMARK 465 GLU A 816 REMARK 465 GLY A 817 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 SER A 94 OG REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 527 CG CD CE NZ REMARK 470 SER A 717 OG REMARK 470 VAL A 718 CG1 CG2 REMARK 470 LYS A 719 CG CD CE NZ REMARK 470 ASP A 790 CG OD1 OD2 REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 GLU A 792 CG CD OE1 OE2 REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 GLU A 813 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 659 O HOH A 1005 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 -158.98 -136.20 REMARK 500 ALA A 81 -118.53 -127.71 REMARK 500 ASN A 193 -127.59 49.83 REMARK 500 LYS A 250 67.37 27.78 REMARK 500 ASN A 272 17.34 57.96 REMARK 500 ASP A 368 -94.33 -99.79 REMARK 500 TRP A 370 -108.53 -108.15 REMARK 500 GLU A 412 64.27 34.24 REMARK 500 ASN A 465 -142.40 -103.66 REMARK 500 TYR A 481 57.89 -141.77 REMARK 500 GLU A 490 76.97 -158.96 REMARK 500 PHE A 512 58.49 -154.08 REMARK 500 LYS A 527 -39.39 -32.86 REMARK 500 ASN A 557 17.25 -149.29 REMARK 500 SER A 585 -83.74 -92.53 REMARK 500 ASN A 600 32.64 -98.28 REMARK 500 ALA A 608 30.08 77.70 REMARK 500 PRO A 631 -159.96 -78.32 REMARK 500 HIS A 632 -175.09 -69.57 REMARK 500 HIS A 707 -41.57 -142.45 REMARK 500 PRO A 774 48.10 -82.37 REMARK 500 ARG A 780 53.99 38.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-12023A RELATED DB: TARGETDB DBREF 3GM8 A 19 815 UNP A6KXE5 A6KXE5_BACV8 19 815 SEQADV 3GM8 SER A 17 UNP A6KXE5 EXPRESSION TAG SEQADV 3GM8 LEU A 18 UNP A6KXE5 EXPRESSION TAG SEQADV 3GM8 GLU A 816 UNP A6KXE5 EXPRESSION TAG SEQADV 3GM8 GLY A 817 UNP A6KXE5 EXPRESSION TAG SEQRES 1 A 801 SER LEU ALA GLY GLU THR ILE ASN PHE CYS LYS GLY TRP SEQRES 2 A 801 LYS PHE HIS LEU GLY ASP ALA GLY LYS GLY ALA SER SER SEQRES 3 A 801 SER SER TYR ASN ASP SER GLN TRP ARG ILE LEU ASN ILE SEQRES 4 A 801 PRO HIS ASP TRP SER ILE GLU GLY THR TYR LYS GLN PHE SEQRES 5 A 801 GLU ASN GLY THR ASP TRP GLN SER GLY PHE LEU PRO ALA SEQRES 6 A 801 GLY ILE SER TRP TYR ARG LYS THR PHE THR ILE PRO SER SEQRES 7 A 801 LYS TRP LYS ASN LYS LYS VAL GLN ILE LEU PHE GLU GLY SEQRES 8 A 801 VAL TYR LEU ASN SER GLU VAL TRP ILE ASN GLY HIS TRP SEQRES 9 A 801 LEU GLY LYS ARG PRO ASN GLY TYR ILE SER PHE VAL TYR SEQRES 10 A 801 ASP LEU THR PRO TYR LEU GLN GLU GLY LYS ASN GLN ILE SEQRES 11 A 801 ALA VAL LYS VAL ASP HIS SER LYS ALA LEU THR GLY ARG SEQRES 12 A 801 TRP TYR THR GLY SER GLY ILE TYR ARG PRO VAL TYR LEU SEQRES 13 A 801 LEU VAL SER ASN PRO THR HIS ILE PRO TYR SER GLY ILE SEQRES 14 A 801 HIS PHE ARG SER LYS LEU GLN ASN LYS GLN SER ALA THR SEQRES 15 A 801 TYR THR LEU SER ILE GLU ILE GLU THR GLN GLU LYS LYS SEQRES 16 A 801 PRO ILE LYS VAL LYS THR TYR LEU GLN ALA PRO ASN GLY SEQRES 17 A 801 SER ILE ALA ASP THR SER GLU LYS ILE PHE VAL SER SER SEQRES 18 A 801 ALA ASP SER LEU CYS PHE LEU SER GLY SER ILE ARG LYS SEQRES 19 A 801 PRO LEU LEU TRP SER PRO ASP SER PRO ASN VAL TYR THR SEQRES 20 A 801 LEU ILE CYS GLN LEU THR ARG ASP ASN LYS ILE LEU ASP SEQRES 21 A 801 GLU CYS ARG LEU PRO VAL GLY PHE ARG GLN LEU GLU PHE SEQRES 22 A 801 ASN PRO VAL SER GLY PHE LEU LEU ASN GLY LYS SER LEU SEQRES 23 A 801 LYS ILE LYS GLY VAL CYS ASP HIS HIS THR VAL GLY ALA SEQRES 24 A 801 VAL GLY ALA ALA VAL PRO ASP ASP LEU LEU HIS TYR ARG SEQRES 25 A 801 LEU LYS LEU LEU LYS ASP MET GLY CYS ASN ALA ILE ARG SEQRES 26 A 801 THR SER HIS ASN PRO PHE SER PRO ALA PHE TYR ASN LEU SEQRES 27 A 801 CYS ASP THR MET GLY ILE MET VAL LEU ASN GLU GLY LEU SEQRES 28 A 801 ASP GLY TRP ASN GLN PRO LYS ALA ALA ASP ASP TYR GLY SEQRES 29 A 801 ASN TYR PHE ASP GLU TRP TRP GLN LYS ASP MET THR ASP SEQRES 30 A 801 PHE ILE LYS ARG ASP ARG ASN HIS PRO SER ILE ILE MET SEQRES 31 A 801 TRP SER ILE GLY ASN GLU VAL THR GLY ALA THR PRO GLU SEQRES 32 A 801 ILE GLN HIS ASN LEU VAL SER LEU PHE HIS GLN LEU ASP SEQRES 33 A 801 PRO ASP ARG PRO VAL THR GLN GLY GLY THR ASP PRO THR SEQRES 34 A 801 ARG GLY MET LYS THR ASP TYR GLN LYS LYS PHE ASN TYR SEQRES 35 A 801 LEU ASP ILE ILE GLY PHE ASN GLY ASN GLY GLU GLU ILE SEQRES 36 A 801 GLY GLU LEU GLU HIS PHE HIS LYS ASN TYR PRO THR LEU SEQRES 37 A 801 CYS ALA ILE ALA THR GLU VAL PRO HIS THR TYR GLN THR SEQRES 38 A 801 ARG GLY VAL TYR ARG SER GLN THR GLN TRP ARG ARG ARG SEQRES 39 A 801 ASP PHE PRO ALA PRO TRP GLU LYS GLY ASN ILE ASN TRP SEQRES 40 A 801 GLU GLN PHE LYS HIS ARG VAL PHE PRO ILE PRO ASP LEU SEQRES 41 A 801 THR GLU LYS GLU CYS PHE PRO GLU GLU SER ASP TYR PRO SEQRES 42 A 801 TYR TYR GLN SER SER TYR ASP ASN ALA SER VAL ARG ILE SEQRES 43 A 801 SER ALA ARG LYS SER TRP GLN ARG THR CYS SER PHE PRO SEQRES 44 A 801 TRP LEU MET GLY GLU PHE ARG TRP GLY SER PHE ASP TYR SEQRES 45 A 801 LEU GLY GLU ALA GLU TRP PRO GLN ARG CYS GLY ASN PHE SEQRES 46 A 801 GLY ILE ILE ASP ILE ALA ALA ILE PRO LYS ASP ALA TYR SEQRES 47 A 801 PHE LEU TYR GLN SER LEU TRP THR ASP LYS PRO MET VAL SEQRES 48 A 801 HIS LEU LEU PRO HIS TRP THR HIS PRO GLY LYS GLU GLY SEQRES 49 A 801 LYS THR ILE PRO VAL VAL ILE TYR THR ASN CYS ASP ALA SEQRES 50 A 801 VAL GLU LEU PHE ILE ASN ASN VAL SER LEU GLY SER LYS SEQRES 51 A 801 PRO TYR THR GLY GLU GLN LEU ILE TRP LEU VAL PRO TYR SEQRES 52 A 801 SER PRO GLY LYS ILE GLU ALA ARG GLY ILE LYS LYS GLY SEQRES 53 A 801 LYS ILE VAL ALA THR ASP CYS TYR GLN SER ALA GLU ALA SEQRES 54 A 801 PRO HIS SER VAL ALA LEU ALA SER ASN LYS TYR SER VAL SEQRES 55 A 801 LYS ALA GLY SER ASP GLU VAL ILE ARG ILE GLU ILE ASP SEQRES 56 A 801 ILE THR ASP LYS ASN GLY ILE PRO CYS PRO TYR ALA SER SEQRES 57 A 801 ASN GLU LEU SER PHE HIS VAL SER GLY PRO LEU ARG LEU SEQRES 58 A 801 LEU GLY VAL ASP ASN GLY ASN PRO THR ASP MET PHE PRO SEQRES 59 A 801 TYR GLN GLN PRO HIS CYS ARG CYS PHE ARG GLY LYS CYS SEQRES 60 A 801 VAL VAL LEU LEU GLN SER ASP GLU GLU LYS GLY LYS GLY SEQRES 61 A 801 THR LEU THR VAL GLN GLY THR LYS LEU VAL GLU LYS LYS SEQRES 62 A 801 LEU ILE ILE GLU VAL ILE GLU GLY HET GOL A 1 6 HET GOL A 2 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *256(H2 O) HELIX 1 1 GLY A 37 SER A 42 5 6 HELIX 2 2 ASP A 58 GLY A 63 5 6 HELIX 3 3 SER A 94 ASN A 98 5 5 HELIX 4 4 THR A 136 LEU A 139 5 4 HELIX 5 5 VAL A 313 GLY A 317 5 5 HELIX 6 6 PRO A 321 MET A 335 1 15 HELIX 7 7 SER A 348 GLY A 359 1 12 HELIX 8 8 ASP A 378 ASN A 381 5 4 HELIX 9 9 TYR A 382 ARG A 399 1 18 HELIX 10 10 THR A 417 ASP A 432 1 16 HELIX 11 11 ASN A 465 GLU A 470 5 6 HELIX 12 12 GLY A 472 TYR A 481 1 10 HELIX 13 13 ARG A 508 PHE A 512 1 5 HELIX 14 14 PHE A 526 VAL A 530 5 5 HELIX 15 15 PHE A 542 TYR A 548 5 7 HELIX 16 16 SER A 563 PHE A 574 1 12 HELIX 17 17 LYS A 611 THR A 622 1 12 SHEET 1 A 4 GLU A 21 ASN A 24 0 SHEET 2 A 4 VAL A 170 SER A 175 -1 O VAL A 174 N GLU A 21 SHEET 3 A 4 LYS A 100 PHE A 105 -1 N LYS A 100 O SER A 175 SHEET 4 A 4 PHE A 131 ASP A 134 -1 O TYR A 133 N ILE A 103 SHEET 1 B 6 ARG A 51 LEU A 53 0 SHEET 2 B 6 TRP A 29 LEU A 33 -1 N TRP A 29 O LEU A 53 SHEET 3 B 6 GLY A 82 THR A 91 -1 O ARG A 87 N LYS A 30 SHEET 4 B 6 LYS A 143 HIS A 152 -1 O ASN A 144 N PHE A 90 SHEET 5 B 6 SER A 112 ILE A 116 -1 N TRP A 115 O ALA A 147 SHEET 6 B 6 HIS A 119 ARG A 124 -1 O ARG A 124 N SER A 112 SHEET 1 C 3 ILE A 185 GLN A 192 0 SHEET 2 C 3 SER A 196 ILE A 203 -1 O THR A 198 N LYS A 190 SHEET 3 C 3 CYS A 242 ARG A 249 -1 O ILE A 248 N ALA A 197 SHEET 1 D 4 ILE A 226 PHE A 234 0 SHEET 2 D 4 ILE A 213 GLN A 220 -1 N LEU A 219 O ALA A 227 SHEET 3 D 4 TYR A 262 ARG A 270 -1 O GLN A 267 N LYS A 216 SHEET 4 D 4 LYS A 273 VAL A 282 -1 O LEU A 280 N LEU A 264 SHEET 1 E 3 LEU A 287 ASN A 290 0 SHEET 2 E 3 GLY A 294 LEU A 297 -1 O GLY A 294 N ASN A 290 SHEET 3 E 3 LYS A 300 SER A 301 -1 O LYS A 300 N LEU A 297 SHEET 1 F 9 ILE A 304 ASP A 309 0 SHEET 2 F 9 ALA A 339 THR A 342 1 O ARG A 341 N VAL A 307 SHEET 3 F 9 MET A 361 GLU A 365 1 O LEU A 363 N ILE A 340 SHEET 4 F 9 ILE A 404 ASN A 411 1 O ILE A 405 N VAL A 362 SHEET 5 F 9 VAL A 437 GLY A 440 1 O GLY A 440 N GLY A 410 SHEET 6 F 9 ILE A 461 PHE A 464 1 N ILE A 461 O VAL A 437 SHEET 7 F 9 CYS A 485 ALA A 488 1 O CYS A 485 N ILE A 462 SHEET 8 F 9 LEU A 577 ARG A 582 1 O GLY A 579 N ALA A 488 SHEET 9 F 9 ILE A 304 ASP A 309 1 N CYS A 308 O ARG A 582 SHEET 1 G 2 GLN A 506 TRP A 507 0 SHEET 2 G 2 ALA A 558 SER A 559 1 O SER A 559 N GLN A 506 SHEET 1 H 3 VAL A 627 LEU A 630 0 SHEET 2 H 3 THR A 642 THR A 649 -1 O TYR A 648 N HIS A 628 SHEET 3 H 3 LEU A 673 PRO A 678 -1 O LEU A 673 N ILE A 647 SHEET 1 I 4 VAL A 661 PRO A 667 0 SHEET 2 I 4 ALA A 653 ILE A 658 -1 N LEU A 656 O LEU A 663 SHEET 3 I 4 LYS A 683 LYS A 690 -1 O ARG A 687 N GLU A 655 SHEET 4 I 4 LYS A 693 GLN A 701 -1 O VAL A 695 N GLY A 688 SHEET 1 J 4 PRO A 706 SER A 713 0 SHEET 2 J 4 ILE A 726 ASP A 734 -1 O THR A 733 N HIS A 707 SHEET 3 J 4 LYS A 782 SER A 789 -1 O LEU A 787 N ILE A 726 SHEET 4 J 4 LEU A 755 ASP A 761 -1 N LEU A 758 O LEU A 786 SHEET 1 K 4 HIS A 775 ARG A 777 0 SHEET 2 K 4 GLU A 746 SER A 752 -1 N LEU A 747 O CYS A 776 SHEET 3 K 4 LYS A 795 GLN A 801 -1 O THR A 799 N HIS A 750 SHEET 4 K 4 LYS A 808 GLU A 813 -1 O ILE A 812 N GLY A 796 CISPEP 1 ILE A 55 PRO A 56 0 1.50 CISPEP 2 TYR A 109 LEU A 110 0 -6.37 CISPEP 3 SER A 343 HIS A 344 0 -11.22 CISPEP 4 VAL A 491 PRO A 492 0 0.99 CISPEP 5 TRP A 594 PRO A 595 0 12.92 CISPEP 6 LEU A 630 PRO A 631 0 -11.74 SITE 1 AC1 8 ARG A 159 HIS A 344 ASN A 411 GLU A 412 SITE 2 AC1 8 GLU A 490 TRP A 583 GLU A 591 HOH A 875 SITE 1 AC2 5 HOH A 14 GLU A 106 PRO A 169 TYR A 171 SITE 2 AC2 5 ASP A 322 CRYST1 62.754 193.348 190.667 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005245 0.00000 CONECT 6114 6115 6116 CONECT 6115 6114 CONECT 6116 6114 6117 6118 CONECT 6117 6116 CONECT 6118 6116 6119 CONECT 6119 6118 CONECT 6120 6121 6122 CONECT 6121 6120 CONECT 6122 6120 6123 6124 CONECT 6123 6122 CONECT 6124 6122 6125 CONECT 6125 6124 MASTER 378 0 2 17 46 0 4 6 6380 1 12 62 END