HEADER HYDROLASE 13-MAR-09 3GM8 TITLE CRYSTAL STRUCTURE OF A BETA-GLYCOSIDASE FROM BACTEROIDES VULGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 2, CANDIDATE BETA-GLYCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_0391; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, HYDROLASE, GLYCOSIDASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,S.OZYURT,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3GM8 1 REMARK REVDAT 5 10-FEB-21 3GM8 1 AUTHOR JRNL REMARK REVDAT 4 21-NOV-18 3GM8 1 AUTHOR REVDAT 3 01-NOV-17 3GM8 1 REMARK REVDAT 2 13-JUL-11 3GM8 1 VERSN REVDAT 1 31-MAR-09 3GM8 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,S.OZYURT,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A BETA-GLYCOSIDASE FROM BACTEROIDES JRNL TITL 2 VULGATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 44941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6305 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4269 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8581 ; 1.572 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10379 ; 0.909 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 766 ; 6.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;36.894 ;23.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 991 ;15.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7028 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1307 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3834 ; 0.721 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1551 ; 0.142 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6194 ; 1.368 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2471 ; 2.027 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2387 ; 3.133 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45017 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.769 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : 0.14400 REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : 0.46500 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL PH 8.0, 28% PEG 3350, REMARK 280 150MM AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.33350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.33350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.67400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.67400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.33350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.67400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.33350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.37700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 96.67400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 SER A 236 REMARK 465 SER A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 SER A 240 REMARK 465 THR A 445 REMARK 465 ARG A 446 REMARK 465 GLY A 447 REMARK 465 MET A 448 REMARK 465 LYS A 449 REMARK 465 THR A 450 REMARK 465 ASP A 451 REMARK 465 TYR A 452 REMARK 465 GLN A 453 REMARK 465 LYS A 454 REMARK 465 LYS A 455 REMARK 465 PHE A 456 REMARK 465 LYS A 518 REMARK 465 GLY A 519 REMARK 465 ASN A 520 REMARK 465 ILE A 521 REMARK 465 ASN A 522 REMARK 465 TRP A 523 REMARK 465 GLU A 524 REMARK 465 GLN A 525 REMARK 465 ILE A 815 REMARK 465 GLU A 816 REMARK 465 GLY A 817 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 SER A 94 OG REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 527 CG CD CE NZ REMARK 470 SER A 717 OG REMARK 470 VAL A 718 CG1 CG2 REMARK 470 LYS A 719 CG CD CE NZ REMARK 470 ASP A 790 CG OD1 OD2 REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 GLU A 792 CG CD OE1 OE2 REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 GLU A 813 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 659 O HOH A 1005 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 -158.98 -136.20 REMARK 500 ALA A 81 -118.53 -127.71 REMARK 500 ASN A 193 -127.59 49.83 REMARK 500 LYS A 250 67.37 27.78 REMARK 500 ASN A 272 17.34 57.96 REMARK 500 ASP A 368 -94.33 -99.79 REMARK 500 TRP A 370 -108.53 -108.15 REMARK 500 GLU A 412 64.27 34.24 REMARK 500 ASN A 465 -142.40 -103.66 REMARK 500 TYR A 481 57.89 -141.77 REMARK 500 GLU A 490 76.97 -158.96 REMARK 500 PHE A 512 58.49 -154.08 REMARK 500 LYS A 527 -39.39 -32.86 REMARK 500 ASN A 557 17.25 -149.29 REMARK 500 SER A 585 -83.74 -92.53 REMARK 500 ASN A 600 32.64 -98.28 REMARK 500 ALA A 608 30.08 77.70 REMARK 500 PRO A 631 -159.96 -78.32 REMARK 500 HIS A 632 -175.09 -69.57 REMARK 500 HIS A 707 -41.57 -142.45 REMARK 500 PRO A 774 48.10 -82.37 REMARK 500 ARG A 780 53.99 38.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-12023A RELATED DB: TARGETDB DBREF 3GM8 A 19 815 UNP A6KXE5 A6KXE5_BACV8 19 815 SEQADV 3GM8 SER A 17 UNP A6KXE5 EXPRESSION TAG SEQADV 3GM8 LEU A 18 UNP A6KXE5 EXPRESSION TAG SEQADV 3GM8 GLU A 816 UNP A6KXE5 EXPRESSION TAG SEQADV 3GM8 GLY A 817 UNP A6KXE5 EXPRESSION TAG SEQRES 1 A 801 SER LEU ALA GLY GLU THR ILE ASN PHE CYS LYS GLY TRP SEQRES 2 A 801 LYS PHE HIS LEU GLY ASP ALA GLY LYS GLY ALA SER SER SEQRES 3 A 801 SER SER TYR ASN ASP SER GLN TRP ARG ILE LEU ASN ILE SEQRES 4 A 801 PRO HIS ASP TRP SER ILE GLU GLY THR TYR LYS GLN PHE SEQRES 5 A 801 GLU ASN GLY THR ASP TRP GLN SER GLY PHE LEU PRO ALA SEQRES 6 A 801 GLY ILE SER TRP TYR ARG LYS THR PHE THR ILE PRO SER SEQRES 7 A 801 LYS TRP LYS ASN LYS LYS VAL GLN ILE LEU PHE GLU GLY SEQRES 8 A 801 VAL TYR LEU ASN SER GLU VAL TRP ILE ASN GLY HIS TRP SEQRES 9 A 801 LEU GLY LYS ARG PRO ASN GLY TYR ILE SER PHE VAL TYR SEQRES 10 A 801 ASP LEU THR PRO TYR LEU GLN GLU GLY LYS ASN GLN ILE SEQRES 11 A 801 ALA VAL LYS VAL ASP HIS SER LYS ALA LEU THR GLY ARG SEQRES 12 A 801 TRP TYR THR GLY SER GLY ILE TYR ARG PRO VAL TYR LEU SEQRES 13 A 801 LEU VAL SER ASN PRO THR HIS ILE PRO TYR SER GLY ILE SEQRES 14 A 801 HIS PHE ARG SER LYS LEU GLN ASN LYS GLN SER ALA THR SEQRES 15 A 801 TYR THR LEU SER ILE GLU ILE GLU THR GLN GLU LYS LYS SEQRES 16 A 801 PRO ILE LYS VAL LYS THR TYR LEU GLN ALA PRO ASN GLY SEQRES 17 A 801 SER ILE ALA ASP THR SER GLU LYS ILE PHE VAL SER SER SEQRES 18 A 801 ALA ASP SER LEU CYS PHE LEU SER GLY SER ILE ARG LYS SEQRES 19 A 801 PRO LEU LEU TRP SER PRO ASP SER PRO ASN VAL TYR THR SEQRES 20 A 801 LEU ILE CYS GLN LEU THR ARG ASP ASN LYS ILE LEU ASP SEQRES 21 A 801 GLU CYS ARG LEU PRO VAL GLY PHE ARG GLN LEU GLU PHE SEQRES 22 A 801 ASN PRO VAL SER GLY PHE LEU LEU ASN GLY LYS SER LEU SEQRES 23 A 801 LYS ILE LYS GLY VAL CYS ASP HIS HIS THR VAL GLY ALA SEQRES 24 A 801 VAL GLY ALA ALA VAL PRO ASP ASP LEU LEU HIS TYR ARG SEQRES 25 A 801 LEU LYS LEU LEU LYS ASP MET GLY CYS ASN ALA ILE ARG SEQRES 26 A 801 THR SER HIS ASN PRO PHE SER PRO ALA PHE TYR ASN LEU SEQRES 27 A 801 CYS ASP THR MET GLY ILE MET VAL LEU ASN GLU GLY LEU SEQRES 28 A 801 ASP GLY TRP ASN GLN PRO LYS ALA ALA ASP ASP TYR GLY SEQRES 29 A 801 ASN TYR PHE ASP GLU TRP TRP GLN LYS ASP MET THR ASP SEQRES 30 A 801 PHE ILE LYS ARG ASP ARG ASN HIS PRO SER ILE ILE MET SEQRES 31 A 801 TRP SER ILE GLY ASN GLU VAL THR GLY ALA THR PRO GLU SEQRES 32 A 801 ILE GLN HIS ASN LEU VAL SER LEU PHE HIS GLN LEU ASP SEQRES 33 A 801 PRO ASP ARG PRO VAL THR GLN GLY GLY THR ASP PRO THR SEQRES 34 A 801 ARG GLY MET LYS THR ASP TYR GLN LYS LYS PHE ASN TYR SEQRES 35 A 801 LEU ASP ILE ILE GLY PHE ASN GLY ASN GLY GLU GLU ILE SEQRES 36 A 801 GLY GLU LEU GLU HIS PHE HIS LYS ASN TYR PRO THR LEU SEQRES 37 A 801 CYS ALA ILE ALA THR GLU VAL PRO HIS THR TYR GLN THR SEQRES 38 A 801 ARG GLY VAL TYR ARG SER GLN THR GLN TRP ARG ARG ARG SEQRES 39 A 801 ASP PHE PRO ALA PRO TRP GLU LYS GLY ASN ILE ASN TRP SEQRES 40 A 801 GLU GLN PHE LYS HIS ARG VAL PHE PRO ILE PRO ASP LEU SEQRES 41 A 801 THR GLU LYS GLU CYS PHE PRO GLU GLU SER ASP TYR PRO SEQRES 42 A 801 TYR TYR GLN SER SER TYR ASP ASN ALA SER VAL ARG ILE SEQRES 43 A 801 SER ALA ARG LYS SER TRP GLN ARG THR CYS SER PHE PRO SEQRES 44 A 801 TRP LEU MET GLY GLU PHE ARG TRP GLY SER PHE ASP TYR SEQRES 45 A 801 LEU GLY GLU ALA GLU TRP PRO GLN ARG CYS GLY ASN PHE SEQRES 46 A 801 GLY ILE ILE ASP ILE ALA ALA ILE PRO LYS ASP ALA TYR SEQRES 47 A 801 PHE LEU TYR GLN SER LEU TRP THR ASP LYS PRO MET VAL SEQRES 48 A 801 HIS LEU LEU PRO HIS TRP THR HIS PRO GLY LYS GLU GLY SEQRES 49 A 801 LYS THR ILE PRO VAL VAL ILE TYR THR ASN CYS ASP ALA SEQRES 50 A 801 VAL GLU LEU PHE ILE ASN ASN VAL SER LEU GLY SER LYS SEQRES 51 A 801 PRO TYR THR GLY GLU GLN LEU ILE TRP LEU VAL PRO TYR SEQRES 52 A 801 SER PRO GLY LYS ILE GLU ALA ARG GLY ILE LYS LYS GLY SEQRES 53 A 801 LYS ILE VAL ALA THR ASP CYS TYR GLN SER ALA GLU ALA SEQRES 54 A 801 PRO HIS SER VAL ALA LEU ALA SER ASN LYS TYR SER VAL SEQRES 55 A 801 LYS ALA GLY SER ASP GLU VAL ILE ARG ILE GLU ILE ASP SEQRES 56 A 801 ILE THR ASP LYS ASN GLY ILE PRO CYS PRO TYR ALA SER SEQRES 57 A 801 ASN GLU LEU SER PHE HIS VAL SER GLY PRO LEU ARG LEU SEQRES 58 A 801 LEU GLY VAL ASP ASN GLY ASN PRO THR ASP MET PHE PRO SEQRES 59 A 801 TYR GLN GLN PRO HIS CYS ARG CYS PHE ARG GLY LYS CYS SEQRES 60 A 801 VAL VAL LEU LEU GLN SER ASP GLU GLU LYS GLY LYS GLY SEQRES 61 A 801 THR LEU THR VAL GLN GLY THR LYS LEU VAL GLU LYS LYS SEQRES 62 A 801 LEU ILE ILE GLU VAL ILE GLU GLY HET GOL A 1 6 HET GOL A 2 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *256(H2 O) HELIX 1 1 GLY A 37 SER A 42 5 6 HELIX 2 2 ASP A 58 GLY A 63 5 6 HELIX 3 3 SER A 94 ASN A 98 5 5 HELIX 4 4 THR A 136 LEU A 139 5 4 HELIX 5 5 VAL A 313 GLY A 317 5 5 HELIX 6 6 PRO A 321 MET A 335 1 15 HELIX 7 7 SER A 348 GLY A 359 1 12 HELIX 8 8 ASP A 378 ASN A 381 5 4 HELIX 9 9 TYR A 382 ARG A 399 1 18 HELIX 10 10 THR A 417 ASP A 432 1 16 HELIX 11 11 ASN A 465 GLU A 470 5 6 HELIX 12 12 GLY A 472 TYR A 481 1 10 HELIX 13 13 ARG A 508 PHE A 512 1 5 HELIX 14 14 PHE A 526 VAL A 530 5 5 HELIX 15 15 PHE A 542 TYR A 548 5 7 HELIX 16 16 SER A 563 PHE A 574 1 12 HELIX 17 17 LYS A 611 THR A 622 1 12 SHEET 1 A 4 GLU A 21 ASN A 24 0 SHEET 2 A 4 VAL A 170 SER A 175 -1 O VAL A 174 N GLU A 21 SHEET 3 A 4 LYS A 100 PHE A 105 -1 N LYS A 100 O SER A 175 SHEET 4 A 4 PHE A 131 ASP A 134 -1 O TYR A 133 N ILE A 103 SHEET 1 B 6 ARG A 51 LEU A 53 0 SHEET 2 B 6 TRP A 29 LEU A 33 -1 N TRP A 29 O LEU A 53 SHEET 3 B 6 GLY A 82 THR A 91 -1 O ARG A 87 N LYS A 30 SHEET 4 B 6 LYS A 143 HIS A 152 -1 O ASN A 144 N PHE A 90 SHEET 5 B 6 SER A 112 ILE A 116 -1 N TRP A 115 O ALA A 147 SHEET 6 B 6 HIS A 119 ARG A 124 -1 O ARG A 124 N SER A 112 SHEET 1 C 3 ILE A 185 GLN A 192 0 SHEET 2 C 3 SER A 196 ILE A 203 -1 O THR A 198 N LYS A 190 SHEET 3 C 3 CYS A 242 ARG A 249 -1 O ILE A 248 N ALA A 197 SHEET 1 D 4 ILE A 226 PHE A 234 0 SHEET 2 D 4 ILE A 213 GLN A 220 -1 N LEU A 219 O ALA A 227 SHEET 3 D 4 TYR A 262 ARG A 270 -1 O GLN A 267 N LYS A 216 SHEET 4 D 4 LYS A 273 VAL A 282 -1 O LEU A 280 N LEU A 264 SHEET 1 E 3 LEU A 287 ASN A 290 0 SHEET 2 E 3 GLY A 294 LEU A 297 -1 O GLY A 294 N ASN A 290 SHEET 3 E 3 LYS A 300 SER A 301 -1 O LYS A 300 N LEU A 297 SHEET 1 F 9 ILE A 304 ASP A 309 0 SHEET 2 F 9 ALA A 339 THR A 342 1 O ARG A 341 N VAL A 307 SHEET 3 F 9 MET A 361 GLU A 365 1 O LEU A 363 N ILE A 340 SHEET 4 F 9 ILE A 404 ASN A 411 1 O ILE A 405 N VAL A 362 SHEET 5 F 9 VAL A 437 GLY A 440 1 O GLY A 440 N GLY A 410 SHEET 6 F 9 ILE A 461 PHE A 464 1 N ILE A 461 O VAL A 437 SHEET 7 F 9 CYS A 485 ALA A 488 1 O CYS A 485 N ILE A 462 SHEET 8 F 9 LEU A 577 ARG A 582 1 O GLY A 579 N ALA A 488 SHEET 9 F 9 ILE A 304 ASP A 309 1 N CYS A 308 O ARG A 582 SHEET 1 G 2 GLN A 506 TRP A 507 0 SHEET 2 G 2 ALA A 558 SER A 559 1 O SER A 559 N GLN A 506 SHEET 1 H 3 VAL A 627 LEU A 630 0 SHEET 2 H 3 THR A 642 THR A 649 -1 O TYR A 648 N HIS A 628 SHEET 3 H 3 LEU A 673 PRO A 678 -1 O LEU A 673 N ILE A 647 SHEET 1 I 4 VAL A 661 PRO A 667 0 SHEET 2 I 4 ALA A 653 ILE A 658 -1 N LEU A 656 O LEU A 663 SHEET 3 I 4 LYS A 683 LYS A 690 -1 O ARG A 687 N GLU A 655 SHEET 4 I 4 LYS A 693 GLN A 701 -1 O VAL A 695 N GLY A 688 SHEET 1 J 4 PRO A 706 SER A 713 0 SHEET 2 J 4 ILE A 726 ASP A 734 -1 O THR A 733 N HIS A 707 SHEET 3 J 4 LYS A 782 SER A 789 -1 O LEU A 787 N ILE A 726 SHEET 4 J 4 LEU A 755 ASP A 761 -1 N LEU A 758 O LEU A 786 SHEET 1 K 4 HIS A 775 ARG A 777 0 SHEET 2 K 4 GLU A 746 SER A 752 -1 N LEU A 747 O CYS A 776 SHEET 3 K 4 LYS A 795 GLN A 801 -1 O THR A 799 N HIS A 750 SHEET 4 K 4 LYS A 808 GLU A 813 -1 O ILE A 812 N GLY A 796 CISPEP 1 ILE A 55 PRO A 56 0 1.50 CISPEP 2 TYR A 109 LEU A 110 0 -6.37 CISPEP 3 SER A 343 HIS A 344 0 -11.22 CISPEP 4 VAL A 491 PRO A 492 0 0.99 CISPEP 5 TRP A 594 PRO A 595 0 12.92 CISPEP 6 LEU A 630 PRO A 631 0 -11.74 SITE 1 AC1 8 ARG A 159 HIS A 344 ASN A 411 GLU A 412 SITE 2 AC1 8 GLU A 490 TRP A 583 GLU A 591 HOH A 875 SITE 1 AC2 5 HOH A 14 GLU A 106 PRO A 169 TYR A 171 SITE 2 AC2 5 ASP A 322 CRYST1 62.754 193.348 190.667 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005245 0.00000