HEADER TRANSFERASE 15-MAR-09 3GMT TITLE CRYSTAL STRUCTURE OF ADENYLATE KINASE FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK, ATP-AMP TRANSPHOSPHORYLASE; COMPND 5 EC: 2.7.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI 1710B; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1719B; SOURCE 5 GENE: ADK, BURPS1710B_1080; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, ADENYLATE KINASE, BURKHOLDERIA PSEUDOMALLEI, ATP-BINDING, KEYWDS 2 KINASE, NUCLEOTIDE BIOSYNTHESIS, NUCLEOTIDE-BINDING, TRANSFERASE, KEYWDS 3 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ABENDROTH,B.L.STAKER,H.ROBINSON,G.W.BUCHKO,S.N.HEWITT,A.J.NAPULI, AUTHOR 2 W.VAN VOORHIS,R.STACY,P.J.MYLER,L.STEWART,SEATTLE STRUCTURAL AUTHOR 3 GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-NOV-24 3GMT 1 REMARK SEQADV LINK REVDAT 3 30-OCT-13 3GMT 1 REMARK VERSN REVDAT 2 05-MAY-10 3GMT 1 JRNL REVDAT 1 02-JUN-09 3GMT 0 JRNL AUTH G.W.BUCHKO,H.ROBINSON,J.ABENDROTH,B.L.STAKER,P.J.MYLER JRNL TITL STRUCTURAL CHARACTERIZATION OF BURKHOLDERIA PSEUDOMALLEI JRNL TITL 2 ADENYLATE KINASE (ADK): PROFOUND ASYMMETRY IN THE CRYSTAL JRNL TITL 3 STRUCTURE OF THE 'OPEN' STATE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 394 1012 2010 JRNL REFN ISSN 0006-291X JRNL PMID 20331978 JRNL DOI 10.1016/J.BBRC.2010.03.112 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, REMARK 1 AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, REMARK 1 AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, REMARK 1 AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, REMARK 1 AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, REMARK 1 AUTH 6 W.C.VAN VOORHIS REMARK 1 TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE REMARK 1 TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. REMARK 1 REF PLOS ONE V. 8 53851 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23382856 REMARK 1 DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 1.70000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3157 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2203 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4265 ; 1.521 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5366 ; 0.874 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 6.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;31.292 ;23.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;14.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3505 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 618 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1996 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 820 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3192 ; 1.478 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1161 ; 2.578 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1073 ; 4.024 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3GMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : 0.61800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, PARROT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HAMPTON SCREEN, B5: 30% PEG 4000, REMARK 280 200MM LI2SO4, 100MM TRIS PH 8,, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LEU A 205 REMARK 465 GLY A 206 REMARK 465 ALA A 207 REMARK 465 VAL A 208 REMARK 465 GLU A 209 REMARK 465 GLU A 210 REMARK 465 ILE A 211 REMARK 465 ARG A 212 REMARK 465 ALA A 213 REMARK 465 ARG A 214 REMARK 465 VAL A 215 REMARK 465 ARG A 216 REMARK 465 ARG A 217 REMARK 465 ALA A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 SER A 221 REMARK 465 GLU A 222 REMARK 465 MSE B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLU B 191 REMARK 465 ASN B 192 REMARK 465 GLY B 193 REMARK 465 LEU B 194 REMARK 465 GLY B 204 REMARK 465 LEU B 205 REMARK 465 GLY B 206 REMARK 465 ALA B 207 REMARK 465 VAL B 208 REMARK 465 GLU B 209 REMARK 465 GLU B 210 REMARK 465 ILE B 211 REMARK 465 ARG B 212 REMARK 465 ALA B 213 REMARK 465 ARG B 214 REMARK 465 VAL B 215 REMARK 465 ARG B 216 REMARK 465 ARG B 217 REMARK 465 ALA B 218 REMARK 465 GLN B 219 REMARK 465 VAL B 220 REMARK 465 SER B 221 REMARK 465 GLU B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 ILE A 202 CG1 CG2 CD1 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 54 O HOH A 336 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 63.24 -154.83 REMARK 500 GLU B 22 -73.94 -72.31 REMARK 500 ALA B 99 2.16 -69.27 REMARK 500 ASN B 138 63.02 -168.27 REMARK 500 ARG B 188 11.67 -62.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 188 GLY B 189 147.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00064.A RELATED DB: TARGETDB DBREF 3GMT A 1 215 UNP Q3JVB1 KAD_BURP1 1 215 DBREF 3GMT B 1 215 UNP Q3JVB1 KAD_BURP1 1 215 SEQADV 3GMT MSE A -7 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ALA A -6 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS A -5 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS A -4 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS A -3 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS A -2 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS A -1 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS A 0 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ARG A 216 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ARG A 217 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ALA A 218 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT GLN A 219 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT VAL A 220 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT SER A 221 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT GLU A 222 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT MSE B -7 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ALA B -6 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS B -5 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS B -4 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS B -3 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS B -2 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS B -1 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT HIS B 0 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ARG B 216 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ARG B 217 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT ALA B 218 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT GLN B 219 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT VAL B 220 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT SER B 221 UNP Q3JVB1 EXPRESSION TAG SEQADV 3GMT GLU B 222 UNP Q3JVB1 EXPRESSION TAG SEQRES 1 A 230 MSE ALA HIS HIS HIS HIS HIS HIS MSE ARG LEU ILE LEU SEQRES 2 A 230 LEU GLY ALA PRO GLY ALA GLY LYS GLY THR GLN ALA ASN SEQRES 3 A 230 PHE ILE LYS GLU LYS PHE GLY ILE PRO GLN ILE SER THR SEQRES 4 A 230 GLY ASP MSE LEU ARG ALA ALA VAL LYS ALA GLY THR PRO SEQRES 5 A 230 LEU GLY VAL GLU ALA LYS THR TYR MSE ASP GLU GLY LYS SEQRES 6 A 230 LEU VAL PRO ASP SER LEU ILE ILE GLY LEU VAL LYS GLU SEQRES 7 A 230 ARG LEU LYS GLU ALA ASP CYS ALA ASN GLY TYR LEU PHE SEQRES 8 A 230 ASP GLY PHE PRO ARG THR ILE ALA GLN ALA ASP ALA MSE SEQRES 9 A 230 LYS GLU ALA GLY VAL ALA ILE ASP TYR VAL LEU GLU ILE SEQRES 10 A 230 ASP VAL PRO PHE SER GLU ILE ILE GLU ARG MSE SER GLY SEQRES 11 A 230 ARG ARG THR HIS PRO ALA SER GLY ARG THR TYR HIS VAL SEQRES 12 A 230 LYS PHE ASN PRO PRO LYS VAL GLU GLY LYS ASP ASP VAL SEQRES 13 A 230 THR GLY GLU PRO LEU VAL GLN ARG ASP ASP ASP LYS GLU SEQRES 14 A 230 GLU THR VAL LYS LYS ARG LEU ASP VAL TYR GLU ALA GLN SEQRES 15 A 230 THR LYS PRO LEU ILE THR TYR TYR GLY ASP TRP ALA ARG SEQRES 16 A 230 ARG GLY ALA GLU ASN GLY LEU LYS ALA PRO ALA TYR ARG SEQRES 17 A 230 LYS ILE SER GLY LEU GLY ALA VAL GLU GLU ILE ARG ALA SEQRES 18 A 230 ARG VAL ARG ARG ALA GLN VAL SER GLU SEQRES 1 B 230 MSE ALA HIS HIS HIS HIS HIS HIS MSE ARG LEU ILE LEU SEQRES 2 B 230 LEU GLY ALA PRO GLY ALA GLY LYS GLY THR GLN ALA ASN SEQRES 3 B 230 PHE ILE LYS GLU LYS PHE GLY ILE PRO GLN ILE SER THR SEQRES 4 B 230 GLY ASP MSE LEU ARG ALA ALA VAL LYS ALA GLY THR PRO SEQRES 5 B 230 LEU GLY VAL GLU ALA LYS THR TYR MSE ASP GLU GLY LYS SEQRES 6 B 230 LEU VAL PRO ASP SER LEU ILE ILE GLY LEU VAL LYS GLU SEQRES 7 B 230 ARG LEU LYS GLU ALA ASP CYS ALA ASN GLY TYR LEU PHE SEQRES 8 B 230 ASP GLY PHE PRO ARG THR ILE ALA GLN ALA ASP ALA MSE SEQRES 9 B 230 LYS GLU ALA GLY VAL ALA ILE ASP TYR VAL LEU GLU ILE SEQRES 10 B 230 ASP VAL PRO PHE SER GLU ILE ILE GLU ARG MSE SER GLY SEQRES 11 B 230 ARG ARG THR HIS PRO ALA SER GLY ARG THR TYR HIS VAL SEQRES 12 B 230 LYS PHE ASN PRO PRO LYS VAL GLU GLY LYS ASP ASP VAL SEQRES 13 B 230 THR GLY GLU PRO LEU VAL GLN ARG ASP ASP ASP LYS GLU SEQRES 14 B 230 GLU THR VAL LYS LYS ARG LEU ASP VAL TYR GLU ALA GLN SEQRES 15 B 230 THR LYS PRO LEU ILE THR TYR TYR GLY ASP TRP ALA ARG SEQRES 16 B 230 ARG GLY ALA GLU ASN GLY LEU LYS ALA PRO ALA TYR ARG SEQRES 17 B 230 LYS ILE SER GLY LEU GLY ALA VAL GLU GLU ILE ARG ALA SEQRES 18 B 230 ARG VAL ARG ARG ALA GLN VAL SER GLU MODRES 3GMT MSE A 1 MET SELENOMETHIONINE MODRES 3GMT MSE A 34 MET SELENOMETHIONINE MODRES 3GMT MSE A 53 MET SELENOMETHIONINE MODRES 3GMT MSE A 96 MET SELENOMETHIONINE MODRES 3GMT MSE A 120 MET SELENOMETHIONINE MODRES 3GMT MSE B 1 MET SELENOMETHIONINE MODRES 3GMT MSE B 34 MET SELENOMETHIONINE MODRES 3GMT MSE B 53 MET SELENOMETHIONINE MODRES 3GMT MSE B 96 MET SELENOMETHIONINE MODRES 3GMT MSE B 120 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 8 HET MSE A 53 8 HET MSE A 96 8 HET MSE A 120 8 HET MSE B 1 8 HET MSE B 34 8 HET MSE B 53 8 HET MSE B 96 8 HET MSE B 120 8 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *216(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 SER A 30 ALA A 41 1 12 HELIX 3 3 THR A 43 ASP A 54 1 12 HELIX 4 4 PRO A 60 GLU A 74 1 15 HELIX 5 5 ALA A 75 ALA A 78 5 4 HELIX 6 6 THR A 89 ALA A 99 1 11 HELIX 7 7 PRO A 112 GLY A 122 1 11 HELIX 8 8 ARG A 156 ASP A 159 5 4 HELIX 9 9 LYS A 160 GLY A 189 1 30 HELIX 10 10 GLY B 12 GLY B 25 1 14 HELIX 11 11 SER B 30 GLY B 42 1 13 HELIX 12 12 THR B 43 ASP B 54 1 12 HELIX 13 13 PRO B 60 LEU B 72 1 13 HELIX 14 14 LYS B 73 ALA B 78 5 6 HELIX 15 15 THR B 89 ALA B 99 1 11 HELIX 16 16 PRO B 112 GLY B 122 1 11 HELIX 17 17 ARG B 156 ASP B 159 5 4 HELIX 18 18 LYS B 160 ARG B 188 1 29 SHEET 1 A 5 GLN A 28 ILE A 29 0 SHEET 2 A 5 TYR A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 A 5 ARG A 2 LEU A 6 1 N LEU A 3 O PHE A 83 SHEET 4 A 5 TYR A 105 ILE A 109 1 O ILE A 109 N LEU A 6 SHEET 5 A 5 ALA A 198 ILE A 202 1 O ARG A 200 N GLU A 108 SHEET 1 B 2 ARG A 123 HIS A 126 0 SHEET 2 B 2 ARG A 131 HIS A 134 -1 O TYR A 133 N ARG A 124 SHEET 1 C 5 GLN B 28 ILE B 29 0 SHEET 2 C 5 TYR B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 C 5 ARG B 2 GLY B 7 1 N LEU B 3 O PHE B 83 SHEET 4 C 5 TYR B 105 ILE B 109 1 O ILE B 109 N LEU B 6 SHEET 5 C 5 ALA B 198 ILE B 202 1 O ILE B 202 N GLU B 108 SHEET 1 D 2 ARG B 123 THR B 125 0 SHEET 2 D 2 THR B 132 HIS B 134 -1 O TYR B 133 N ARG B 124 LINK C MSE A 1 N ARG A 2 1555 1555 1.32 LINK C ASP A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N LEU A 35 1555 1555 1.32 LINK C TYR A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N ASP A 54 1555 1555 1.33 LINK C ALA A 95 N MSE A 96 1555 1555 1.34 LINK C MSE A 96 N LYS A 97 1555 1555 1.33 LINK C ARG A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N SER A 121 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C ASP B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N LEU B 35 1555 1555 1.33 LINK C TYR B 52 N MSE B 53 1555 1555 1.32 LINK C MSE B 53 N ASP B 54 1555 1555 1.34 LINK C ALA B 95 N MSE B 96 1555 1555 1.33 LINK C MSE B 96 N LYS B 97 1555 1555 1.33 LINK C ARG B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N SER B 121 1555 1555 1.32 CISPEP 1 PHE A 86 PRO A 87 0 -1.29 CISPEP 2 SER A 203 GLY A 204 0 8.87 CISPEP 3 PHE B 86 PRO B 87 0 3.09 SITE 1 AC1 6 GLY A 10 ALA A 11 GLY A 12 LYS A 13 SITE 2 AC1 6 GLY A 14 HOH A 322 SITE 1 AC2 3 ARG A 119 MSE A 120 ARG A 123 SITE 1 AC3 5 GLY B 10 ALA B 11 GLY B 12 LYS B 13 SITE 2 AC3 5 GLY B 14 SITE 1 AC4 3 ARG B 119 MSE B 120 ARG B 123 CRYST1 62.230 66.000 63.760 90.00 113.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016069 0.000000 0.007052 0.00000 SCALE2 0.000000 0.015152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017128 0.00000 HETATM 1 N MSE A 1 24.463 16.756 42.780 1.00 40.53 N HETATM 2 CA MSE A 1 23.212 16.066 43.227 1.00 40.44 C HETATM 3 C MSE A 1 22.186 15.949 42.113 1.00 37.70 C HETATM 4 O MSE A 1 21.591 16.935 41.699 1.00 36.57 O HETATM 5 CB MSE A 1 22.579 16.798 44.411 1.00 42.48 C HETATM 6 CG MSE A 1 23.336 16.649 45.706 1.00 49.49 C HETATM 7 SE MSE A 1 23.506 14.768 46.206 1.00 70.03 SE HETATM 8 CE MSE A 1 21.612 14.328 46.451 1.00 59.87 C